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c(c$,"setColumnV",function(a,b){switch(a){case 0:this.m00=b.x;this.m10=b.y;this.m20=b.z;break;case 1:this.m01=b.x;this.m11=b.y;this.m21=b.z;break;case 2:this.m02=b.x;this.m12=b.y;this.m22=b.z;break;default:this.err()}},"~N,JU.T3");c(c$,"getColumnV",function(a,b){switch(a){case 0:b.x=this.m00;b.y=this.m10;b.z=this.m20;break;case 1:b.x=this.m01;b.y=this.m11;b.z=this.m21;break;case 2:b.x=this.m02;b.y=this.m12;b.z=this.m22;break;default:this.err()}},"~N,JU.T3");c(c$,"setColumnA",function(a,b){this.setColumn33(a,
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"~N,~N");c(c$,"getTranslation",function(a){a.x=this.m03;a.y=this.m13;a.z=this.m23},"JU.T3");c(c$,"getRotationScale",function(a){a.m00=this.m00;a.m01=this.m01;a.m02=this.m02;a.m10=this.m10;a.m11=this.m11;a.m12=this.m12;a.m20=this.m20;a.m21=this.m21;a.m22=this.m22},"JU.M3");c(c$,"setRotationScale",function(a){this.m00=a.m00;this.m01=a.m01;this.m02=a.m02;this.m10=a.m10;this.m11=a.m11;this.m12=a.m12;this.m20=a.m20;this.m21=a.m21;this.m22=a.m22},"JU.M3");c(c$,"setRowA",function(a,b){3>a&&this.setRow33(a,
b);switch(a){case 0:this.m03=b[3];return;case 1:this.m13=b[3];return;case 2:this.m23=b[3];return;case 3:this.m30=b[0];this.m31=b[1];this.m32=b[2];this.m33=b[3];return}this.err()},"~N,~A");e(c$,"getRow",function(a,b){3>a&&this.getRow33(a,b);switch(a){case 0:b[3]=this.m03;return;case 1:b[3]=this.m13;return;case 2:b[3]=this.m23;return;case 3:b[0]=this.m30;b[1]=this.m31;b[2]=this.m32;b[3]=this.m33;return}this.err()},"~N,~A");c(c$,"setColumn4",function(a,b,d,c,f){0==a?(this.m00=b,this.m10=d,this.m20=c,
this.m30=f):1==a?(this.m01=b,this.m11=d,this.m21=c,this.m31=f):2==a?(this.m02=b,this.m12=d,this.m22=c,this.m32=f):3==a?(this.m03=b,this.m13=d,this.m23=c,this.m33=f):this.err()},"~N,~N,~N,~N,~N");c(c$,"setColumnA",function(a,b){3>a&&this.setColumn33(a,b);switch(a){case 0:this.m30=b[3];break;case 1:this.m31=b[3];break;case 2:this.m32=b[3];break;case 3:this.m03=b[0];this.m13=b[1];this.m23=b[2];this.m33=b[3];break;default:this.err()}},"~N,~A");c(c$,"getColumn",function(a,b){3>a&&this.getColumn33(a,b);
switch(a){case 0:b[3]=this.m30;break;case 1:b[3]=this.m31;break;case 2:b[3]=this.m32;break;case 3:b[0]=this.m03;b[1]=this.m13;b[2]=this.m23;b[3]=this.m33;break;default:this.err()}},"~N,~A");c(c$,"sub",function(a){this.sub33(a);this.m03-=a.m03;this.m13-=a.m13;this.m23-=a.m23;this.m30-=a.m30;this.m31-=a.m31;this.m32-=a.m32;this.m33-=a.m33},"JU.M4");c(c$,"transpose",function(){this.transpose33();var a=this.m03;this.m03=this.m30;this.m30=a;a=this.m13;this.m13=this.m31;this.m31=a;a=this.m23;this.m23=this.m32;
this.m32=a});c(c$,"invert",function(){var a=this.determinant4();if(0==a)return this;a=1/a;this.set(this.m11*(this.m22*this.m33-this.m23*this.m32)+this.m12*(this.m23*this.m31-this.m21*this.m33)+this.m13*(this.m21*this.m32-this.m22*this.m31),this.m21*(this.m02*this.m33-this.m03*this.m32)+this.m22*(this.m03*this.m31-this.m01*this.m33)+this.m23*(this.m01*this.m32-this.m02*this.m31),this.m31*(this.m02*this.m13-this.m03*this.m12)+this.m32*(this.m03*this.m11-this.m01*this.m13)+this.m33*(this.m01*this.m12-
this.m02*this.m11),this.m01*(this.m13*this.m22-this.m12*this.m23)+this.m02*(this.m11*this.m23-this.m13*this.m21)+this.m03*(this.m12*this.m21-this.m11*this.m22),this.m12*(this.m20*this.m33-this.m23*this.m30)+this.m13*(this.m22*this.m30-this.m20*this.m32)+this.m10*(this.m23*this.m32-this.m22*this.m33),this.m22*(this.m00*this.m33-this.m03*this.m30)+this.m23*(this.m02*this.m30-this.m00*this.m32)+this.m20*(this.m03*this.m32-this.m02*this.m33),this.m32*(this.m00*this.m13-this.m03*this.m10)+this.m33*(this.m02*
this.m10-this.m00*this.m12)+this.m30*(this.m03*this.m12-this.m02*this.m13),this.m02*(this.m13*this.m20-this.m10*this.m23)+this.m03*(this.m10*this.m22-this.m12*this.m20)+this.m00*(this.m12*this.m23-this.m13*this.m22),this.m13*(this.m20*this.m31-this.m21*this.m30)+this.m10*(this.m21*this.m33-this.m23*this.m31)+this.m11*(this.m23*this.m30-this.m20*this.m33),this.m23*(this.m00*this.m31-this.m01*this.m30)+this.m20*(this.m01*this.m33-this.m03*this.m31)+this.m21*(this.m03*this.m30-this.m00*this.m33),this.m33*
(this.m00*this.m11-this.m01*this.m10)+this.m30*(this.m01*this.m13-this.m03*this.m11)+this.m31*(this.m03*this.m10-this.m00*this.m13),this.m03*(this.m11*this.m20-this.m10*this.m21)+this.m00*(this.m13*this.m21-this.m11*this.m23)+this.m01*(this.m10*this.m23-this.m13*this.m20),this.m10*(this.m22*this.m31-this.m21*this.m32)+this.m11*(this.m20*this.m32-this.m22*this.m30)+this.m12*(this.m21*this.m30-this.m20*this.m31),this.m20*(this.m02*this.m31-this.m01*this.m32)+this.m21*(this.m00*this.m32-this.m02*this.m30)+
this.m22*(this.m01*this.m30-this.m00*this.m31),this.m30*(this.m02*this.m11-this.m01*this.m12)+this.m31*(this.m00*this.m12-this.m02*this.m10)+this.m32*(this.m01*this.m10-this.m00*this.m11),this.m00*(this.m11*this.m22-this.m12*this.m21)+this.m01*(this.m12*this.m20-this.m10*this.m22)+this.m02*(this.m10*this.m21-this.m11*this.m20));this.scale(a);return this});c(c$,"set",function(a,b,d,c,f,h,e,j,l,p,n,q,m,k,s,t){this.m00=a;this.m01=b;this.m02=d;this.m03=c;this.m10=f;this.m11=h;this.m12=e;this.m13=j;this.m20=
l;this.m21=p;this.m22=n;this.m23=q;this.m30=m;this.m31=k;this.m32=s;this.m33=t},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N");c(c$,"determinant4",function(){return(this.m00*this.m11-this.m01*this.m10)*(this.m22*this.m33-this.m23*this.m32)-(this.m00*this.m12-this.m02*this.m10)*(this.m21*this.m33-this.m23*this.m31)+(this.m00*this.m13-this.m03*this.m10)*(this.m21*this.m32-this.m22*this.m31)+(this.m01*this.m12-this.m02*this.m11)*(this.m20*this.m33-this.m23*this.m30)-(this.m01*this.m13-this.m03*this.m11)*
(this.m20*this.m32-this.m22*this.m30)+(this.m02*this.m13-this.m03*this.m12)*(this.m20*this.m31-this.m21*this.m30)});c(c$,"scale",function(a){this.mul33(a);this.m03*=a;this.m13*=a;this.m23*=a;this.m30*=a;this.m31*=a;this.m32*=a;this.m33*=a},"~N");c(c$,"mul",function(a){this.mul2(this,a)},"JU.M4");c(c$,"mul2",function(a,b){this.set(a.m00*b.m00+a.m01*b.m10+a.m02*b.m20+a.m03*b.m30,a.m00*b.m01+a.m01*b.m11+a.m02*b.m21+a.m03*b.m31,a.m00*b.m02+a.m01*b.m12+a.m02*b.m22+a.m03*b.m32,a.m00*b.m03+a.m01*b.m13+a.m02*
b.m23+a.m03*b.m33,a.m10*b.m00+a.m11*b.m10+a.m12*b.m20+a.m13*b.m30,a.m10*b.m01+a.m11*b.m11+a.m12*b.m21+a.m13*b.m31,a.m10*b.m02+a.m11*b.m12+a.m12*b.m22+a.m13*b.m32,a.m10*b.m03+a.m11*b.m13+a.m12*b.m23+a.m13*b.m33,a.m20*b.m00+a.m21*b.m10+a.m22*b.m20+a.m23*b.m30,a.m20*b.m01+a.m21*b.m11+a.m22*b.m21+a.m23*b.m31,a.m20*b.m02+a.m21*b.m12+a.m22*b.m22+a.m23*b.m32,a.m20*b.m03+a.m21*b.m13+a.m22*b.m23+a.m23*b.m33,a.m30*b.m00+a.m31*b.m10+a.m32*b.m20+a.m33*b.m30,a.m30*b.m01+a.m31*b.m11+a.m32*b.m21+a.m33*b.m31,a.m30*
b.m02+a.m31*b.m12+a.m32*b.m22+a.m33*b.m32,a.m30*b.m03+a.m31*b.m13+a.m32*b.m23+a.m33*b.m33)},"JU.M4,JU.M4");c(c$,"transform",function(a){this.transform2(a,a)},"JU.T4");c(c$,"transform2",function(a,b){b.set4(this.m00*a.x+this.m01*a.y+this.m02*a.z+this.m03*a.w,this.m10*a.x+this.m11*a.y+this.m12*a.z+this.m13*a.w,this.m20*a.x+this.m21*a.y+this.m22*a.z+this.m23*a.w,this.m30*a.x+this.m31*a.y+this.m32*a.z+this.m33*a.w)},"JU.T4,JU.T4");c(c$,"rotTrans",function(a){this.rotTrans2(a,a)},"JU.T3");c(c$,"rotTrans2",
function(a,b){b.set(this.m00*a.x+this.m01*a.y+this.m02*a.z+this.m03,this.m10*a.x+this.m11*a.y+this.m12*a.z+this.m13,this.m20*a.x+this.m21*a.y+this.m22*a.z+this.m23);return b},"JU.T3,JU.T3");c(c$,"setAsXYRotation",function(a){this.setIdentity();var b=Math.cos(a);a=Math.sin(a);this.m22=b;this.m23=-a;this.m32=a;this.m33=b;return this},"~N");c(c$,"setAsYZRotation",function(a){this.setIdentity();var b=Math.cos(a);a=Math.sin(a);this.m00=b;this.m03=-a;this.m30=a;this.m33=b;return this},"~N");c(c$,"setAsXZRotation",
function(a){this.setIdentity();var b=Math.cos(a);a=Math.sin(a);this.m11=b;this.m13=-a;this.m31=a;this.m33=b;return this},"~N");e(c$,"equals",function(a){return!v(a,JU.M4)?!1:this.m00==a.m00&&this.m01==a.m01&&this.m02==a.m02&&this.m03==a.m03&&this.m10==a.m10&&this.m11==a.m11&&this.m12==a.m12&&this.m13==a.m13&&this.m20==a.m20&&this.m21==a.m21&&this.m22==a.m22&&this.m23==a.m23&&this.m30==a.m30&&this.m31==a.m31&&this.m32==a.m32&&this.m33==a.m33},"~O");e(c$,"hashCode",function(){return JU.T3.floatToIntBits(this.m00)^
JU.T3.floatToIntBits(this.m01)^JU.T3.floatToIntBits(this.m02)^JU.T3.floatToIntBits(this.m03)^JU.T3.floatToIntBits(this.m10)^JU.T3.floatToIntBits(this.m11)^JU.T3.floatToIntBits(this.m12)^JU.T3.floatToIntBits(this.m13)^JU.T3.floatToIntBits(this.m20)^JU.T3.floatToIntBits(this.m21)^JU.T3.floatToIntBits(this.m22)^JU.T3.floatToIntBits(this.m23)^JU.T3.floatToIntBits(this.m30)^JU.T3.floatToIntBits(this.m31)^JU.T3.floatToIntBits(this.m32)^JU.T3.floatToIntBits(this.m33)});e(c$,"toString",function(){return"[\n  ["+
this.m00+"\t"+this.m01+"\t"+this.m02+"\t"+this.m03+"]\n  ["+this.m10+"\t"+this.m11+"\t"+this.m12+"\t"+this.m13+"]\n  ["+this.m20+"\t"+this.m21+"\t"+this.m22+"\t"+this.m23+"]\n  ["+this.m30+"\t"+this.m31+"\t"+this.m32+"\t"+this.m33+"] ]"});c(c$,"round",function(a){this.m00=this.rnd(this.m00,a);this.m01=this.rnd(this.m01,a);this.m02=this.rnd(this.m02,a);this.m03=this.rnd(this.m03,a);this.m10=this.rnd(this.m10,a);this.m11=this.rnd(this.m11,a);this.m12=this.rnd(this.m12,a);this.m13=this.rnd(this.m13,
a);this.m20=this.rnd(this.m20,a);this.m21=this.rnd(this.m21,a);this.m22=this.rnd(this.m22,a);this.m23=this.rnd(this.m23,a);this.m30=this.rnd(this.m30,a);this.m31=this.rnd(this.m31,a);this.m32=this.rnd(this.m32,a);this.m33=this.rnd(this.m33,a);return this},"~N");c(c$,"rnd",function(a,b){return Math.abs(a)<b?0:a},"~N,~N")});s("JU");t(["java.io.OutputStream","javajs.api.GenericOutputChannel"],"JU.OC","java.io.BufferedWriter $.ByteArrayOutputStream $.OutputStreamWriter java.lang.Float JU.Base64 $.SB".split(" "),
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";base64,".equals(b))b=null,this.os0=c,c=null;this.os=c;this.isLocalFile=null!=b&&!JU.OC.isRemote(b);d&&(!this.$isBase64&&null!=c)&&(this.bw=new java.io.BufferedWriter(new java.io.OutputStreamWriter(c)));return this},"javajs.api.BytePoster,~S,~B,java.io.OutputStream");c(c$,"setBytes",function(a){this.bytes=a;return this},"~A");c(c$,"getFileName",function(){return this.fileName});c(c$,"getName",function(){return null==this.fileName?null:this.fileName.substring(this.fileName.lastIndexOf("/")+1)});c(c$,
"getByteCount",function(){return this.byteCount});c(c$,"setType",function(a){this.type=a},"~S");c(c$,"getType",function(){return this.type});c(c$,"append",function(a){try{if(null!=this.bw)this.bw.write(a);else if(null==this.os)null==this.sb&&(this.sb=new JU.SB),this.sb.append(a);else{var b=a.getBytes();this.os.write(b,0,b.length);this.byteCount+=b.length;return this}}catch(d){if(!y(d,java.io.IOException))throw d;}this.byteCount+=a.length;return this},"~S");e(c$,"reset",function(){this.sb=null;this.initOS()});
c(c$,"initOS",function(){if(null!=this.sb){var a=this.sb.toString();this.reset();this.append(a)}else{try{this.os=null,null==this.os&&(this.os=new java.io.ByteArrayOutputStream),null!=this.bw&&(this.bw.close(),this.bw=new java.io.BufferedWriter(new java.io.OutputStreamWriter(this.os)))}catch(b){if(y(b,Exception))System.out.println(b.toString());else throw b;}this.byteCount=0}});e(c$,"writeByteAsInt",function(a){null==this.os&&this.initOS();this.os.writeByteAsInt(a);this.byteCount++},"~N");e(c$,"write",
function(a,b,d){null==this.os&&this.initOS();0>d&&(d=a.length-b);try{this.os.write(a,b,d)}catch(c){if(!y(c,java.io.IOException))throw c;}this.byteCount+=d},"~A,~N,~N");e(c$,"writeShort",function(a){this.isBigEndian()?(this.writeByteAsInt(a>>8),this.writeByteAsInt(a)):(this.writeByteAsInt(a),this.writeByteAsInt(a>>8))},"~N");e(c$,"writeLong",function(a){this.isBigEndian()?(this.writeInt(a>>32&4294967295),this.writeInt(a&4294967295)):(this.writeByteAsInt(a>>56),this.writeByteAsInt(a>>48),this.writeByteAsInt(a>>
40),this.writeByteAsInt(a>>32),this.writeByteAsInt(a>>24),this.writeByteAsInt(a>>16),this.writeByteAsInt(a>>8),this.writeByteAsInt(a))},"~N");c(c$,"cancel",function(){this.isCanceled=!0;this.closeChannel()});e(c$,"closeChannel",function(){if(this.closed)return null;try{null!=this.bw?(this.bw.flush(),this.bw.close()):null!=this.os&&(this.os.flush(),this.os.close()),null!=this.os0&&this.isCanceled&&(this.os0.flush(),this.os0.close())}catch(a){if(!y(a,Exception))throw a;}if(this.isCanceled)return this.closed=
!0,null;if(null==this.fileName){if(this.$isBase64){var b=this.getBase64();null!=this.os0&&(this.os=this.os0,this.append(b));this.sb=new JU.SB;this.sb.append(b);this.$isBase64=!1;return this.closeChannel()}return null==this.sb?null:this.sb.toString()}this.closed=!0;if(!this.isLocalFile){b=this.postByteArray();if(null==b||b.startsWith("java.net"))this.byteCount=-1;return b}var d=b=null,b=self.J2S||Jmol,d="function"==typeof this.fileName?this.fileName:null;if(null!=b){var c=null==this.sb?this.toByteArray():
this.sb.toString();null==d?b.doAjax(this.fileName,null,c,null==this.sb):b.applyFunc(this.fileName,c)}return null});c(c$,"isBase64",function(){return this.$isBase64});c(c$,"getBase64",function(){return JU.Base64.getBase64(this.toByteArray()).toString()});c(c$,"toByteArray",function(){return null!=this.bytes?this.bytes:v(this.os,java.io.ByteArrayOutputStream)?this.os.toByteArray():null});c(c$,"close",function(){this.closeChannel()});e(c$,"toString",function(){if(null!=this.bw)try{this.bw.flush()}catch(a){if(!y(a,
java.io.IOException))throw a;}return null!=this.sb?this.closeChannel():this.byteCount+" bytes"});c(c$,"postByteArray",function(){var a=null==this.sb?this.toByteArray():this.sb.toString().getBytes();return this.bytePoster.postByteArray(this.fileName,a)});c$.isRemote=c(c$,"isRemote",function(a){if(null==a)return!1;a=JU.OC.urlTypeIndex(a);return 0<=a&&5!=a},"~S");c$.isLocal=c(c$,"isLocal",function(a){if(null==a)return!1;a=JU.OC.urlTypeIndex(a);return 0>a||5==a},"~S");c$.urlTypeIndex=c(c$,"urlTypeIndex",
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function(a){if(null==a)return this.vwr.initialEndIndex=this.vwr.initialStartIndex=-1,this.appletFrame.getJSVPanel(this.vwr,null);a=this.appletFrame.getJSVPanel(this.vwr,a);this.vwr.initialEndIndex=this.vwr.initialStartIndex=-1;a.getPanelData().addListener(this);this.vwr.parameters.setFor(a,null,!0);return a},"JU.Lst");e(c$,"siSetPropertiesFromPreferences",function(){this.vwr.checkAutoIntegrate()},"JSV.api.JSVPanel,~B");e(c$,"siSetLoaded",function(){},"~S,~S");e(c$,"siSetMenuEnables",function(){},
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D(c$,"CREDITS","Authors:\nProf. Robert M. Hanson,\nD. Facey, K. Bryan, C. Walters, Prof. Robert J. Lancashire and\nvolunteer developers through sourceforge.")});s("JSV.app");t(["J.api.GenericMouseInterface"],"JSV.app.GenericMouse",["JU.Logger"],function(){c$=k(function(){this.jsvp=this.pd=null;this.modifiersWhenPressed10=this.yWhenPressed=this.xWhenPressed=0;this.disposed=this.isMouseDown=!1;m(this,arguments)},JSV.app,"GenericMouse",null,J.api.GenericMouseInterface);n(c$,function(a){this.jsvp=a;this.pd=
a.getPanelData()},"JSV.api.JSVPanel");e(c$,"clear",function(){});e(c$,"processEvent",function(a,b,d,c,f){if(null==this.pd)return!this.disposed&&(501==a&&0!=(c&4))&&this.jsvp.showMenu(b,d),!0;507!=a&&(c=JSV.app.GenericMouse.applyLeftMouse(c));switch(a){case 507:this.wheeled(f,b,c|32);break;case 501:this.xWhenPressed=b;this.yWhenPressed=d;this.modifiersWhenPressed10=c;this.pressed(f,b,d,c,!1);break;case 506:this.dragged(f,b,d,c);break;case 504:this.entered(f,b,d);break;case 505:this.exited(f,b,d);break;
case 503:this.moved(f,b,d,c);break;case 502:this.released(f,b,d,c);b==this.xWhenPressed&&(d==this.yWhenPressed&&c==this.modifiersWhenPressed10)&&this.clicked(f,b,d,c,1);break;default:return!1}return!0},"~N,~N,~N,~N,~N");c(c$,"mouseEntered",function(a){this.entered(a.getWhen(),a.getX(),a.getY())},"java.awt.event.MouseEvent");c(c$,"mouseExited",function(a){this.exited(a.getWhen(),a.getX(),a.getY())},"java.awt.event.MouseEvent");c(c$,"mouseMoved",function(a){this.moved(a.getWhen(),a.getX(),a.getY(),
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a.getX(),a.getY(),a.getModifiers(),a.getClickCount())},"java.awt.event.MouseEvent");c(c$,"mouseWheelMoved",function(a){a.consume();this.wheeled(a.getWhen(),a.getWheelRotation(),a.getModifiers()|32)},"java.awt.event.MouseWheelEvent");c(c$,"keyTyped",function(a){if(null!=this.pd){var b=a.getKeyChar(),d=a.getModifiers();JU.Logger.info("MouseManager keyTyped: "+b+" "+(0+b.charCodeAt(0))+" "+d);this.pd.keyTyped(b.charCodeAt(0),d)&&a.consume()}},"java.awt.event.KeyEvent");c(c$,"keyPressed",function(a){null!=
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function(a,b,d,c){null!=this.pd&&(this.isMouseDown?this.pd.mouseAction(1,a,b,d,0,JSV.app.GenericMouse.applyLeftMouse(c)):this.pd.mouseAction(0,a,b,d,0,c&-29))},"~N,~N,~N,~N");c(c$,"wheeled",function(a,b,d){null!=this.pd&&this.pd.mouseAction(3,a,0,b,0,d)},"~N,~N,~N");c(c$,"pressed",function(a,b,d,c){null==this.pd?this.disposed||this.jsvp.showMenu(b,d):(this.isMouseDown=!0,this.pd.mouseAction(4,a,b,d,0,c))},"~N,~N,~N,~N,~B");c(c$,"released",function(a,b,d,c){null!=this.pd&&(this.isMouseDown=!1,this.pd.mouseAction(5,
a,b,d,0,c))},"~N,~N,~N,~N");c(c$,"dragged",function(a,b,d,c){null!=this.pd&&(20==(c&20)&&(c=c&-5|2),this.pd.mouseAction(1,a,b,d,0,c))},"~N,~N,~N,~N");c$.applyLeftMouse=c(c$,"applyLeftMouse",function(a){return 0==(a&28)?a|16:a},"~N");e(c$,"processTwoPointGesture",function(){},"~A");e(c$,"dispose",function(){this.jsvp=this.pd=null;this.disposed=!0})});s("JSV.appletjs");t(["javajs.api.JSInterface","JSV.api.AppletFrame","$.JSVAppletInterface"],"JSV.appletjs.JSVApplet","java.lang.Boolean java.net.URL java.util.Hashtable JU.PT JSV.app.JSVApp JSV.js2d.JsMainPanel $.JsPanel JU.Logger".split(" "),
function(){c$=k(function(){this.viewer=this.app=null;this.isStandalone=!1;this.htParams=this.viewerOptions=null;m(this,arguments)},JSV.appletjs,"JSVApplet",null,[JSV.api.JSVAppletInterface,JSV.api.AppletFrame,javajs.api.JSInterface]);n(c$,function(a){null==a&&(a=new java.util.Hashtable);this.viewerOptions=a;this.htParams=new java.util.Hashtable;var b;for(a=a.entrySet().iterator();a.hasNext()&&((b=a.next())||1);)this.htParams.put(b.getKey().toLowerCase(),b.getValue());this.init()},"java.util.Map");
c(c$,"init",function(){this.app=new JSV.app.JSVApp(this,!0);this.initViewer();null!=this.app.appletReadyCallbackFunctionName&&null!=this.viewer.fullName&&this.callToJavaScript(this.app.appletReadyCallbackFunctionName,w(-1,[this.viewer.appletName,this.viewer.fullName,Boolean.TRUE,this]))});c(c$,"initViewer",function(){this.viewer=this.app.vwr;this.setLogging();this.viewerOptions.remove("debug");var a=this.viewerOptions.get("display"),a=document.getElementById(a);this.viewer.setDisplay(a);JU.Logger.info(this.getAppletInfo())});
c(c$,"setLogging",function(){var a=this.getValue("logLevel",this.getBooleanValue("debug",!1)?"5":"4").charCodeAt(0)-48;4!=a&&System.out.println("setting logLevel="+a+' -- To change, use script "set logLevel [0-5]"');JU.Logger.setLogLevel(a)});c(c$,"getParameter",function(a){a=this.htParams.get(a.toLowerCase());return null==a?null:String.instantialize(a.toString())},"~S");c(c$,"getBooleanValue",function(a,b){var d=this.getValue(a,b?"true":"");return d.equalsIgnoreCase("true")||d.equalsIgnoreCase("on")||
d.equalsIgnoreCase("yes")},"~S,~B");c(c$,"getValue",function(a,b){var d=this.getParameter(a);System.out.println("getValue "+a+" = "+d);return null!=d?d:b},"~S,~S");e(c$,"isPro",function(){return this.app.isPro()});e(c$,"isSigned",function(){return this.app.isSigned()});e(c$,"finalize",function(){System.out.println("JSpecView "+this+" finalized")});e(c$,"destroy",function(){this.app.dispose();this.app=null});c(c$,"getParameter",function(a,b){return this.isStandalone?System.getProperty(a,b):null!=this.getParameter(a)?
this.getParameter(a):b},"~S,~S");e(c$,"getAppletInfo",function(){return JSV.app.JSVApp.getAppletInfo()});e(c$,"getSolnColour",function(){return this.app.getSolnColour()});e(c$,"getCoordinate",function(){return this.app.getCoordinate()});e(c$,"loadInline",function(a){this.app.loadInline(a)},"~S");c(c$,"$export",function(a,b){return this.app.exportSpectrum(a,b)},"~S,~N");e(c$,"exportSpectrum",function(a,b){return this.app.exportSpectrum(a,b)},"~S,~N");e(c$,"setFilePath",function(a){this.app.setFilePath(a)},
"~S");e(c$,"setSpectrumNumber",function(a){this.app.setSpectrumNumber(a)},"~N");e(c$,"toggleGrid",function(){this.app.toggleGrid()});e(c$,"toggleCoordinate",function(){this.app.toggleCoordinate()});e(c$,"togglePointsOnly",function(){this.app.togglePointsOnly()});e(c$,"toggleIntegration",function(){this.app.toggleIntegration()});e(c$,"addHighlight",function(a,b,d,c,f,h){this.app.addHighlight(a,b,d,c,f,h)},"~N,~N,~N,~N,~N,~N");e(c$,"removeAllHighlights",function(){this.app.removeAllHighlights()});e(c$,
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"~O");e(c$,"startHoverWatcher",function(){},"~B");e(c$,"update",function(){this.app.vwr.updateJS()});c(c$,"openFile",function(a){this.app.vwr.openFile(a,!0);return null},"~S");e(c$,"openFileAsyncSpecial",function(a,b){this.app.vwr.openFileAsyncSpecial(a,b)},"~S,~N");e(c$,"processTwoPointGesture",function(a){this.app.vwr.processTwoPointGesture(a)},"~A");e(c$,"setScreenDimension",function(a,b){this.app.vwr.setScreenDimension(a,b)},"~N,~N");e(c$,"checkScript",function(a){a=this.app.checkScript(a);null!=
a&&System.out.println(a);return a},"~S")});s("JSV.common");t(["java.lang.Enum","JSV.common.Coordinate"],"JSV.common.Annotation",["java.lang.Double","JU.CU"],function(){c$=k(function(){this.text="";this.is2D=this.$isPixels=!1;this.offsetY=this.offsetX=0;this.spec=null;m(this,arguments)},JSV.common,"Annotation",JSV.common.Coordinate);c(c$,"setA",function(a,b,d,c,f,h,e,j){this.set(a,b);this.spec=d;this.text=c;this.$isPixels=f;this.is2D=h;this.offsetX=e;this.offsetY=j;return this},"~N,~N,JSV.common.Spectrum,~S,~B,~B,~N,~N");
c(c$,"setSpec",function(a){this.spec=a;return this},"JSV.common.Spectrum");c(c$,"addSpecShift",function(a){this.setXVal(this.getXVal()+a)},"~N");c(c$,"isPixels",function(){return this.$isPixels});e(c$,"toString",function(){return"["+this.getXVal()+", "+this.getYVal()+","+this.text+"]"});c$.getColoredAnnotation=c(c$,"getColoredAnnotation",function(a,b,d,c){var f,h=0,e=1,j=2,l=3,p=d.size();try{switch(p){default:return null;case 1:f=d.get(0);h=e=-1;'"'==f.charAt(0)?(l=0,j=-1):(j=0,l=-1);break;case 2:h=
e=-1;f=d.get(0);'"'==f.charAt(0)?(l=0,j=1):(j=0,l=1);break;case 3:case 4:f=d.get(2),'"'==f.charAt(0)?(l=2,j=4==p?3:-1):(j=2,l=4==p?3:-1),f=d.get(2),'"'==f.charAt(0)?(l=2,j=-1):(j=2,l=-1)}if(null==c&&(0>h||0>e||0>l||0>j))return null;var n=0>h?c.getXVal():Double.$valueOf(d.get(h)).doubleValue(),m=0>e?c.getYVal():Double.$valueOf(d.get(e)).doubleValue(),q=0>j?c.getColor():a.getColor1(JU.CU.getArgbFromString(d.get(j))),k;0>l?k=c.text:(k=d.get(l),'"'==k.charAt(0)&&(k=k.substring(1,k.length-1)));return(new JSV.common.ColoredAnnotation).setCA(n,
m,b,k,q,!1,!1,0,0)}catch(s){if(y(s,Exception))return null;throw s;}},"J.api.GenericGraphics,JSV.common.Spectrum,JU.Lst,JSV.common.Annotation");A(self.c$);c$=u(JSV.common.Annotation,"AType",Enum);q(c$,"Integration",0,[]);q(c$,"PeakList",1,[]);q(c$,"Measurements",2,[]);q(c$,"OverlayLegend",3,[]);q(c$,"Views",4,[]);q(c$,"NONE",5,[]);c$=B()});s("JSV.common");t(["JSV.common.Annotation"],"JSV.common.ColoredAnnotation",null,function(){c$=k(function(){this.color=null;m(this,arguments)},JSV.common,"ColoredAnnotation",
JSV.common.Annotation);c(c$,"getColor",function(){return this.color});n(c$,function(){z(this,JSV.common.ColoredAnnotation,[])});c(c$,"setCA",function(a,b,d,c,f,h,e,j,l){this.setA(a,b,d,c,h,e,j,l);this.color=f;return this},"~N,~N,JSV.common.Spectrum,~S,javajs.api.GenericColor,~B,~B,~N,~N")});s("JSV.common");t(["JSV.common.Parameters"],"JSV.common.ColorParameters",["java.util.Hashtable","$.StringTokenizer","JU.CU","$.Lst","JSV.common.ScriptToken"],function(){c$=k(function(){this.plotColors=this.elementColors=
this.displayFontName=this.titleFontName=null;this.isDefault=!1;m(this,arguments)},JSV.common,"ColorParameters",JSV.common.Parameters);n(c$,function(){z(this,JSV.common.ColorParameters,[]);JSV.common.ColorParameters.BLACK=this.getColor3(0,0,0);JSV.common.ColorParameters.RED=this.getColor3(255,0,0);JSV.common.ColorParameters.LIGHT_GRAY=this.getColor3(200,200,200);JSV.common.ColorParameters.DARK_GRAY=this.getColor3(80,80,80);JSV.common.ColorParameters.BLUE=this.getColor3(0,0,255);JSV.common.ColorParameters.WHITE=
this.getColor3(255,255,255);this.elementColors=new java.util.Hashtable;this.setColor(JSV.common.ScriptToken.TITLECOLOR,JSV.common.ColorParameters.BLACK);this.setColor(JSV.common.ScriptToken.UNITSCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.SCALECOLOR,JSV.common.ColorParameters.BLACK);this.setColor(JSV.common.ScriptToken.COORDINATESCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.GRIDCOLOR,JSV.common.ColorParameters.LIGHT_GRAY);this.setColor(JSV.common.ScriptToken.PLOTCOLOR,
JSV.common.ColorParameters.BLUE);this.setColor(JSV.common.ScriptToken.PLOTAREACOLOR,JSV.common.ColorParameters.WHITE);this.setColor(JSV.common.ScriptToken.BACKGROUNDCOLOR,this.getColor3(192,192,192));this.setColor(JSV.common.ScriptToken.INTEGRALPLOTCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.PEAKTABCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.HIGHLIGHTCOLOR,JSV.common.ColorParameters.DARK_GRAY);for(var a=0;8>a;a++)JSV.common.ColorParameters.defaultPlotColors[a]=
this.getColorFromString(JSV.common.ColorParameters.defaultPlotColorNames[a]);this.plotColors=Array(8);System.arraycopy(JSV.common.ColorParameters.defaultPlotColors,0,this.plotColors,0,8)});c(c$,"setFor",function(a,b,d){null==b&&(b=this);d&&a.getPanelData().setBooleans(b,null);a=a.getPanelData();null!=a.getCurrentPlotColor(1)&&a.setPlotColors(this.plotColors);a.setColorOrFont(b,null)},"JSV.api.JSVPanel,JSV.common.ColorParameters,~B");c(c$,"set",function(a,b,d){var c=null;switch(b){default:this.setP(a,
b,d);return;case JSV.common.ScriptToken.PLOTCOLORS:null==a?this.getPlotColors(d):a.setPlotColors(this.getPlotColors(d));return;case JSV.common.ScriptToken.BACKGROUNDCOLOR:case JSV.common.ScriptToken.COORDINATESCOLOR:case JSV.common.ScriptToken.GRIDCOLOR:case JSV.common.ScriptToken.HIGHLIGHTCOLOR:case JSV.common.ScriptToken.INTEGRALPLOTCOLOR:case JSV.common.ScriptToken.PEAKTABCOLOR:case JSV.common.ScriptToken.PLOTAREACOLOR:case JSV.common.ScriptToken.PLOTCOLOR:case JSV.common.ScriptToken.SCALECOLOR:case JSV.common.ScriptToken.TITLECOLOR:case JSV.common.ScriptToken.UNITSCOLOR:c=
this.setColorFromString(b,d);break;case JSV.common.ScriptToken.TITLEFONTNAME:case JSV.common.ScriptToken.DISPLAYFONTNAME:c=this.getFontName(b,d)}null!=a&&null!=c&&a.setColorOrFont(this,b)},"JSV.common.PanelData,JSV.common.ScriptToken,~S");c(c$,"getElementColor",function(a){return this.elementColors.get(a)},"JSV.common.ScriptToken");c(c$,"setColor",function(a,b){null!=b&&this.elementColors.put(a,b);return b},"JSV.common.ScriptToken,javajs.api.GenericColor");c(c$,"copy",function(){return this.copy(this.name)});
c(c$,"setElementColors",function(a){this.displayFontName=a.displayFontName;var b;for(a=a.elementColors.entrySet().iterator();a.hasNext()&&((b=a.next())||1);)this.setColor(b.getKey(),b.getValue());return this},"JSV.common.ColorParameters");c(c$,"getColorFromString",function(a){return this.getColor1(JU.CU.getArgbFromString(a))},"~S");c(c$,"getPlotColors",function(a){if(null==a)return this.plotColors[0]=this.getElementColor(JSV.common.ScriptToken.PLOTCOLOR),this.plotColors;a=new java.util.StringTokenizer(a,
",;.- ");var b=new JU.Lst;try{for(;a.hasMoreTokens();)b.addLast(this.getColorFromString(a.nextToken()))}catch(d){if(y(d,Exception))return null;throw d;}return b.toArray(Array(b.size()))},"~S");c(c$,"setColorFromString",function(a,b){return this.setColor(a,this.getColorFromString(b))},"JSV.common.ScriptToken,~S");c(c$,"getFontName",function(a,b){var d=this.isValidFontName(b);switch(a){case JSV.common.ScriptToken.TITLEFONTNAME:return d?this.titleFontName=b:this.titleFontName;case JSV.common.ScriptToken.DISPLAYFONTNAME:return d?
this.displayFontName=b:this.displayFontName}return null},"JSV.common.ScriptToken,~S");D(c$,"BLACK",null,"RED",null,"LIGHT_GRAY",null,"DARK_GRAY",null,"BLUE",null,"WHITE",null);c$.defaultPlotColors=c$.prototype.defaultPlotColors=Array(8);c$.defaultPlotColorNames=c$.prototype.defaultPlotColorNames=w(-1,"black darkGreen darkred orange magenta cyan maroon darkGray".split(" "))});s("JSV.common");c$=u(JSV.common,"CoordComparator",null,java.util.Comparator);e(c$,"compare",function(a,b){return a.getXVal()>
b.getXVal()?1:a.getXVal()<b.getXVal()?-1:0},"JSV.common.Coordinate,JSV.common.Coordinate");s("JSV.common");t(["JSV.common.CoordComparator"],"JSV.common.Coordinate",["java.lang.Double","java.util.Arrays","$.StringTokenizer","JU.DF","$.Lst"],function(){c$=k(function(){this.yVal=this.xVal=0;m(this,arguments)},JSV.common,"Coordinate");n(c$,function(){});c(c$,"set",function(a,b){this.xVal=a;this.yVal=b;return this},"~N,~N");c(c$,"getXVal",function(){return this.xVal});c(c$,"getYVal",function(){return this.yVal});
c(c$,"getXString",function(){return JU.DF.formatDecimalTrimmed(this.xVal,8)});c(c$,"getYString",function(){return JU.DF.formatDecimalTrimmed(this.yVal,8)});c(c$,"setXVal",function(a){this.xVal=a},"~N");c(c$,"setYVal",function(a){this.yVal=a},"~N");c(c$,"copy",function(){return(new JSV.common.Coordinate).set(this.xVal,this.yVal)});c(c$,"equals",function(a){return a.xVal==this.xVal&&a.yVal==this.yVal},"JSV.common.Coordinate");e(c$,"toString",function(){return"["+this.xVal+", "+this.yVal+"]"});c$.isYInRange=
c(c$,"isYInRange",function(a,b,d){return JSV.common.Coordinate.getMinY(a,0,a.length-1)>=b&&JSV.common.Coordinate.getMaxY(a,0,a.length-1)>=d},"~A,~N,~N");c$.normalise=c(c$,"normalise",function(a,b,d){var c=Array(a.length),f=JSV.common.Coordinate.getMinY(a,0,a.length-1);d=(JSV.common.Coordinate.getMaxY(a,0,a.length-1)-f)/(d-b);for(var h=0;h<a.length;h++)c[h]=(new JSV.common.Coordinate).set(a[h].getXVal(),(a[h].getYVal()-f)/d-b);return c},"~A,~N,~N");c$.reverse=c(c$,"reverse",function(a){for(var b=a.length,
d=0;d<b;d++){var c=a[d];a[d]=a[--b];a[b]=c}return a},"~A");c$.parseDSV=c(c$,"parseDSV",function(a,b,d){var c,f=c=0,h=new JU.Lst;for(a=new java.util.StringTokenizer(a," \t\n\r\f,;");a.hasMoreTokens();)c=a.nextToken().trim(),f=a.nextToken().trim(),c=Double.parseDouble(c),f=Double.parseDouble(f),c=(new JSV.common.Coordinate).set(c*b,f*d),h.addLast(c);b=Array(h.size());return h.toArray(b)},"~S,~N,~N");c$.deltaX=c(c$,"deltaX",function(a,b,d){return(a-b)/(d-1)},"~N,~N,~N");c$.removeScale=c(c$,"removeScale",
function(a,b,d){JSV.common.Coordinate.applyScale(a,1/b,1/d)},"~A,~N,~N");c$.applyScale=c(c$,"applyScale",function(a,b,d){if(1!=b||1!=d)for(var c=0;c<a.length;c++)a[c].setXVal(a[c].getXVal()*b),a[c].setYVal(a[c].getYVal()*d)},"~A,~N,~N");c$.applyShiftReference=c(c$,"applyShiftReference",function(a,b,d,c,f,h,e){if(!(b>a.length||0>b)){switch(e){case 0:f=a[a.length-b].getXVal()-f*h;break;case 1:f=d-f*h;break;case 2:f=c+f}for(d=0;d<a.length;d++)b=a[d],b.setXVal(b.getXVal()-f),a[d]=b}},"~A,~N,~N,~N,~N,~N,~N");
c$.getMinX=c(c$,"getMinX",function(a,b,d){for(var c=1.7976931348623157E308;b<=d;b++){var f=a[b].getXVal();f<c&&(c=f)}return c},"~A,~N,~N");c$.getMinX=c(c$,"getMinX",function(a,b){for(var d=1.7976931348623157E308,c=0;c<a.size();c++){var f=a.get(c).getXYCoords(),f=JSV.common.Coordinate.getMinX(f,b.getStartingPointIndex(c),b.getEndingPointIndex(c));f<d&&(d=f)}return d},"JU.Lst,JSV.common.ViewData");c$.getMaxX=c(c$,"getMaxX",function(a,b,d){for(var c=-1.7976931348623157E308;b<=d;b++){var f=a[b].getXVal();
f>c&&(c=f)}return c},"~A,~N,~N");c$.getMaxX=c(c$,"getMaxX",function(a,b){for(var d=-1.7976931348623157E308,c=0;c<a.size();c++){var f=a.get(c).getXYCoords(),f=JSV.common.Coordinate.getMaxX(f,b.getStartingPointIndex(c),b.getEndingPointIndex(c));f>d&&(d=f)}return d},"JU.Lst,JSV.common.ViewData");c$.getMinY=c(c$,"getMinY",function(a,b,d){for(var c=1.7976931348623157E308;b<=d;b++){var f=a[b].getYVal();f<c&&(c=f)}return c},"~A,~N,~N");c$.getMinYUser=c(c$,"getMinYUser",function(a,b){for(var d=1.7976931348623157E308,
c=0;c<a.size();c++){var f=a.get(c).getUserYFactor(),h=a.get(c).getYRef(),e=a.get(c).getXYCoords(),f=(JSV.common.Coordinate.getMinY(e,b.getStartingPointIndex(c),b.getEndingPointIndex(c))-h)*f+h;f<d&&(d=f)}return d},"JU.Lst,JSV.common.ViewData");c$.getMaxY=c(c$,"getMaxY",function(a,b,d){for(var c=-1.7976931348623157E308;b<=d;b++){var f=a[b].getYVal();f>c&&(c=f)}return c},"~A,~N,~N");c$.getMaxYUser=c(c$,"getMaxYUser",function(a,b){for(var d=-1.7976931348623157E308,c=0;c<a.size();c++){var f=a.get(c).getUserYFactor(),
h=a.get(c).getYRef(),e=a.get(c).getXYCoords(),f=(JSV.common.Coordinate.getMaxY(e,b.getStartingPointIndex(c),b.getEndingPointIndex(c))-h)*f+h;f>d&&(d=f)}return d},"JU.Lst,JSV.common.ViewData");c$.getYValueAt=c(c$,"getYValueAt",function(a,b){var d=JSV.common.Coordinate.getNearestIndexForX(a,b);if(0==d||d==a.length)return NaN;var c=a[d].getXVal(),f=a[d-1].getXVal(),h=a[d].getYVal(),d=a[d-1].getYVal();return c==f?h:d+(h-d)/(c-f)*(b-f)},"~A,~N");c$.intoRange=c(c$,"intoRange",function(a,b,d){return Math.max(Math.min(a,
d),b)},"~N,~N,~N");c$.getNearestIndexForX=c(c$,"getNearestIndexForX",function(a,b){var d=(new JSV.common.Coordinate).set(b,0),d=java.util.Arrays.binarySearch(a,d,JSV.common.Coordinate.c);0>d&&(d=-1-d);return 0>d?0:d>a.length-1?a.length-1:d},"~A,~N");c$.findXForPeakNearest=c(c$,"findXForPeakNearest",function(a,b,d){b=JSV.common.Coordinate.getNearestIndexForX(a,b);for(d=d?-1:1;b<a.length-1&&0<d*(a[b+1].yVal-a[b].yVal);)b++;for(;1<=b&&0<d*(a[b-1].yVal-a[b].yVal);)b--;return 0==b||b==a.length-1?a[b].xVal:
JSV.common.Coordinate.parabolicInterpolation(a,b)},"~A,~N,~B");c$.parabolicInterpolation=c(c$,"parabolicInterpolation",function(a,b){var d=a[b-1].yVal,c=a[b+1].yVal;return a[b].xVal+(d-c)/2/(d-2*a[b].yVal+c)*(a[b+1].xVal-a[b].xVal)},"~A,~N");c$.getPickedCoordinates=c(c$,"getPickedCoordinates",function(a,b,d,c){if(null==b)return!1;var f=b.getXVal();d.setXVal(f);d.setYVal(b.getYVal());if(null==c)return!0;b=JSV.common.Coordinate.getNearestIndexForX(a,f);c.setXVal(a[b].getXVal());c.setYVal(a[b].getYVal());
return!0},"~A,JSV.common.Coordinate,JSV.common.Coordinate,JSV.common.Coordinate");c$.shiftX=c(c$,"shiftX",function(a,b){for(var d=a.length;0<=--d;)a[d].xVal+=b},"~A,~N");c$.getNearestXWithYAbove=c(c$,"getNearestXWithYAbove",function(a,b,d,c,f){b=JSV.common.Coordinate.getNearestIndexForX(a,b);var h=c?-1:1;if(f)for(;b<a.length&&0>h*(a[b].yVal-d);)b++;else for(;0<=b&&0>h*(a[b].yVal-d);)b--;return-1==b||b==a.length?NaN:JSV.common.Coordinate.findXForPeakNearest(a,a[b].getXVal(),c)},"~A,~N,~N,~B,~B");c$.c=
c$.prototype.c=new JSV.common.CoordComparator});s("JSV.common");t(["java.lang.Enum"],"JSV.common.ExportType",null,function(){c$=u(JSV.common,"ExportType",Enum);c$.getType=c(c$,"getType",function(a){a=a.toUpperCase();if(a.equalsIgnoreCase("Original..."))return JSV.common.ExportType.SOURCE;if(a.startsWith("XML"))return JSV.common.ExportType.AML;for(var b,d=0,c=JSV.common.ExportType.values();d<c.length&&((b=c[d])||1);d++)if(b.name().equals(a))return b;return JSV.common.ExportType.UNK},"~S");c$.isExportMode=
c(c$,"isExportMode",function(a){return JSV.common.ExportType.getType(a)!==JSV.common.ExportType.UNK},"~S");q(c$,"UNK",0,[]);q(c$,"SOURCE",1,[]);q(c$,"DIF",2,[]);q(c$,"FIX",3,[]);q(c$,"SQZ",4,[]);q(c$,"PAC",5,[]);q(c$,"XY",6,[]);q(c$,"DIFDUP",7,[]);q(c$,"PNG",8,[]);q(c$,"JPG",9,[]);q(c$,"SVG",10,[]);q(c$,"SVGI",11,[]);q(c$,"CML",12,[]);q(c$,"AML",13,[]);q(c$,"PDF",14,[])});s("JSV.common");t(["JSV.common.XYScaleConverter","java.util.Hashtable","JU.BS","$.Lst","JSV.common.Coordinate"],"JSV.common.GraphSet",
"java.lang.Boolean $.Double $.Float JU.DF $.PT JSV.common.Annotation $.ColorParameters $.ColoredAnnotation $.ImageView $.Integral $.IntegralData $.Measurement $.MeasurementData $.PanelData $.Parameters $.PeakData $.PeakPickEvent $.PlotWidget $.ScaleData $.ScriptToken $.Spectrum $.ViewData JU.Logger".split(" "),function(){c$=k(function(){this.gs2dLinkedY=this.gs2dLinkedX=null;this.cur1D2Locked=!1;this.spectra=this.highlights=null;this.allowStacking=this.isSplittable=!0;this.widgets=this.graphsTemp=
this.pendingIntegral=this.pendingMeasurement=this.lastAnnotation=this.selectedSpectrumIntegrals=this.selectedSpectrumMeasurements=this.annotations=null;this.haveSingleYScale=this.isLinked=!1;this.iSpectrumClicked=this.iSpectrumMovedTo=0;this.iSpectrumSelected=-1;this.stackSelected=!1;this.viewData=this.bsSelected=null;this.reversePlot=!1;this.nSplit=1;this.yStackOffsetPercent=0;this.showAllStacked=!0;this.pd=this.imageView=this.viewList=null;this.sticky2Dcursor=!1;this.nSpectra=0;this.fracY=this.fracX=
1;this.fY0=this.fX0=0;this.cur2Dy=this.cur1D2x2=this.cur1D2x1=this.cur2Dx1=this.cur2Dx0=this.pin2Dy01=this.pin2Dx01=this.pin2Dy1=this.pin2Dy0=this.pin2Dx1=this.pin2Dx0=this.pin1Dy01=this.pin1Dx01=this.pin1Dy1=this.pin1Dy0=this.pin1Dx1=this.pin1Dx0=this.zoomBox2D=this.zoomBox1D=null;this.xPixels0=this.xPixel10=this.yPixels=this.xPixels=this.yPixel000=this.yPixel11=this.xPixel11=this.yPixel00=this.xPixel00=this.yHArrows=this.xHArrows=this.xVArrows=this.yPixel1=this.xPixel1=this.yPixel0=this.xPixel0=
0;this.allowStackedYScale=!0;this.drawXAxisLeftToRight=!1;this.xAxisLeftToRight=!0;this.iPreviousSpectrumClicked=-1;this.zoomEnabled=this.$haveSelectedSpectrum=!1;this.currentZoomIndex=0;this.lastClickX=NaN;this.lastPixelX=2147483647;this.bottom=this.left=this.top=this.right=this.width=this.height=0;this.coordTemp=this.piMouseOver=null;this.FONT_PLAIN=0;this.FONT_BOLD=1;this.FONT_ITALIC=2;this.is2DSpectrum=!1;this.selectedIntegral=this.selectedMeasurement=null;this.lastXMax=NaN;this.lastSpecClicked=
-1;this.inPlotMove=!1;this.xPixelMovedTo2=this.xPixelMovedTo=-1;this.xValueMovedTo=this.yValueMovedTo=0;this.haveLeftRightArrows=!1;this.yPixelPlot1=this.yPixelPlot0=this.xPixelPlot0=this.xPixelPlot1=0;this.nextClickForSetPeak=null;this.splitterY=this.splitterX=this.closerY=this.closerX=0;this.mapX=null;K("JSV.common.GraphSet.Highlight")||JSV.common.GraphSet.$GraphSet$Highlight$();this.widgetsAreSet=!0;this.nextClickMode=this.lastIntDragX=0;this.gMain=this.g2d=this.plotColors=this.image2D=this.jsvp=
this.aIntegrationRatios=this.dialogs=null;this.COLOR_GREY=-3;this.COLOR_BLACK=-2;this.COLOR_INTEGRAL=-1;m(this,arguments)},JSV.common,"GraphSet",null,JSV.common.XYScaleConverter);F(c$,function(){this.highlights=new JU.Lst;this.spectra=new JU.Lst;this.graphsTemp=new JU.Lst;this.bsSelected=new JU.BS;this.coordTemp=new JSV.common.Coordinate;this.mapX=new java.util.Hashtable});n(c$,function(a){this.pd=a;this.jsvp=a.jsvp;this.g2d=a.g2d},"JSV.common.PanelData");c(c$,"setSpectrumMovedTo",function(a){return this.iSpectrumMovedTo=
a},"~N");c(c$,"setSpectrumClicked",function(a){this.stackSelected=this.showAllStacked;if(0>a||this.iSpectrumClicked!=a)this.lastClickX=NaN,this.lastPixelX=2147483647;this.iSpectrumClicked=this.setSpectrumSelected(this.setSpectrumMovedTo(a))},"~N");c(c$,"setSpectrumSelected",function(a){var b=a!=this.iSpectrumSelected;this.iSpectrumSelected=a;b&&this.getCurrentView();return this.iSpectrumSelected},"~N");c(c$,"closeDialogsExcept",function(a){if(null!=this.dialogs)for(var b,d=this.dialogs.entrySet().iterator();d.hasNext()&&
((b=d.next())||1);){var c=b.getValue();c.isDialog()&&(a===JSV.common.Annotation.AType.NONE||c.getAType()!==a)&&c.setVisible(!1)}},"JSV.common.Annotation.AType");c(c$,"dispose",function(){this.widgets=this.graphsTemp=this.imageView=this.pendingMeasurement=this.lastAnnotation=this.annotations=this.viewList=this.viewData=this.spectra=null;this.disposeImage();if(null!=this.dialogs)for(var a,b=this.dialogs.entrySet().iterator();b.hasNext()&&((a=b.next())||1);){var d=a.getValue();d.isDialog()&&d.dispose()}this.dialogs=
null});c(c$,"isDrawNoSpectra",function(){return-2147483648==this.iSpectrumSelected});c(c$,"getFixedSelectedSpectrumIndex",function(){return Math.max(this.iSpectrumSelected,0)});c(c$,"getSpectrum",function(){return this.getSpectrumAt(this.getFixedSelectedSpectrumIndex()).getCurrentSubSpectrum()});c(c$,"getSpectrumAt",function(a){return this.spectra.get(a)},"~N");c(c$,"getSpectrumIndex",function(a){for(var b=this.spectra.size();0<=--b;)if(this.spectra.get(b)===a)return b;return-1},"JSV.common.Spectrum");
c(c$,"addSpec",function(a){this.spectra.addLast(a);this.nSpectra++},"JSV.common.Spectrum");c(c$,"splitStack",function(a){a&&this.isSplittable?(this.nSplit=this.nSpectra,this.showAllStacked=!1,this.setSpectrumClicked(this.iSpectrumSelected),this.pd.currentSplitPoint=this.iSpectrumSelected):(this.nSplit=1,this.showAllStacked=this.allowStacking&&!a,this.setSpectrumClicked(this.iSpectrumSelected));this.stackSelected=!1;JSV.common.GraphSet.setFractionalPositions(this.pd,this.pd.graphSets,JSV.common.PanelData.LinkMode.NONE);
this.pd.setTaintedAll()},"~B");c(c$,"setPositionForFrame",function(a){0>a&&(a=0);var b=this.height-50;this.xPixel00=x(this.width*this.fX0);this.xPixel11=x(this.xPixel00+this.width*this.fracX-1);this.xHArrows=this.xPixel00+25;this.xVArrows=this.xPixel11-x(this.right/2);this.xPixel0=this.xPixel00+x(this.left*(1-this.fX0));this.xPixel10=this.xPixel1=this.xPixel11-this.right;this.xPixels0=this.xPixels=this.xPixel1-this.xPixel0+1;this.yPixel000=(0==this.fY0?25:0)+x(this.height*this.fY0);this.yPixel00=
this.yPixel000+x(b*this.fracY*a);this.yPixel11=this.yPixel00+x(b*this.fracY)-1;this.yHArrows=this.yPixel11-12;this.yPixel0=this.yPixel00+x(this.top/2);this.yPixel1=this.yPixel11-x(this.bottom/2);this.yPixels=this.yPixel1-this.yPixel0+1;null!=this.imageView&&this.is2DSpectrum&&(this.setImageWindow(),this.pd.display1D?(this.xPixels=x(Math.floor(0.8*(this.pd.display1D?1*(this.xPixels0-this.imageView.xPixels)/this.xPixels0:1)*this.xPixels0)),this.xPixel1=this.xPixel0+this.xPixels-1):(this.xPixels=0,this.xPixel1=
this.imageView.xPixel0-30))},"~N");c(c$,"hasPoint",function(a,b){return a>=this.xPixel00&&a<=this.xPixel11&&b>=this.yPixel000&&b<=this.yPixel11*this.nSplit},"~N,~N");c(c$,"isInPlotRegion",function(a,b){return a>=this.xPixel0&&a<=this.xPixel1&&b>=this.yPixel0&&b<=this.yPixel1},"~N,~N");c(c$,"getSplitPoint",function(a){return Math.max(0,Math.min(x((a-this.yPixel000)/(this.yPixel11-this.yPixel00)),this.nSplit-1))},"~N");c(c$,"isSplitWidget",function(a,b){return this.isFrameBox(a,b,this.splitterX,this.splitterY)},
"~N,~N");c(c$,"isCloserWidget",function(a,b){return this.isFrameBox(a,b,this.closerX,this.closerY)},"~N,~N");c(c$,"initGraphSet",function(a,b){null==JSV.common.GraphSet.veryLightGrey&&(JSV.common.GraphSet.veryLightGrey=this.g2d.getColor3(200,200,200));this.setPlotColors(JSV.common.ColorParameters.defaultPlotColors);this.xAxisLeftToRight=this.getSpectrumAt(0).shouldDisplayXAxisIncreasing();this.setDrawXAxis();var d=E(this.nSpectra,0),c=E(this.nSpectra,0);this.bsSelected.setBits(0,this.nSpectra);this.allowStackedYScale=
!0;0>=b&&(b=2147483647);this.isSplittable=1<this.nSpectra;this.showAllStacked=(this.allowStacking=this.spectra.get(0).isStackable())&&1<this.nSpectra;for(var f=0;f<this.nSpectra;f++){var h=this.spectra.get(f).getXYCoords().length-1;d[f]=JSV.common.Coordinate.intoRange(a,0,h);c[f]=JSV.common.Coordinate.intoRange(b,0,h);this.allowStackedYScale=(new Boolean(this.allowStackedYScale&(this.spectra.get(f).getYUnits().equals(this.spectra.get(0).getYUnits())&&this.spectra.get(f).getUserYFactor()==this.spectra.get(0).getUserYFactor()))).valueOf()}this.getView(0,
0,0,0,d,c,null,null);this.viewList=new JU.Lst;this.viewList.addLast(this.viewData)},"~N,~N");c(c$,"getView",function(a,b,d,c,f,h,e,j){var l=0==this.graphsTemp.size()?this.spectra:this.graphsTemp,p=this.getSpectrumAt(0).getSubSpectra(),n=null==p||2==p.size()&&p.get(1).isImaginary(),m=!this.getSpectrumAt(0).is1D();n&&d==c?l=this.spectra:d==c&&(this.viewData=new JSV.common.ViewData(p,d,c,this.getSpectrum().isContinuous()),l=null);null!=l&&(this.viewData=new JSV.common.ViewData(l,d,c,f,h,this.getSpectrumAt(0).isContinuous(),
m),a!=b&&this.getScale().setXRange(a,b));null!=e&&(JSV.common.ScaleData.copyScaleFactors(e,this.viewData.getScaleData()),null!=j&&JSV.common.ScaleData.copyYScales(j,this.viewData.getScaleData()),this.getCurrentView())},"~N,~N,~N,~N,~A,~A,~A,~A");c(c$,"isNearby",function(a,b,d,c){var f=a.getXVal(),h=d.toPixelX(f);a=this.toPixelY(a.getYVal());f=b.getXVal();d=d.toPixelX(f);b=this.toPixelY(b.getYVal());return Math.abs(h-d)+Math.abs(a-b)<c},"JSV.common.Coordinate,JSV.common.Coordinate,JSV.common.XYScaleConverter,~N");
c(c$,"setReversePlot",function(a){(this.reversePlot=a)&&this.closeDialogsExcept(JSV.common.Annotation.AType.NONE);this.setDrawXAxis()},"~B");c(c$,"setDrawXAxis",function(){this.drawXAxisLeftToRight=(new Boolean(this.xAxisLeftToRight^this.reversePlot)).valueOf();for(var a=0;a<this.spectra.size();a++)this.spectra.get(a).setExportXAxisDirection(this.drawXAxisLeftToRight)});c(c$,"isInTopBar",function(a,b){return a==this.fixX(a)&&b>this.pin1Dx0.yPixel0-2&&b<this.pin1Dx0.yPixel1},"~N,~N");c(c$,"isInTopBar2D",
function(a,b){return null!=this.imageView&&a==this.imageView.fixX(a)&&b>this.pin2Dx0.yPixel0-2&&b<this.pin2Dx0.yPixel1},"~N,~N");c(c$,"isInRightBar",function(a,b){return b==this.fixY(b)&&a>this.pin1Dy0.xPixel1&&a<this.pin1Dy0.xPixel0+2},"~N,~N");c(c$,"isInRightBar2D",function(a,b){return null!=this.imageView&&b==this.fixY(b)&&a>this.pin2Dy0.xPixel1&&a<this.pin2Dy0.xPixel0+2},"~N,~N");c(c$,"toX0",function(a){return this.viewList.get(0).getScale().toX0(this.fixX(a),this.xPixel0,this.xPixel1,this.drawXAxisLeftToRight)},
"~N");c(c$,"toY0",function(a){return this.viewList.get(0).getScale().toY0(this.fixY(a),this.yPixel0,this.yPixel1)},"~N");e(c$,"toX",function(a){return null!=this.imageView&&this.imageView.isXWithinRange(a)?this.imageView.toX(a):this.getScale().toX(this.fixX(a),this.xPixel1,this.drawXAxisLeftToRight)},"~N");e(c$,"toY",function(a){return this.getScale().toY(a,this.yPixel0)},"~N");c(c$,"toPixelX",function(a){return this.getScale().toPixelX(a,this.xPixel0,this.xPixel1,this.drawXAxisLeftToRight)},"~N");
c(c$,"toPixelY",function(a){return this.getScale().toPixelY(a,this.yPixel1)},"~N");c(c$,"toPixelX0",function(a){return this.viewList.get(0).getScale().toPixelX0(a,this.xPixel0,this.xPixel1,this.drawXAxisLeftToRight)},"~N");c(c$,"toPixelY0",function(a){return this.fixY(this.viewList.get(0).getScale().toPixelY0(a,this.yPixel0,this.yPixel1))},"~N");c(c$,"fixX",function(a){return JSV.common.Coordinate.intoRange(a,this.xPixel0,this.xPixel1)},"~N");c(c$,"fixY",function(a){return JSV.common.Coordinate.intoRange(a,
this.yPixel0,this.yPixel1)},"~N");c(c$,"getXPixel0",function(){return this.xPixel0});c(c$,"getXPixels",function(){return this.xPixels});e(c$,"getYPixels",function(){return this.yPixels});c(c$,"getScale",function(){return this.viewData.getScale()});c(c$,"toPixelYint",function(a){return this.yPixel1-x(Double.isNaN(a)?-2147483648:this.yPixels*a)},"~N");c(c$,"findAnnotation2D",function(a){for(var b=this.annotations.size();0<=--b;){var d=this.annotations.get(b);if(this.isNearby(d,a,this.imageView,10))return d}return null},
"JSV.common.Coordinate");c(c$,"addAnnotation",function(a,b){null==this.annotations&&(this.annotations=new JU.Lst);for(var d=!1,c=this.annotations.size();0<=--c;)if(a.is2D?this.isNearby(this.annotations.get(c),a,this.imageView,10):a.equals(this.annotations.get(c)))d=!0,this.annotations.removeItemAt(c);0<a.text.length&&(!d||!b)&&this.annotations.addLast(a)},"JSV.common.Annotation,~B");c(c$,"setImageWindow",function(){this.imageView.setPixelWidthHeight(x((this.pd.display1D?0.6:1)*this.xPixels0),this.yPixels);
this.imageView.setXY0(this.getSpectrumAt(0),x(Math.floor(this.xPixel10-this.imageView.xPixels)),this.yPixel0)});c(c$,"findNearestMaxMin",function(){if(1<this.nSpectra&&0>this.iSpectrumClicked)return!1;this.xValueMovedTo=this.getSpectrum().findXForPeakNearest(this.xValueMovedTo);this.setXPixelMovedTo(this.xValueMovedTo,1.7976931348623157E308,0,0);return!Double.isNaN(this.xValueMovedTo)});c(c$,"setXPixelMovedTo",function(a,b,d,c){1.7976931348623157E308==a&&1.7976931348623157E308==b?(this.xPixelMovedTo=
d,this.xPixelMovedTo2=c,this.isLinked&&this.sticky2Dcursor&&this.pd.setlinkedXMove(this,this.toX(this.xPixelMovedTo),!1)):(1.7976931348623157E308!=a&&(this.xPixelMovedTo=this.toPixelX(a),this.fixX(this.xPixelMovedTo)!=this.xPixelMovedTo&&(this.xPixelMovedTo=-1),this.xPixelMovedTo2=-1,1E10!=a&&this.setSpectrumClicked(this.getFixedSelectedSpectrumIndex())),1.7976931348623157E308!=b&&(this.xPixelMovedTo2=this.toPixelX(b)))},"~N,~N,~N,~N");c(c$,"processPendingMeasurement",function(a,b,d){if(!this.isInPlotRegion(a,
b)||this.is2dClick(a,b))this.pendingMeasurement=null;else{var c=this.toX(a),f=this.toY(b),h=c;switch(d){case 0:this.pendingMeasurement.setPt2(this.toX(a),this.toY(b));break;case 3:case 2:if(0>this.iSpectrumClicked)break;var e=this.spectra.get(this.iSpectrumClicked);this.setScale(this.iSpectrumClicked);3!=d&&(d=this.findMeasurement(this.selectedSpectrumMeasurements,a,b,1),null!=d?(c=d.getXVal(),f=d.getYVal()):null!=(d=this.findMeasurement(this.selectedSpectrumMeasurements,a,b,2))?(c=d.getXVal2(),f=
d.getYVal2()):c=this.getNearestPeak(e,c,f));this.pendingMeasurement=(new JSV.common.Measurement).setM1(c,f,e);this.pendingMeasurement.setPt2(h,f);this.pd.setTaintedAll();this.pd.repaint();break;case 1:case -2:case -3:for(h=null!=this.pendingMeasurement&&this.isVisible(this.getDialog(JSV.common.Annotation.AType.Measurements,-1));h;){this.setScale(this.getSpectrumIndex(this.pendingMeasurement.spec));if(3!=d){if(!this.findNearestMaxMin()){h=!1;break}a=this.xPixelMovedTo}c=this.toX(a);f=this.toY(b);this.pendingMeasurement.setPt2(c,
f);if(0==this.pendingMeasurement.text.length){h=!1;break}this.setMeasurement(this.pendingMeasurement);if(1!=d){h=!1;break}this.setSpectrumClicked(this.getSpectrumIndex(this.pendingMeasurement.spec));this.pendingMeasurement=(new JSV.common.Measurement).setM1(c,f,this.pendingMeasurement.spec);break}h||(this.pendingMeasurement=null);this.pd.setTaintedAll();this.pd.repaint();break;case 5:this.findNearestMaxMin()?(a=this.getFixedSelectedSpectrumIndex(),Double.isNaN(this.lastXMax)||this.lastSpecClicked!=
a||null==this.pendingMeasurement?(this.lastXMax=this.xValueMovedTo,this.lastSpecClicked=a,this.pendingMeasurement=(new JSV.common.Measurement).setM1(this.xValueMovedTo,this.yValueMovedTo,this.spectra.get(a))):(this.pendingMeasurement.setPt2(this.xValueMovedTo,this.yValueMovedTo),0<this.pendingMeasurement.text.length&&this.setMeasurement(this.pendingMeasurement),this.pendingMeasurement=null,this.lastXMax=NaN)):this.lastXMax=NaN}}},"~N,~N,~N");c(c$,"checkIntegralNormalizationClick",function(a,b){if(null==
this.selectedSpectrumIntegrals)return!1;var d=this.findMeasurement(this.selectedSpectrumIntegrals,a,b,-5);if(null==d)return!1;this.selectedIntegral=d;this.pd.normalizeIntegral();this.updateDialog(JSV.common.Annotation.AType.Integration,-1);this.setSpectrumClicked(this.getSpectrumIndex(d.spec));return!0},"~N,~N");c(c$,"getNearestPeak",function(a,b,d){var c=JSV.common.Coordinate.getNearestXWithYAbove(a.getXYCoords(),b,d,a.isInverted(),!1);a=JSV.common.Coordinate.getNearestXWithYAbove(a.getXYCoords(),
b,d,a.isInverted(),!0);return Double.isNaN(c)?a:Double.isNaN(a)?c:Math.abs(c-b)<Math.abs(a-b)?c:a},"JSV.common.Spectrum,~N,~N");c(c$,"findMeasurement",function(a,b,d,c){if(null==a||0==a.size())return null;if(0==c){var f=this.findMeasurement(a,b,d,-1);return null!=f||v(a.get(0),JSV.common.Integral)?f:this.findMeasurement(a,b,d,-2)}for(var h=a.size();0<=--h;){var f=a.get(h),e,j,l,p;v(f,JSV.common.Integral)?(e=j=this.toPixelX(f.getXVal2()),l=this.toPixelYint(f.getYVal()),p=this.toPixelYint(f.getYVal2())):
(e=this.toPixelX(f.getXVal()),j=this.toPixelX(f.getXVal2()),l=p=-2==c?this.yPixel1-2:this.toPixelY(f.getYVal()));switch(c){case 1:if(4>Math.abs(b-e)+Math.abs(d-l))return f;break;case 2:if(4>Math.abs(b-j)+Math.abs(d-p))return f;break;case -5:l=p=x((l+p)/2),j=e+20;default:case -1:case -2:if(JSV.common.GraphSet.isOnLine(b,d,e,l,j,p))return f}}return null},"JSV.common.MeasurementData,~N,~N,~N");c(c$,"setMeasurement",function(a){var b=this.getSpectrumIndex(a.spec),d=this.getDialog(JSV.common.Annotation.AType.Measurements,
b);null==d&&this.addDialog(b,JSV.common.Annotation.AType.Measurements,d=new JSV.common.MeasurementData(JSV.common.Annotation.AType.Measurements,a.spec));d.getData().addLast(a.copyM());this.updateDialog(JSV.common.Annotation.AType.Measurements,-1)},"JSV.common.Measurement");c(c$,"checkArrowUpDownClick",function(a,b){var d=!1,c=this.isArrowClick(a,b,3)?JSV.common.GraphSet.RT2:this.isArrowClick(a,b,4)?1/JSV.common.GraphSet.RT2:0;if(0!=c){1<this.nSplit&&this.setSpectrumSelected(this.iSpectrumMovedTo);
if((1==this.nSpectra||0<=this.iSpectrumSelected)&&this.spectra.get(this.getFixedSelectedSpectrumIndex()).isTransmittance())c=1/c;this.viewData.scaleSpectrum(null==this.imageView?this.iSpectrumSelected:-2,c);d=!0}else this.isArrowClick(a,b,-1)&&(this.resetViewCompletely(),d=!0);d&&(null!=this.imageView&&(this.update2dImage(!1),this.resetPinsFromView()),this.pd.setTaintedAll());return d},"~N,~N");c(c$,"resetViewCompletely",function(){this.clearViews();this.showAllStacked&&!this.stackSelected&&this.closeDialogsExcept(JSV.common.Annotation.AType.NONE);
this.viewData.resetScaleFactors();this.updateDialogs()});c(c$,"checkArrowLeftRightClick",function(a,b){if(this.haveLeftRightArrows){var d=this.isArrowClick(a,b,1)?-1:this.isArrowClick(a,b,2)?1:0;if(0!=d)return d=this.iSpectrumSelected+d,0>d&&(d=this.nSpectra-1),this.setSpectrumClicked(d%this.nSpectra),!0;if(this.isArrowClick(a,b,0)){if(this.showAllStacked)return this.showAllStacked=!1,this.setSpectrumClicked(this.getFixedSelectedSpectrumIndex()),!0;this.showAllStacked=this.allowStacking;this.setSpectrumSelected(-1);
this.stackSelected=!1}}return!1},"~N,~N");c(c$,"isArrowClick",function(a,b,d){switch(d){case 3:case 4:case -1:return d=x((this.yPixel00+this.yPixel11)/2)+15*(3==d?-1:4==d?1:0),10>Math.abs(this.xVArrows-a)&&10>Math.abs(d-b);case 1:case 2:case 0:return d=this.xHArrows+15*(1==d?-1:2==d?1:0),10>Math.abs(d-a)&&10>Math.abs(this.yHArrows-b)}return!1},"~N,~N,~N");c(c$,"setWidgetValueByUser",function(a){var b;b=a===this.cur2Dy?""+this.imageView.toSubspectrumIndex(a.yPixel0):a===this.pin1Dx01?""+Math.min(this.pin1Dx0.getXVal(),
this.pin1Dx1.getXVal())+" - "+Math.max(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal()):a===this.pin1Dy01?""+Math.min(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal())+" - "+Math.max(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal()):a===this.pin2Dx01?""+Math.min(this.pin2Dx0.getXVal(),this.pin2Dx1.getXVal())+" - "+Math.max(this.pin2Dx0.getXVal(),this.pin2Dx1.getXVal()):a===this.pin2Dy01?""+x(Math.min(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal()))+" - "+x(Math.max(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal())):
""+a.getValue();b=this.pd.getInput("New value?","Set Slider",b);if(null!=b){b=b.trim();try{if(a===this.pin1Dx01||a===this.pin1Dy01||a===this.pin2Dx01||a===this.pin2Dy01){var d=b.indexOf("-",1);if(!(0>d)){var c=Double.$valueOf(b.substring(0,d)).doubleValue(),f=Double.$valueOf(b.substring(d+1)).doubleValue();a===this.pin1Dx01?this.doZoom(c,this.pin1Dy0.getYVal(),f,this.pin1Dy1.getYVal(),!0,!1,!1,!0,!0):a===this.pin1Dy01?this.doZoom(this.pin1Dx0.getXVal(),c,this.pin1Dx1.getXVal(),f,null==this.imageView,
null==this.imageView,!1,!1,!0):a===this.pin2Dx01?(this.imageView.setView0(this.imageView.toPixelX0(c),this.pin2Dy0.yPixel0,this.imageView.toPixelX0(f),this.pin2Dy1.yPixel0),this.doZoom(c,this.pin1Dy0.getYVal(),f,this.pin1Dy1.getYVal(),!1,!1,!1,!0,!0)):a===this.pin2Dy01&&(this.imageView.setView0(this.pin2Dx0.xPixel0,this.imageView.toPixelY0(c),this.pin2Dx1.xPixel0,this.imageView.toPixelY0(f)),this.doZoom(this.imageView.toX(this.imageView.xPixel0),this.getScale().minY,this.imageView.toX(this.imageView.xPixel0+
this.imageView.xPixels-1),this.getScale().maxY,!1,!1,!1,!1,!0))}}else{var h=Double.$valueOf(b).doubleValue();a.isXtype?(f=a===this.pin1Dx0||a===this.cur2Dx0||a===this.pin2Dx0?this.pin1Dx1.getXVal():this.pin1Dx0.getXVal(),this.doZoom(h,0,f,0,!a.is2D,!1,!1,!0,!0)):a===this.cur2Dy?this.setCurrentSubSpectrum(x(h)):a===this.pin2Dy0||a===this.pin2Dy1?(f=a===this.pin2Dy0?this.pin2Dy1.yPixel0:this.pin2Dy0.yPixel0,this.imageView.setView0(this.pin2Dx0.xPixel0,this.imageView.subIndexToPixelY(x(h)),this.pin2Dx1.xPixel0,
f)):(f=a===this.pin1Dy0?this.pin1Dy1.getYVal():this.pin1Dy0.getYVal(),this.doZoom(this.pin1Dx0.getXVal(),h,this.pin1Dx1.getXVal(),f,null==this.imageView,null==this.imageView,!1,!1,!0))}}catch(e){if(!y(e,Exception))throw e;}}},"JSV.common.PlotWidget");c(c$,"removeAllHighlights",function(a){if(null==a)this.highlights.clear();else for(var b=this.highlights.size();0<=--b;)this.highlights.get(b).spectrum===a&&this.highlights.removeItemAt(b)},"JSV.common.Spectrum");c(c$,"setCoordClicked",function(a,b,d){0==
d&&(this.nextClickForSetPeak=null);if(Double.isNaN(b))return this.pd.coordClicked=null,this.pd.coordsClicked=null;this.pd.coordClicked=(new JSV.common.Coordinate).set(this.lastClickX=b,d);this.pd.coordsClicked=this.getSpectrum().getXYCoords();this.pd.xPixelClicked=this.lastPixelX=a;return this.pd.coordClicked},"~N,~N,~N");c(c$,"setWidgets",function(a,b,d){if(a||null==this.pin1Dx0)null==this.zoomBox1D?this.newPins():this.resetPinPositions();this.setDerivedPins(b);this.setPinSliderPositions(d)},"~B,~N,~B");
c(c$,"newPins",function(){this.zoomBox1D=new JSV.common.PlotWidget("zoomBox1D");this.pin1Dx0=new JSV.common.PlotWidget("pin1Dx0");this.pin1Dx1=new JSV.common.PlotWidget("pin1Dx1");this.pin1Dy0=new JSV.common.PlotWidget("pin1Dy0");this.pin1Dy1=new JSV.common.PlotWidget("pin1Dy1");this.pin1Dx01=new JSV.common.PlotWidget("pin1Dx01");this.pin1Dy01=new JSV.common.PlotWidget("pin1Dy01");this.cur1D2x1=new JSV.common.PlotWidget("cur1D2x1");this.cur1D2x1.color=JSV.common.ScriptToken.PEAKTABCOLOR;this.cur1D2x2=
new JSV.common.PlotWidget("cur1D2x2");this.cur1D2x2.color=JSV.common.ScriptToken.PEAKTABCOLOR;if(null!=this.imageView){this.zoomBox2D=new JSV.common.PlotWidget("zoomBox2D");this.pin2Dx0=new JSV.common.PlotWidget("pin2Dx0");this.pin2Dx1=new JSV.common.PlotWidget("pin2Dx1");this.pin2Dy0=new JSV.common.PlotWidget("pin2Dy0");this.pin2Dy1=new JSV.common.PlotWidget("pin2Dy1");this.pin2Dx01=new JSV.common.PlotWidget("pin2Dx01");this.pin2Dy01=new JSV.common.PlotWidget("pin2Dy01");this.cur2Dx0=new JSV.common.PlotWidget("cur2Dx0");
this.cur2Dx1=new JSV.common.PlotWidget("cur2Dx1");this.cur2Dy=new JSV.common.PlotWidget("cur2Dy");this.pin2Dy0.setY(0,this.imageView.toPixelY0(0));var a=this.getSpectrumAt(0).getSubSpectra().size();this.pin2Dy1.setY(a,this.imageView.toPixelY0(a))}this.setWidgetX(this.pin1Dx0,this.getScale().minX);this.setWidgetX(this.pin1Dx1,this.getScale().maxX);this.setWidgetY(this.pin1Dy0,this.getScale().minY);this.setWidgetY(this.pin1Dy1,this.getScale().maxY);this.widgets=w(-1,[this.zoomBox1D,this.zoomBox2D,this.pin1Dx0,
this.pin1Dx01,this.pin1Dx1,this.pin1Dy0,this.pin1Dy01,this.pin1Dy1,this.pin2Dx0,this.pin2Dx01,this.pin2Dx1,this.pin2Dy0,this.pin2Dy01,this.pin2Dy1,this.cur2Dx0,this.cur2Dx1,this.cur2Dy,this.cur1D2x1,this.cur1D2x2])});c(c$,"setWidgetX",function(a,b){a.setX(b,this.toPixelX0(b))},"JSV.common.PlotWidget,~N");c(c$,"setWidgetY",function(a,b){a.setY(b,this.toPixelY0(b))},"JSV.common.PlotWidget,~N");c(c$,"resetPinsFromView",function(){null!=this.pin1Dx0&&(this.setWidgetX(this.pin1Dx0,this.getScale().minXOnScale),
this.setWidgetX(this.pin1Dx1,this.getScale().maxXOnScale),this.setWidgetY(this.pin1Dy0,this.getScale().minYOnScale),this.setWidgetY(this.pin1Dy1,this.getScale().maxYOnScale))});c(c$,"resetPinPositions",function(){this.resetX(this.pin1Dx0);this.resetY(this.pin1Dy0);this.resetY(this.pin1Dy1);null==this.imageView?(null!=this.gs2dLinkedX&&this.resetX(this.cur1D2x1),null!=this.gs2dLinkedY&&this.resetX(this.cur1D2x2)):(this.pin2Dy0.setY(this.pin2Dy0.getYVal(),this.imageView.toPixelY0(this.pin2Dy0.getYVal())),
this.pin2Dy1.setY(this.pin2Dy1.getYVal(),this.imageView.toPixelY0(this.pin2Dy1.getYVal())))});c(c$,"resetX",function(a){this.setWidgetX(a,a.getXVal())},"JSV.common.PlotWidget");c(c$,"resetY",function(a){this.setWidgetY(a,a.getYVal())},"JSV.common.PlotWidget");c(c$,"setPinSliderPositions",function(a){this.pin1Dx0.yPixel0=this.pin1Dx1.yPixel0=this.pin1Dx01.yPixel0=this.yPixel0-5;this.pin1Dx0.yPixel1=this.pin1Dx1.yPixel1=this.pin1Dx01.yPixel1=this.yPixel0;this.cur1D2x1.yPixel1=this.cur1D2x2.yPixel1=
this.yPixel0-5;this.cur1D2x1.yPixel0=this.cur1D2x2.yPixel0=this.yPixel1+6;null==this.imageView?(this.pin1Dy0.xPixel0=this.pin1Dy1.xPixel0=this.pin1Dy01.xPixel0=this.xPixel1+5,this.pin1Dy0.xPixel1=this.pin1Dy1.xPixel1=this.pin1Dy01.xPixel1=this.xPixel1):(this.pin1Dy0.xPixel0=this.pin1Dy1.xPixel0=this.pin1Dy01.xPixel0=this.imageView.xPixel1+15,this.pin1Dy0.xPixel1=this.pin1Dy1.xPixel1=this.pin1Dy01.xPixel1=this.imageView.xPixel1+10,this.pin2Dx0.yPixel0=this.pin2Dx1.yPixel0=this.pin2Dx01.yPixel0=this.yPixel0-
5,this.pin2Dx0.yPixel1=this.pin2Dx1.yPixel1=this.pin2Dx01.yPixel1=this.yPixel0,this.pin2Dy0.xPixel0=this.pin2Dy1.xPixel0=this.pin2Dy01.xPixel0=this.imageView.xPixel1+5,this.pin2Dy0.xPixel1=this.pin2Dy1.xPixel1=this.pin2Dy01.xPixel1=this.imageView.xPixel1,this.cur2Dx0.yPixel0=this.cur2Dx1.yPixel0=this.yPixel1+6,this.cur2Dx0.yPixel1=this.cur2Dx1.yPixel1=this.yPixel0-5,this.cur2Dx0.yPixel0=this.cur2Dx1.yPixel0=this.yPixel1+6,this.cur2Dx1.yPixel1=this.cur2Dx1.yPixel1=this.yPixel0-5,this.cur2Dy.xPixel0=
a?x((this.xPixel1+this.imageView.xPixel0)/2):this.imageView.xPixel0-6,this.cur2Dy.xPixel1=this.imageView.xPixel1+5)},"~B");c(c$,"setDerivedPins",function(a){this.widgetsAreSet=!0;null!=this.gs2dLinkedX&&this.cur1D2x1.setX(this.cur1D2x1.getXVal(),this.toPixelX(this.cur1D2x1.getXVal()));null!=this.gs2dLinkedY&&this.cur1D2x2.setX(this.cur1D2x2.getXVal(),this.toPixelX(this.cur1D2x2.getXVal()));this.pin1Dx01.setX(0,x((this.pin1Dx0.xPixel0+this.pin1Dx1.xPixel0)/2));this.pin1Dy01.setY(0,x((this.pin1Dy0.yPixel0+
this.pin1Dy1.yPixel0)/2));this.pin1Dx01.setEnabled(Math.min(this.pin1Dx0.xPixel0,this.pin1Dx1.xPixel0)>this.xPixel0||Math.max(this.pin1Dx0.xPixel0,this.pin1Dx1.xPixel0)<this.xPixel1);this.pin1Dy01.setEnabled(Math.min(this.pin1Dy0.yPixel0,this.pin1Dy1.yPixel0)>Math.min(this.toPixelY(this.getScale().minY),this.toPixelY(this.getScale().maxY))||Math.max(this.pin1Dy0.yPixel0,this.pin1Dy1.yPixel0)<Math.max(this.toPixelY(this.getScale().minY),this.toPixelY(this.getScale().maxY)));if(null!=this.imageView){var b=
this.pin1Dx0.getXVal();this.cur2Dx0.setX(b,this.imageView.toPixelX(b));b=this.pin1Dx1.getXVal();this.cur2Dx1.setX(b,this.imageView.toPixelX(b));b=this.imageView.toX(this.imageView.xPixel0);this.pin2Dx0.setX(b,this.imageView.toPixelX0(b));b=this.imageView.toX(this.imageView.xPixel1);this.pin2Dx1.setX(b,this.imageView.toPixelX0(b));this.pin2Dx01.setX(0,x((this.pin2Dx0.xPixel0+this.pin2Dx1.xPixel0)/2));b=this.imageView.imageHeight-1-this.imageView.yView1;this.pin2Dy0.setY(b,this.imageView.toPixelY0(b));
b=this.imageView.imageHeight-1-this.imageView.yView2;this.pin2Dy1.setY(b,this.imageView.toPixelY0(b));this.pin2Dy01.setY(0,x((this.pin2Dy0.yPixel0+this.pin2Dy1.yPixel0)/2));this.cur2Dy.yPixel0=this.cur2Dy.yPixel1=this.imageView.subIndexToPixelY(a);this.pin2Dx01.setEnabled(Math.min(this.pin2Dx0.xPixel0,this.pin2Dx1.xPixel0)!=this.imageView.xPixel0||Math.max(this.pin2Dx0.xPixel0,this.pin2Dx1.xPixel1)!=this.imageView.xPixel1);this.pin2Dy01.setEnabled(Math.min(this.pin2Dy0.yPixel0,this.pin2Dy1.yPixel0)!=
this.yPixel0||Math.max(this.pin2Dy0.yPixel0,this.pin2Dy1.yPixel1)!=this.yPixel1)}},"~N");c(c$,"doZoom",function(a,b,d,c,f,h,e,j,l){a==d?(a=this.getScale().minXOnScale,d=this.getScale().maxXOnScale):this.isLinked&&j&&this.pd.doZoomLinked(this,a,d,l,e,f);a>d&&(j=a,a=d,d=j);b>c&&(j=b,b=c,c=j);j=!f&&null!=this.imageView&&(this.imageView.minZ!=b||this.imageView.maxZ!=c);if(this.zoomEnabled||j){if(e){if(!this.getScale().isInRangeX(a)&&!this.getScale().isInRangeX(d))return;this.getScale().isInRangeX(a)?
this.getScale().isInRangeX(d)||(d=this.getScale().maxX):a=this.getScale().minX}this.pd.setTaintedAll();e=this.viewData.getScaleData();var p=E(this.nSpectra,0),n=E(this.nSpectra,0);this.graphsTemp.clear();var m=this.getSpectrumAt(0).getSubSpectra(),m=null==m||2==m.size();if(this.getSpectrumAt(0).is1D()&&!m){if(this.graphsTemp.addLast(this.getSpectrum()),!JSV.common.ScaleData.setDataPointIndices(this.graphsTemp,a,d,3,p,n))return}else if(!JSV.common.ScaleData.setDataPointIndices(this.spectra,a,d,3,p,
n))return;if(m=b==c)f=!j&&f?f=this.getScale().spectrumScaleFactor:1,1E-4>Math.abs(f-1)&&(b=this.getScale().minYOnScale,c=this.getScale().maxYOnScale);f=null;if(m||h)this.getCurrentView(),f=this.viewData.getNewScales(this.iSpectrumSelected,m,b,c);this.getView(a,d,b,c,p,n,e,f);this.setXPixelMovedTo(1E10,1.7976931348623157E308,0,0);this.setWidgetX(this.pin1Dx0,a);this.setWidgetX(this.pin1Dx1,d);this.setWidgetY(this.pin1Dy0,b);this.setWidgetY(this.pin1Dy1,c);null==this.imageView?this.updateDialogs():
(a=this.getSpectrumAt(0).getSubIndex(),d=this.imageView.fixSubIndex(a),d!=a&&this.setCurrentSubSpectrum(d),j&&this.update2dImage(!1));l&&this.addCurrentZoom()}},"~N,~N,~N,~N,~B,~B,~B,~B,~B");c(c$,"updateDialogs",function(){this.updateDialog(JSV.common.Annotation.AType.PeakList,-1);this.updateDialog(JSV.common.Annotation.AType.Measurements,-1)});c(c$,"setCurrentSubSpectrum",function(a){var b=this.getSpectrumAt(0);a=b.setCurrentSubSpectrum(a);b.isForcedSubset()&&this.viewData.setXRangeForSubSpectrum(this.getSpectrum().getXYCoords());
this.pd.notifySubSpectrumChange(a,this.getSpectrum())},"~N");c(c$,"addCurrentZoom",function(){if(this.viewList.size()>this.currentZoomIndex+1)for(var a=this.viewList.size()-1;a>this.currentZoomIndex;a--)this.viewList.removeItemAt(a);this.viewList.addLast(this.viewData);this.currentZoomIndex++});c(c$,"setZoomTo",function(a){this.currentZoomIndex=a;this.viewData=this.viewList.get(a);this.resetPinsFromView()},"~N");c(c$,"clearViews",function(){this.isLinked&&this.pd.clearLinkViews(this);this.setZoom(0,
0,0,0);for(var a=this.viewList.size();1<=--a;)this.viewList.removeItemAt(a)});c(c$,"drawAll",function(a,b,d,c,f,h,e){this.g2d=this.pd.g2d;this.gMain=a;var j=this.getSpectrumAt(0),l=j.getSubIndex();this.is2DSpectrum=!j.is1D()&&(this.isLinked||this.pd.getBoolean(JSV.common.ScriptToken.DISPLAY2D))&&(null!=this.imageView||this.get2DImage(j));null!=this.imageView&&h&&(this.pd.isPrinting&&this.g2d!==this.pd.g2d0&&this.g2d.newGrayScaleImage(a,this.image2D,this.imageView.imageWidth,this.imageView.imageHeight,
this.imageView.getBuffer()),this.is2DSpectrum&&this.setPositionForFrame(c),this.draw2DImage());var p=this.stackSelected||!this.showAllStacked?this.iSpectrumSelected:-1,n=!this.showAllStacked||1==this.nSpectra||0<=p,j=null==this.imageView||this.pd.display1D,m=0<=p?1:0,q=this.getFixedSelectedSpectrumIndex();if(j&&h&&(this.fillBox(a,this.xPixel0,this.yPixel0,this.xPixel1,this.yPixel1,JSV.common.ScriptToken.PLOTAREACOLOR),0>p)){n=!0;for(p=0;p<this.nSpectra;p++)this.doPlot(p,c)&&0!=m++&&(n=(new Boolean(n&
this.viewData.areYScalesSame(p-1,p))).valueOf())}var k=1==this.nSpectra?0:!this.showAllStacked?this.iSpectrumMovedTo:this.iSpectrumSelected;d=d===a?b:d;if(h){var p=this.pd.getCurrentGraphSet()===this&&!this.isLinked&&(!this.isSplittable||1==this.nSplit||this.pd.currentSplitPoint==c),s=this.zoomEnabled&&!this.isDrawNoSpectra()&&this.pd.isCurrentGraphSet(this)&&this.spectra.get(0).isScalable()&&(p||1==this.nSpectra)&&(1==this.nSplit||this.pd.currentSplitPoint==this.iSpectrumMovedTo);this.drawFrame(a,
k,p,this.isSplittable,s)}if(this.pd.isCurrentGraphSet(this)&&c==this.pd.currentSplitPoint&&(2>m||0<=this.iSpectrumSelected))this.$haveSelectedSpectrum=!0;this.haveSingleYScale=this.showAllStacked&&1<this.nSpectra?this.allowStackedYScale&&n:!0;if(j){n=G(this.yPixels*(this.yStackOffsetPercent/100));this.haveLeftRightArrows=!1;for(s=p=0;p<this.nSpectra;p++)if(this.doPlot(p,c)){var k=this.stackSelected&&0<=this.iSpectrumSelected&&this.iSpectrumSelected!=p,t=!this.reversePlot&&this.getShowAnnotation(JSV.common.Annotation.AType.Integration,
p)&&(!this.showAllStacked||this.iSpectrumSelected==p)?this.getDialog(JSV.common.Annotation.AType.Integration,p).getData():null;this.setScale(p);var u=this.spectra.get(p);1<this.nSplit&&(q=p);var v=!k&&(1==this.nSplit||this.showAllStacked||this.iSpectrumSelected==c),w=v&&this.$haveSelectedSpectrum&&p==q;v&&(this.resetPinsFromView(),this.drawWidgets(b,d,l,f,j,w,!1));this.haveSingleYScale&&(p==q&&h)&&(this.drawGrid(a),this.pd.isPrinting&&1<this.nSplit&&this.drawSpectrumSource(a,p));v&&this.drawWidgets(b,
d,l,!1,j,w,!0);!this.isDrawNoSpectra()&&((1==this.nSpectra||0<=this.iSpectrumSelected)&&(this.haveSingleYScale&&p==q||this.showAllStacked&&this.stackSelected&&p==this.iSpectrumSelected))&&this.drawHighlightsAndPeakTabs(b,d,p);if(h){if((1==m&&0>this.iSpectrumSelected||this.iSpectrumSelected==p&&this.pd.isCurrentGraphSet(this))&&this.pd.titleOn&&!this.pd.titleDrawn)this.pd.drawTitle(a,this.height,this.width,this.pd.getDrawTitle(this.pd.isPrinting)),this.pd.titleDrawn=!0;this.haveSingleYScale&&p==q&&
(this.pd.getBoolean(JSV.common.ScriptToken.YSCALEON)&&this.drawYScale(a,this),this.pd.getBoolean(JSV.common.ScriptToken.YUNITSON)&&this.drawYUnits(a))}var v=u.isContinuous(),w=(1<this.nSplit?p==this.iSpectrumMovedTo:this.isLinked||p==q)&&!this.pd.isPrinting&&v,x=!k&&null!=this.pendingIntegral&&u===this.pendingIntegral.spec;if(h||x)this.drawPlot(x&&!h?b:a,p,u,v,s,k,null,w,x,e);this.drawIntegration(b,p,s,k,t,v,w);this.drawMeasurements(b,p);null!=this.pendingMeasurement&&this.pendingMeasurement.spec===
u&&this.drawMeasurement(b,this.pendingMeasurement);w&&0<=this.xPixelMovedTo&&this.drawSpectrumPointer(b,u,s,t);1<this.nSpectra&&(1==this.nSplit&&this.pd.isCurrentGraphSet(this)&&h)&&(this.haveLeftRightArrows=!0,this.pd.isPrinting||(this.setScale(0),k=this.iSpectrumSelected,2!=this.nSpectra&&(this.setPlotColor(a,(k+this.nSpectra-1)%this.nSpectra),this.fillArrow(a,1,this.yHArrows,this.xHArrows-9,!0),this.setCurrentBoxColor(a),this.fillArrow(a,1,this.yHArrows,this.xHArrows-9,!1)),0<=k&&(this.setPlotColor(a,
k),this.fillCircle(a,this.xHArrows,this.yHArrows,!0)),this.setCurrentBoxColor(a),this.fillCircle(a,this.xHArrows,this.yHArrows,!1),this.setPlotColor(a,(k+1)%this.nSpectra),this.fillArrow(a,2,this.yHArrows,this.xHArrows+9,!0),this.setCurrentBoxColor(a),this.fillArrow(a,2,this.yHArrows,this.xHArrows+9,!1)));s-=n}h&&(this.pd.getBoolean(JSV.common.ScriptToken.XSCALEON)&&this.drawXScale(a,this),this.pd.getBoolean(JSV.common.ScriptToken.XUNITSON)&&this.drawXUnits(a))}else h&&(this.pd.getBoolean(JSV.common.ScriptToken.XSCALEON)&&
this.drawXScale(a,this.imageView),this.pd.getBoolean(JSV.common.ScriptToken.YSCALEON)&&this.drawYScale(a,this.imageView),0<=l&&this.draw2DUnits(a)),this.drawWidgets(b,d,l,f,j,!0,!1),this.drawWidgets(b,d,l,f,j,!0,!0);null!=this.annotations&&this.drawAnnotations(b,this.annotations,null)},"~O,~O,~O,~N,~B,~B,~B");c(c$,"drawSpectrumSource",function(a,b){this.pd.printFilePath(a,this.pd.thisWidth-this.pd.right,this.yPixel0,this.spectra.get(b).getFilePath())},"~O,~N");c(c$,"doPlot",function(a,b){var d=this.stackSelected&&
0<=this.iSpectrumSelected&&this.iSpectrumSelected!=a,c=this.showAllStacked||-1==this.iSpectrumSelected||this.iSpectrumSelected==a;return 1<this.nSplit?a==b:c&&(!this.pd.isPrinting||!d)},"~N,~N");c(c$,"drawSpectrumPointer",function(a,b,d,c){this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR);var f=this.pd.integralShiftMode;null!=c&&((!this.pd.ctrlPressed||this.pd.isIntegralDrag)&&!this.isOnSpectrum(this.pd.mouseX,this.pd.mouseY,-1)?c=null:0==f&&(f=this.getShiftMode(this.pd.mouseX,this.pd.mouseY),
0==f&&(f=2147483647)));var h=this.yValueMovedTo;this.yValueMovedTo=null==c?b.getYValueAt(this.xValueMovedTo):c.getPercentYValueAt(this.xValueMovedTo);this.setCoordStr(this.xValueMovedTo,this.yValueMovedTo);if(0!=f&&(this.setPlotColor(a,2147483647==f?-1:0),(0>f||2147483647==f)&&this.drawHandle(a,this.xPixelPlot1,this.yPixelPlot0,3,!1),0<f&&this.drawHandle(a,this.xPixelPlot0,this.yPixelPlot1,3,!1),2147483647!=f))return;null!=c&&this.g2d.setStrokeBold(a,!0);Double.isNaN(h)||null!=this.pendingMeasurement?
(this.g2d.drawLine(a,this.xPixelMovedTo,this.yPixel0,this.xPixelMovedTo,this.yPixel1),0<=this.xPixelMovedTo2&&this.g2d.drawLine(a,this.xPixelMovedTo2,this.yPixel0,this.xPixelMovedTo2,this.yPixel1),this.yValueMovedTo=NaN):(b=null==c?d+this.toPixelY(this.yValueMovedTo):this.toPixelYint(this.yValueMovedTo/100),b==this.fixY(b)&&this.g2d.drawLine(a,this.xPixelMovedTo,b-10,this.xPixelMovedTo,b+10));null!=c&&this.g2d.setStrokeBold(a,!1)},"~O,JSV.common.Spectrum,~N,JSV.common.IntegralData");c(c$,"setScale",
function(a){this.viewData.setScale(a,this.xPixels,this.yPixels,this.spectra.get(a).isInverted())},"~N");c(c$,"draw2DUnits",function(a){var b=this.getSpectrumAt(0).nucleusX,d=this.getSpectrumAt(0).nucleusY;this.setColorFromToken(a,JSV.common.ScriptToken.PLOTCOLOR);this.drawUnits(a,b,this.imageView.xPixel1+5*this.pd.scalingFactor,this.yPixel1,1,1);this.drawUnits(a,d,this.imageView.xPixel0-5*this.pd.scalingFactor,this.yPixel0,1,0)},"~O");c(c$,"drawPeakTabs",function(a,b,d){var c=1==this.nSpectra||0<=
this.iSpectrumSelected?d.getPeakList():null;if(null!=c&&0<c.size()){null!=this.piMouseOver&&this.piMouseOver.spectrum===d&&this.pd.isMouseUp()?(this.g2d.setGraphicsColor(b,this.g2d.getColor4(240,240,240,140)),this.drawPeak(b,this.piMouseOver,0),d.setHighlightedPeak(this.piMouseOver)):d.setHighlightedPeak(null);this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR);for(b=c.size();0<=--b;){var f=c.get(b);this.drawPeak(a,f,f===d.getSelectedPeak()?14:7)}}},"~O,~O,JSV.common.Spectrum");c(c$,"drawPeak",
function(a,b,d){if(!this.pd.isPrinting){var c=b.getXMin(),f=b.getXMax();c!=f&&this.drawBar(a,b,c,f,null,d)}},"~O,JSV.common.PeakInfo,~N");c(c$,"drawWidgets",function(a,b,d,c,f,h,e){this.setWidgets(c,d,f);if(!this.pd.isPrinting||!(null==this.imageView?!this.cur1D2Locked:this.sticky2Dcursor)){!this.pd.isPrinting&&!e&&(f?(this.fillBox(a,this.xPixel0,this.pin1Dx0.yPixel1,this.xPixel1,this.pin1Dx1.yPixel1+2,JSV.common.ScriptToken.GRIDCOLOR),this.fillBox(a,this.pin1Dx0.xPixel0,this.pin1Dx0.yPixel1,this.pin1Dx1.xPixel0,
this.pin1Dx1.yPixel1+2,JSV.common.ScriptToken.PLOTCOLOR)):(this.fillBox(a,this.imageView.xPixel0,this.pin2Dx0.yPixel1,this.imageView.xPixel1,this.pin2Dx0.yPixel1+2,JSV.common.ScriptToken.GRIDCOLOR),this.fillBox(a,this.pin2Dx0.xPixel0,this.pin2Dx0.yPixel1,this.pin2Dx1.xPixel0,this.pin2Dx1.yPixel1+2,JSV.common.ScriptToken.PLOTCOLOR),this.fillBox(a,this.pin2Dy0.xPixel1,this.yPixel1,this.pin2Dy1.xPixel1+2,this.yPixel0,JSV.common.ScriptToken.GRIDCOLOR),this.fillBox(a,this.pin2Dy0.xPixel1,this.pin2Dy0.yPixel1,
this.pin2Dy1.xPixel1+2,this.pin2Dy1.yPixel0,JSV.common.ScriptToken.PLOTCOLOR)),this.fillBox(a,this.pin1Dy0.xPixel1,this.yPixel1,this.pin1Dy1.xPixel1+2,this.yPixel0,JSV.common.ScriptToken.GRIDCOLOR),h&&this.fillBox(a,this.pin1Dy0.xPixel1,this.pin1Dy0.yPixel1,this.pin1Dy1.xPixel1+2,this.pin1Dy1.yPixel0,JSV.common.ScriptToken.PLOTCOLOR));for(d=0;d<this.widgets.length;d++)if(c=this.widgets[d],!(null==c||!c.isPinOrCursor&&!this.zoomEnabled)){var j=c===this.cur1D2x1||c===this.cur1D2x2||c===this.cur2Dx0||
c===this.cur2Dx1||c===this.cur2Dy;if((c.isPin||!c.isPinOrCursor)!=e){if(c.is2D){if(c===this.cur2Dx0&&!f)continue}else{var l=c===this.pin1Dy0||c===this.pin1Dy1||c===this.pin1Dy01;if(null!=this.imageView&&f==l||l&&!h||c===this.cur1D2x1&&null==this.gs2dLinkedX||c===this.cur1D2x2&&null==this.gs2dLinkedY||c===this.zoomBox1D&&(this.pd.isIntegralDrag||0!=this.pd.integralShiftMode))if(!this.isLinked||null!=this.imageView)continue}if(!this.pd.isPrinting||j)c.isPinOrCursor?(this.setColorFromToken(a,c.color),
this.g2d.drawLine(a,c.xPixel0,c.yPixel0,c.xPixel1,c.yPixel1),c.isVisible=!0,c.isPin&&this.drawHandle(a,c.xPixel0,c.yPixel0,2,!c.isEnabled)):c.xPixel1!=c.xPixel0&&this.fillBox(b,c.xPixel0,c.yPixel0,c.xPixel1,c.yPixel1,c===this.zoomBox1D&&this.pd.shiftPressed?JSV.common.ScriptToken.ZOOMBOXCOLOR2:JSV.common.ScriptToken.ZOOMBOXCOLOR)}}}},"~O,~O,~N,~B,~B,~B,~B");c(c$,"drawBar",function(a,b,d,c,f,h){Math.abs(c-d);Math.abs(this.toX(this.xPixel1)-this.toX(this.xPixel0));d=this.toPixelX(d);c=this.toPixelX(c);
if(d>c){var e=d;d=c;c=e}d=this.fixX(d);c=this.fixX(c);3>c-d&&(d-=2,c+=2);null!=b&&b.setPixelRange(d,c);0==h?this.fillBox(a,d,this.yPixel0,c,this.yPixel0+this.yPixels,f):(this.fillBox(a,d,this.yPixel0+2,c,this.yPixel0+5,f),null!=b&&(d=x((d+c)/2),this.fillBox(a,d-1,this.yPixel0+2,d+1,this.yPixel0+2+h,f)))},"~O,JSV.common.PeakInfo,~N,~N,JSV.common.ScriptToken,~N");c(c$,"drawIntegration",function(a,b,d,c,f){null!=f&&(this.haveIntegralDisplayed(b)&&this.drawPlot(a,b,this.spectra.get(b),!0,d,!1,f,!0,!1,
!1),this.drawIntegralValues(a,b,d));b=this.getIntegrationRatios(b);null!=b&&this.drawAnnotations(a,b,JSV.common.ScriptToken.INTEGRALPLOTCOLOR)},"~O,~N,~N,~B,JSV.common.IntegralData,~B,~B");c(c$,"getMeasurements",function(a,b){var d=this.getDialog(a,b);return null==d||0==d.getData().size()||!d.getState()?null:d.getData()},"JSV.common.Annotation.AType,~N");c(c$,"drawPlot",function(a,b,d,c,f,h,e,j,l,p){var n=null==e?d.getXYCoords():this.getIntegrationGraph(b).getXYCoords(),m=null!=e;e=m?e.getBitSet():
null;j=l||null!=d.fillColor&&j;h=h?-2:m?-1:!this.allowStacking?0:b;this.setPlotColor(a,h);var q=!0,k=this.toPixelY(0);m?j=(new Boolean(j&k==this.fixY(k))).valueOf():k=this.fixY(k);var s=m||j?this.pd.getColor(JSV.common.ScriptToken.INTEGRALPLOTCOLOR):null;d=null==s||null==d.fillColor?s:d.fillColor;s=this.viewData.getStartingPointIndex(b);b=this.viewData.getEndingPointIndex(b);if(c&&!p){b--;(p=(m||null!=this.pendingIntegral)&&this.g2d.canDoLineTo())&&this.g2d.doStroke(a,!0);var t=!1;for(c=s;c<=b;c++){var u=
n[c],v=n[c+1],w=m?this.toPixelYint(u.getYVal()):this.toPixelY(u.getYVal());if(-2147483648!=w){var x=m?this.toPixelYint(v.getYVal()):this.toPixelY(v.getYVal());if(-2147483648!=x){var u=u.getXVal(),y=v.getXVal(),v=this.toPixelX(u),z=this.toPixelX(y),w=this.fixY(f+w),x=this.fixY(f+x);m&&(c==s&&(this.xPixelPlot1=v,this.yPixelPlot0=w),this.xPixelPlot0=z,this.yPixelPlot1=x);if(!(z==v&&w==x))if(j&&l&&this.pendingIntegral.overlaps(u,y))null!=d&&(this.g2d.doStroke(a,!1),this.g2d.setGraphicsColor(a,d)),this.g2d.fillRect(a,
Math.min(v,z),Math.min(k,w),Math.max(1,Math.abs(z-v)),Math.abs(k-w)),null!=d&&(this.g2d.doStroke(a,!1),this.g2d.doStroke(a,!0),t=!1,this.setPlotColor(a,h));else if(!(w==x&&w==this.yPixel0)&&(null!=e&&e.get(c)!=q&&(q=e.get(c),p&&t&&(this.g2d.doStroke(a,!1),this.g2d.doStroke(a,!0),t=!1),!this.pd.isPrinting&&0!=this.pd.integralShiftMode?this.setPlotColor(a,0):q?this.setColorFromToken(a,JSV.common.ScriptToken.INTEGRALPLOTCOLOR):this.setPlotColor(a,-3)),!this.pd.isPrinting||q))t?this.g2d.lineTo(a,z,x):
(this.g2d.drawLine(a,v,w,z,x),t=p)}}}p&&this.g2d.doStroke(a,!1)}else{for(c=s;c<=b;c++)l=n[c],x=this.toPixelY(l.getYVal()),-2147483648!=x&&(v=this.toPixelX(l.getXVal()),w=this.toPixelY(Math.max(this.getScale().minYOnScale,0)),w=this.fixY(f+w),x=this.fixY(f+x),w==x&&(w==this.yPixel0||w==this.yPixel1)||(p?this.g2d.fillRect(a,v-1,x-1,3,3):this.g2d.drawLine(a,v,w,v,x)));!p&&this.getScale().isYZeroOnScale()&&(f+=this.toPixelY(this.getScale().spectrumYRef),f==this.fixY(f)&&this.g2d.drawLine(a,this.xPixel1,
f,this.xPixel0,f))}},"~O,~N,JSV.common.Spectrum,~B,~N,~B,JSV.common.IntegralData,~B,~B,~B");c(c$,"drawFrame",function(a,b,d,c,f){if(!this.pd.gridOn||this.pd.isPrinting)if(this.setColorFromToken(a,JSV.common.ScriptToken.GRIDCOLOR),this.g2d.drawRect(a,this.xPixel0,this.yPixel0,this.xPixels,this.yPixels),this.pd.isPrinting)return;this.setCurrentBoxColor(a);f&&(0<=b&&(this.setPlotColor(a,b),this.fillArrow(a,3,this.xVArrows,x((this.yPixel00+this.yPixel11)/2)-9,!0),this.fillArrow(a,4,this.xVArrows,x((this.yPixel00+
this.yPixel11)/2)+9,!0),this.setCurrentBoxColor(a)),this.fillArrow(a,3,this.xVArrows,x((this.yPixel00+this.yPixel11)/2)-9,!1),this.fillCircle(a,this.xVArrows,x((this.yPixel00+this.yPixel11)/2),!1),this.fillArrow(a,4,this.xVArrows,x((this.yPixel00+this.yPixel11)/2)+9,!1));if(null==this.imageView&&d){b=this.xPixel00+10;d=this.xPixel11-10;f=this.yPixel00+1;var e=this.yPixel11-2;this.g2d.drawLine(a,b,f,d,f);this.g2d.drawLine(a,d,f,d,e);this.g2d.drawLine(a,b,e,d,e);this.splitterX=this.closerX=-2147483648;
this.drawBox(a,d-10,f,d,f+10,null);this.g2d.drawLine(a,d-10,f+10,d,f);this.g2d.drawLine(a,d,f+10,d-10,f);this.closerX=d-10;this.closerY=f;c&&(d-=10,this.fillBox(a,d-10,f,d,f+10,null),this.splitterX=d-10,this.splitterY=f)}},"~O,~N,~B,~B,~B");c(c$,"drawGrid",function(a){if(this.pd.gridOn&&null==this.imageView){this.setColorFromToken(a,JSV.common.ScriptToken.GRIDCOLOR);var b;if(Double.isNaN(this.getScale().firstX)){b=this.getScale().maxXOnScale+this.getScale().steps[0]/2;for(var d=this.getScale().minXOnScale;d<
b;d+=this.getScale().steps[0]){var c=this.toPixelX(d);this.g2d.drawLine(a,c,this.yPixel0,c,this.yPixel1)}}else{b=1.0001*this.getScale().maxXOnScale;for(d=this.getScale().firstX;d<=b;d+=this.getScale().steps[0])c=this.toPixelX(d),this.g2d.drawLine(a,c,this.yPixel0,c,this.yPixel1)}for(d=this.getScale().firstY;d<this.getScale().maxYOnScale+this.getScale().steps[1]/2;d+=this.getScale().steps[1])b=this.toPixelY(d),b==this.fixY(b)&&this.g2d.drawLine(a,this.xPixel0,b,this.xPixel1,b)}},"~O");c(c$,"drawXScale",
function(a,b){this.setColorFromToken(a,JSV.common.ScriptToken.SCALECOLOR);this.pd.isPrinting&&this.g2d.drawLine(a,b.getXPixel0(),this.yPixel1,b.getXPixel0()+b.getXPixels()-1,this.yPixel1);for(var d=this.getScale().precision[0],c=this.pd.setFont(a,b.getXPixels(),0,this.pd.isPrinting?10:12,!1),f=this.yPixel1,e=this.yPixel1+4*this.pd.scalingFactor,r=this.yPixel1+2*this.pd.scalingFactor,c=c.getHeight(),j=b.toPixelX(this.getScale().steps[0])-b.toPixelX(0),l=Math.abs(0.95*j),p=this.getScale().firstX-this.getScale().steps[0],
n=1.0001*(this.getScale().maxXOnScale+this.getScale().steps[0]),m=0;2>m;m++){1==m&&JSV.common.ScaleData.fixScale(this.mapX);for(var q=1E10,k=p;k<=n;k+=this.getScale().steps[0]){var j=b.toPixelX(k),s=Double.$valueOf(k),t;switch(m){case 0:t=JU.DF.formatDecimalDbl(k,d);this.mapX.put(s,t);this.drawTick(a,j,f,e,b);j=Math.abs(q-k);q=this.getScale().minorTickCounts[0];if(0!=q){j/=q;for(t=1;t<q;t++)this.drawTick(a,b.toPixelX(k-t*j),f,r,b)}q=k;continue;case 1:t=this.mapX.get(s);if(null==t||j!=b.fixX(j))continue;
var s=this.pd.getStringWidth(t),u=j+x(s/2)==b.fixX(j+x(s/2))?2:0;0<u&&this.g2d.drawString(a,t,j-x(s/u),e+c);k+=Math.floor(s/l)*this.getScale().steps[0]}}}this.mapX.clear()},"~O,JSV.common.XYScaleConverter");c(c$,"drawTick",function(a,b,d,c,f){b==f.fixX(b)&&this.g2d.drawLine(a,b,d,b,c)},"~O,~N,~N,~N,JSV.common.XYScaleConverter");c(c$,"drawYScale",function(a,b){var d=b.getScale(),c=d.precision[1],f=this.pd.setFont(a,b.getXPixels(),0,this.pd.isPrinting?10:12,!1).getHeight(),e=d.maxYOnScale+d.steps[1]/
2,r=-2147483648;this.setColorFromToken(a,JSV.common.ScriptToken.SCALECOLOR);for(var j=0;2>j;j++){1==j&&JSV.common.ScaleData.fixScale(this.mapX);for(var l=d.firstY;l<e;l+=d.steps[1]){var p=Double.$valueOf(l),n=b.getXPixel0(),m=b.toPixelY(l);if(m==b.fixY(m)){var k;0==j&&this.g2d.drawLine(a,n,m,n-3*this.pd.scalingFactor,m);if(!(Math.abs(m-r)<=f))switch(r=m,j){case 0:k=JU.DF.formatDecimalDbl(l,c);this.mapX.put(p,k);break;case 1:k=this.mapX.get(p);if(null==k)continue;k.startsWith("0")&&k.contains("E")&&
(k="0");this.g2d.drawString(a,k,n-4*this.pd.scalingFactor-this.pd.getStringWidth(k),m+x(f/3))}}}}this.mapX.clear()},"~O,JSV.common.XYScaleConverter");c(c$,"drawXUnits",function(a){var b=this.spectra.get(0).getAxisLabel(!0);null!=b&&this.drawUnits(a,b,this.xPixel1+25*this.pd.scalingFactor,this.yPixel1+5*this.pd.scalingFactor,1,1)},"~O");c(c$,"drawUnits",function(a,b,d,c,f,e){this.setColorFromToken(a,JSV.common.ScriptToken.UNITSCOLOR);this.pd.setFont(a,(null==this.imageView?this:this.imageView).getXPixels(),
3,10,!1);this.g2d.drawString(a,b,x(d-this.pd.getStringWidth(b)*f),x(c+this.pd.getFontHeight()*e))},"~O,~S,~N,~N,~N,~N");c(c$,"drawYUnits",function(a){var b=this.spectra.get(0).getAxisLabel(!1);null!=b&&this.drawUnits(a,b,(this.pd.isPrinting?30:5)*this.pd.scalingFactor,this.yPixel0+(this.pd.isPrinting?0:5)*this.pd.scalingFactor,0,-1)},"~O");c(c$,"drawHighlightsAndPeakTabs",function(a,b,d){var c=this.getMeasurements(JSV.common.Annotation.AType.PeakList,d),f=this.spectra.get(d);if(this.pd.isPrinting)null!=
c&&(this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR),this.printPeakList(a,f,c));else{if(null==c){for(var e=0;e<this.highlights.size();e++){var r=this.highlights.get(e);r.spectrum===f&&(this.pd.setHighlightColor(r.color),this.drawBar(b,null,r.x1,r.x2,JSV.common.ScriptToken.HIGHLIGHTCOLOR,0))}this.pd.peakTabsOn&&this.drawPeakTabs(a,b,f)}if(null!=c){b=f.isInverted()?this.yPixel1-10*this.pd.scalingFactor:this.yPixel0;this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR);for(e=c.size();0<=
--e;)f=c.get(e),f=this.toPixelX(f.getXVal()),this.g2d.drawLine(a,f,b,f,b+10*this.pd.scalingFactor);this.isVisible(this.getDialog(JSV.common.Annotation.AType.PeakList,d))&&(b=this.toPixelY(c.getThresh()),b==this.fixY(b)&&!this.pd.isPrinting&&this.g2d.drawLine(a,this.xPixel0,b,this.xPixel1,b))}}},"~O,~O,~N");c(c$,"printPeakList",function(a,b,d){var c=d.getMeasurementListArray(null);if(0!=c.length){this.pd.setFont(a,this.xPixels,0,8,!1);for(var f=this.pd.getFontHeight(),e=E(d.size(),0),r=E(d.size(),
0),j=0,l=5*this.pd.scalingFactor,p=10*this.pd.scalingFactor,n=15*this.pd.scalingFactor,m=25*this.pd.scalingFactor,k=0;k<c.length;k++)r[k]=this.toPixelX(Double.parseDouble(c[k][1])),0==k?e[k]=r[k]:(e[k]=Math.max(e[k-1]+f,r[k]+f),j+=e[k]-r[k]);j/=2*c.length;e[0]-j<this.xPixel0+m&&(j=e[0]-(this.xPixel0+m));for(k=0;k<c.length;k++)e[k]-=j;k=b.isInverted();b=this.pd.getStringWidth("99.9999");for(var j=6<=c[0].length?this.pd.getStringWidth("99.99"):0,m=k?-1:1,q=(k?this.yPixel1:this.yPixel0)+m*(j+b+n),k=
0;k<c.length;k++)this.g2d.drawLine(a,e[k],q,e[k],q+l*m),this.g2d.drawLine(a,e[k],q+l*m,r[k],q+p*m),this.g2d.drawLine(a,r[k],q+p*m,r[k],q+n*m),0<j&&0<c[k][4].length&&this.g2d.drawLine(a,x((e[k]+e[k-1])/2),q-b+l,x((e[k]+e[k-1])/2),q-b-l);q-=2*m*this.pd.scalingFactor;0<j&&(this.drawStringRotated(a,-90,e[0]-n,q,"  ppm"),this.drawStringRotated(a,-90,e[0]-n,q-b-l," Hz"));for(k=d.size();0<=--k;)this.drawStringRotated(a,-90*m,e[k]+x(m*f/3),q,c[k][1]),0<j&&0<c[k][4].length&&(d=x((e[k]+e[k-1])/2)+x(f/3),this.drawStringRotated(a,
-90,d,q-b-l,c[k][4]))}},"~O,JSV.common.Spectrum,JSV.common.PeakData");c(c$,"drawStringRotated",function(a,b,d,c,f){this.g2d.drawStringRotated(a,f,d,c,b)},"~O,~N,~N,~N,~S");c(c$,"drawAnnotations",function(a,b,d){this.pd.setFont(a,this.xPixels,1,18,!1);for(var c=b.size();0<=--c;){var f=b.get(c);this.setAnnotationColor(a,f,d);var e=(f.is2D?this.imageView:this).toPixelX(f.getXVal()),r=f.isPixels()?x(this.yPixel0+10+10*this.pd.scalingFactor-f.getYVal()):f.is2D?this.imageView.subIndexToPixelY(x(f.getYVal())):
this.toPixelY(f.getYVal());this.g2d.drawString(a,f.text,e+f.offsetX*this.pd.scalingFactor,r-f.offsetY*this.pd.scalingFactor)}},"~O,JU.Lst,JSV.common.ScriptToken");c(c$,"drawIntegralValues",function(a,b,d){var c=this.getMeasurements(JSV.common.Annotation.AType.Integration,b);if(null!=c){this.pd.isPrinting?this.pd.setFont(a,this.xPixels,0,8,!1):this.pd.setFont(a,this.xPixels,1,12,!1);this.setColorFromToken(a,JSV.common.ScriptToken.INTEGRALPLOTCOLOR);var f=this.pd.getFontHeight();this.g2d.setStrokeBold(a,
!0);for(var e=c.size();0<=--e;){var r=c.get(e);if(0!=r.getValue()){var j=this.toPixelX(r.getXVal2()),l=d*this.pd.scalingFactor+this.toPixelYint(r.getYVal()),p=d*this.pd.scalingFactor+this.toPixelYint(r.getYVal2());j!=this.fixX(j)||(l!=this.fixY(l)||p!=this.fixY(p))||(this.pd.isPrinting||this.g2d.drawLine(a,j,l,j,p),this.g2d.drawString(a,"  "+r.text,j,x((l+p)/2)+x(f/3)))}}this.g2d.setStrokeBold(a,!1)}b==this.getFixedSelectedSpectrumIndex()&&(this.selectedSpectrumIntegrals=c)},"~O,~N,~N");c(c$,"drawMeasurements",
function(a,b){var d=this.getMeasurements(JSV.common.Annotation.AType.Measurements,b);if(null!=d)for(var c=d.size();0<=--c;)this.drawMeasurement(a,d.get(c));b==this.getFixedSelectedSpectrumIndex()&&(this.selectedSpectrumMeasurements=d)},"~O,~N");c(c$,"drawMeasurement",function(a,b){if(!(0==b.text.length&&b!==this.pendingMeasurement)){this.pd.setFont(a,this.xPixels,1,12,!1);this.g2d.setGraphicsColor(a,b===this.pendingMeasurement?this.pd.getColor(JSV.common.ScriptToken.PEAKTABCOLOR):this.pd.BLACK);var d=
this.toPixelX(b.getXVal()),c=this.toPixelY(b.getYVal()),f=this.toPixelX(b.getXVal2());if(!Double.isNaN(b.getXVal())&&!(d!=this.fixX(d)||f!=this.fixX(f))){var e=2<=Math.abs(d-f),r=this.getScale().isYZeroOnScale()&&b.spec.isHNMR(),j=x((d+f)/2);this.g2d.setStrokeBold(a,!0);e&&this.g2d.drawLine(a,d,c,f,c);r&&this.g2d.drawLine(a,d+1,this.yPixel1-1,f,this.yPixel1-1);this.g2d.setStrokeBold(a,!1);e&&this.g2d.drawString(a,b.text,j+b.offsetX,c-b.offsetY);r&&(this.g2d.drawLine(a,d,this.yPixel1,d,this.yPixel1-
6*this.pd.scalingFactor),this.g2d.drawLine(a,f,this.yPixel1,f,this.yPixel1-6*this.pd.scalingFactor))}}},"~O,JSV.common.Measurement");c(c$,"getPinSelected",function(a,b){if(null!=this.widgets)for(var d=0;d<this.widgets.length;d++)if(null!=this.widgets[d]&&this.widgets[d].isPinOrCursor&&this.widgets[d].selected(a,b))return this.widgets[d];return null},"~N,~N");c(c$,"set2DCrossHairs",function(a,b){var d;if(a==this.imageView.fixX(a)&&b==this.fixY(b)&&(this.pin1Dx1.setX(d=this.imageView.toX(a),this.toPixelX(d)),
this.cur2Dx1.setX(d,a),this.setCurrentSubSpectrum(this.imageView.toSubspectrumIndex(b)),this.isLinked)){var c=this.imageView.toY(b);this.pd.set2DCrossHairsLinked(this,d,c,!this.sticky2Dcursor)}},"~N,~N");c(c$,"reset2D",function(a){a?(this.imageView.setView0(this.imageView.xPixel0,this.pin2Dy0.yPixel0,this.imageView.xPixel1,this.pin2Dy1.yPixel0),this.doZoom(0,this.getScale().minY,0,this.getScale().maxY,!0,!1,!1,!1,!0)):this.imageView.setView0(this.pin2Dx0.xPixel0,this.imageView.yPixel0,this.pin2Dx1.xPixel0,
this.imageView.yPixel1)},"~B");c(c$,"setAnnotationText",function(a){var b=this.pd.getInput("New text?","Set Label",a.text);if(null==b)return!1;0==b.length?this.annotations.removeObj(a):a.text=b;return!0},"JSV.common.Annotation");c(c$,"checkIntegral",function(a,b,d){var c=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==c)return!1;a=c.getData().addIntegralRegion(a,b);d&&c.isDialog()&&c.update(null,0,0);if(Double.isNaN(b))return!1;this.pendingIntegral=d?null:a;this.pd.isIntegralDrag=
!d;this.selectedSpectrumIntegrals=null;return!0},"~N,~N,~B");c(c$,"setToolTipForPixels",function(a,b){if(this.iSpectrumMovedTo!=this.iSpectrumClicked||this.pd.getCurrentGraphSet()!==this)this.pd.setToolTipText("click spectrum to activate");else if(this.isSplitWidget(a,b))this.pd.setToolTipText("click to "+(1<this.nSplit?"combine":"split"));else if(this.isCloserWidget(a,b))this.pd.setToolTipText("click to close");else{var d=this.getPinSelected(a,b),c=this.getScale().precision[0],f=this.getScale().precision[1];
if(null!=d)this.setStartupPinTip()||(d===this.pin1Dx01||d===this.pin2Dx01?c=JU.DF.formatDecimalDbl(Math.min(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal()),c)+" - "+JU.DF.formatDecimalDbl(Math.max(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal()),c):d===this.pin1Dy01?c=JU.DF.formatDecimalDbl(Math.min(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal()),f)+" - "+JU.DF.formatDecimalDbl(Math.max(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal()),f):d===this.cur2Dy?(d=this.imageView.toSubspectrumIndex(d.yPixel0),c=
this.get2DYLabel(d,c)):c=d===this.pin2Dy01?""+x(Math.min(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal()))+" - "+x(Math.max(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal())):d.isXtype?JU.DF.formatDecimalDbl(d.getXVal(),c):d.is2D?""+x(d.getYVal()):JU.DF.formatDecimalDbl(d.getYVal(),f),this.pd.setToolTipText(c));else{if(null!=this.imageView){if(this.imageView.fixX(a)==a&&this.fixY(b)==b){d=this.imageView.toSubspectrumIndex(b);c="y="+this.get2DYLabel(d,c)+" / x="+JU.DF.formatDecimalDbl(this.imageView.toX(a),
c)+" "+this.getSpectrum().getAxisLabel(!0);this.pd.setToolTipText(c);this.pd.coordStr=c;return}if(!this.pd.display1D){this.pd.setToolTipText("");this.pd.coordStr="";return}}var d=this.toX(this.fixX(a)),c=null!=this.imageView&&this.imageView.isXWithinRange(a)?this.imageView.toSubspectrumIndex(this.fixY(b)):this.toY(this.fixY(b)),f=this.setCoordStr(d,c),e=this.getFixedSelectedSpectrumIndex();this.isInPlotRegion(a,b)?1!=this.nSpectra&&this.haveIntegralDisplayed(e)&&(c=this.getIntegrationGraph(e).getPercentYValueAt(d),
f+=", "+JU.DF.formatDecimalDbl(c,1)):c=NaN;this.pd.setToolTipText(null!=this.selectedIntegral?"click to set value":null!=this.pendingMeasurement||null!=this.selectedMeasurement?this.pd.hasFocus()?"Press ESC to delete "+(null!=this.selectedIntegral?"integral, DEL to delete all visible, or N to normalize":null==this.pendingMeasurement?'"'+this.selectedMeasurement.text+'" or DEL to delete all visible':"measurement"):"":Double.isNaN(c)?null:f)}}},"~N,~N");c(c$,"isFrameBox",function(a,b,d,c){return 5>
Math.abs(a-(d+5))&&5>Math.abs(b-(c+5))},"~N,~N,~N,~N");c(c$,"setCoordStr",function(a,b){var d=JU.DF.formatDecimalDbl(a,this.getScale().precision[0]);this.pd.coordStr="("+d+(this.haveSingleYScale||0<=this.iSpectrumSelected?", "+JU.DF.formatDecimalDbl(b,this.getScale().precision[1]):"")+")";return d},"~N,~N");c(c$,"setStartupPinTip",function(){if(null==this.pd.startupPinTip)return!1;this.pd.setToolTipText(this.pd.startupPinTip);this.pd.startupPinTip=null;return!0});c(c$,"get2DYLabel",function(a,b){var d=
this.getSpectrumAt(0).getSubSpectra().get(a);return JU.DF.formatDecimalDbl(d.getY2DPPM(),b)+" PPM"+(d.y2DUnits.equals("HZ")?" ("+JU.DF.formatDecimalDbl(d.getY2D(),b)+" HZ) ":"")},"~N,~N");c(c$,"isOnSpectrum",function(a,b,d){var c=null,f=!0,e=0>d;if(e){c=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==c)return!1;c=c.getData().getXYCoords();d=this.getFixedSelectedSpectrumIndex()}else{this.setScale(d);var r=this.spectra.get(d),c=r.xyCoords,f=r.isContinuous()}var r=d*G(this.yPixels*
(this.yStackOffsetPercent/100)),j=this.viewData.getStartingPointIndex(d);d=this.viewData.getEndingPointIndex(d);if(f)for(f=j;f<d;f++){var l=c[f],p=c[f+1],j=this.toPixelX(l.getXVal()),k=this.toPixelX(p.getXVal()),l=e?this.toPixelYint(l.getYVal()):this.toPixelY(l.getYVal()),p=e?this.toPixelYint(p.getYVal()):this.toPixelY(p.getYVal());if(!(-2147483648==l||-2147483648==p))if(l=this.fixY(l)-r,p=this.fixY(p)-r,JSV.common.GraphSet.isOnLine(a,b,j,l,k,p))return!0}else for(f=j;f<=d;f++)if(e=c[f],p=this.toPixelY(e.getYVal()),
-2147483648!=p&&(j=this.toPixelX(e.getXVal()),l=this.toPixelY(Math.max(this.getScale().minYOnScale,0)),l=this.fixY(l),p=this.fixY(p),!(l==p&&(l==this.yPixel0||l==this.yPixel1))&&JSV.common.GraphSet.isOnLine(a,b,j,l,j,p)))return!0;return!1},"~N,~N,~N");c$.distance=c(c$,"distance",function(a,b){return Math.sqrt(a*a+b*b)},"~N,~N");c$.findCompatibleGraphSet=c(c$,"findCompatibleGraphSet",function(a,b){for(var d=0;d<a.size();d++)if(JSV.common.Spectrum.areXScalesCompatible(b,a.get(d).getSpectrum(),!1,!1))return a.get(d);
return null},"JU.Lst,JSV.common.Spectrum");c$.isGoodEvent=c(c$,"isGoodEvent",function(a,b,d){return null==b?5<Math.abs(a.xPixel1-a.xPixel0)&&5<Math.abs(a.yPixel1-a.yPixel0):d?5<Math.abs(a.xPixel0-b.xPixel0):5<Math.abs(a.yPixel0-b.yPixel0)},"JSV.common.PlotWidget,JSV.common.PlotWidget,~B");c$.isOnLine=c(c$,"isOnLine",function(a,b,d,c,f,e){var r=Math.abs(d-a);if(2>r&&2>Math.abs(c-b))return!0;var j=f-a;if(2>Math.abs(j)&&2>Math.abs(e-b))return!0;var l=c-e;if(2<Math.abs(l)&&c<b==e<b)return!1;var p=d-f;
return 2<Math.abs(p)&&d<a==f<a?!1:JSV.common.GraphSet.distance(r,c-b)+JSV.common.GraphSet.distance(j,b-e)<JSV.common.GraphSet.distance(p,l)+2},"~N,~N,~N,~N,~N,~N");c$.setFractionalPositions=c(c$,"setFractionalPositions",function(a,b,d){var c=b.size(),f=0,e=0;a.isLinked=d!==JSV.common.PanelData.LinkMode.NONE;if(d===JSV.common.PanelData.LinkMode.NONE){for(var r=0;r<c;r++)d=b.get(r),f+=(d.getSpectrumAt(0).is1D(),1)*d.nSplit;f=1/f;for(r=0;r<c;r++)d=b.get(r),d.isLinked=!1,a=d.getSpectrumAt(0).is1D()?f:
1*f,d.fX0=0,d.fY0=e,d.fracX=1,d.fracY=a,e+=a*d.nSplit}else{var f=null,j=-1;if(2==c||3==c)for(r=0;r<c;r++)if(d=b.get(r),!d.getSpectrum().is1D()){f=d;0<=j&&(r=-2);j=r;break}if(-2==j||-1==j&&2!=c)JSV.common.GraphSet.setFractionalPositions(a,b,JSV.common.PanelData.LinkMode.NONE);else for(r=0;r<c;r++)d=b.get(r),d.isLinked=!0,a=d.getSpectrumAt(0),a.is1D()?(null!=f&&(j=f.getSpectrumAt(0),JSV.common.Spectrum.areLinkableX(a,j)&&(d.gs2dLinkedX=f),JSV.common.Spectrum.areLinkableY(a,j)&&(d.gs2dLinkedY=f)),d.fX0=
0,d.fY0=e,d.fracX=null==f?1:0.5,d.fracY=3==c||null==f?0.5:1,e+=0.5):(d.fX0=0.5,d.fY0=0,d.fracX=0.5,d.fracY=1)}},"JSV.common.PanelData,JU.Lst,JSV.common.PanelData.LinkMode");c(c$,"addAnnotation",function(a,b){if(0==a.size()||1==a.size()&&a.get(0).equalsIgnoreCase("none"))return this.lastAnnotation=this.annotations=null;4>a.size()&&null==this.lastAnnotation&&(this.lastAnnotation=this.getAnnotation((this.getScale().maxXOnScale+this.getScale().minXOnScale)/2,(this.getScale().maxYOnScale+this.getScale().minYOnScale)/
2,b,!1,!1,0,0));var d=this.getAnnotation(a,this.lastAnnotation);if(null==d)return null;if(null==this.annotations&&1==a.size()&&'"'==a.get(0).charAt(0))return d=d.text,this.getSpectrum().setTitle(d),d;this.lastAnnotation=d;this.addAnnotation(d,!1);return null},"JU.Lst,~S");c(c$,"addHighlight",function(a,b,d,c){null==d&&(d=this.getSpectrumAt(0));a=I(JSV.common.GraphSet.Highlight,this,null,a,b,d,null==c?this.pd.getColor(JSV.common.ScriptToken.HIGHLIGHTCOLOR):c);this.highlights.contains(a)||this.highlights.addLast(a)},
"~N,~N,JSV.common.Spectrum,javajs.api.GenericColor");c(c$,"addPeakHighlight",function(a){for(var b=this.spectra.size();0<=--b;){var d=this.spectra.get(b);this.removeAllHighlights(d);if(!(null==a||a.isClearAll()||d!==a.spectrum)){var c=a.toString();if(null!=c){var f=JU.PT.getQuotedAttribute(c,"xMin"),c=JU.PT.getQuotedAttribute(c,"xMax");if(null==f||null==c)break;f=JU.PT.parseFloat(f);c=JU.PT.parseFloat(c);if(Float.isNaN(f)||Float.isNaN(c))break;this.pd.addHighlight(this,f,c,d,200,140,140,100);d.setSelectedPeak(a);
!this.getScale().isInRangeX(f)&&!(this.getScale().isInRangeX(c)||f<this.getScale().minX&&this.getScale().maxX<c)&&this.setZoomTo(0)}}}},"JSV.common.PeakInfo");c(c$,"advanceSubSpectrum",function(a){var b=this.getSpectrumAt(0);a=b.advanceSubSpectrum(a);b.isForcedSubset()&&this.viewData.setXRangeForSubSpectrum(this.getSpectrum().getXYCoords());this.pd.notifySubSpectrumChange(a,this.getSpectrum())},"~N");c(c$,"checkSpectrumClickedEvent",function(a,b,d){if(null!=this.nextClickForSetPeak||(1<d||null!=this.pendingMeasurement||
!this.isInPlotRegion(a,b))||0==d&&(d=this.isOnSpectrum(a,b,-1),this.pd.integralShiftMode=d?this.getShiftMode(a,b):0,this.pd.isIntegralDrag=0==this.pd.integralShiftMode&&(d||this.haveIntegralDisplayed(-1)&&null!=this.findMeasurement(this.getIntegrationGraph(-1),a,b,0)),0!=this.pd.integralShiftMode)||!this.showAllStacked)return!1;this.stackSelected=!1;for(d=0;d<this.nSpectra;d++)if(this.isOnSpectrum(a,b,d))return this.setSpectrumClicked(this.iPreviousSpectrumClicked=d),!1;if(this.isDialogOpen())return!1;
this.setSpectrumClicked(-1);return this.stackSelected=!1},"~N,~N,~N");c(c$,"getShiftMode",function(a,b){return this.isStartEndIntegral(a,!1)?b:this.isStartEndIntegral(a,!0)?-b:0},"~N,~N");c(c$,"isDialogOpen",function(){return this.isVisible(this.getDialog(JSV.common.Annotation.AType.Integration,-1))||this.isVisible(this.getDialog(JSV.common.Annotation.AType.Measurements,-1))||this.isVisible(this.getDialog(JSV.common.Annotation.AType.PeakList,-1))});c(c$,"isStartEndIntegral",function(a,b){return b?
20>this.xPixelPlot1-a:20>a-this.xPixelPlot0},"~N,~B");c(c$,"checkWidgetEvent",function(a,b,d){if(!this.widgetsAreSet)return!1;this.widgetsAreSet=!1;if(d){if(2==this.pd.clickCount&&this.lastIntDragX!=a&&!this.is2dClick(a,b)){if(null==this.pendingMeasurement)return-1==this.iSpectrumClicked&&0<=this.iPreviousSpectrumClicked&&this.setSpectrumClicked(this.iPreviousSpectrumClicked),this.processPendingMeasurement(a,b,2),!0}else if(!this.is2dClick(a,b)&&(this.isOnSpectrum(a,b,-1)&&this.checkIntegral(this.toX(a),
NaN,!1),this.lastIntDragX==a&&(this.pd.isIntegralDrag=!0,!this.checkIntegral(this.toX(a),this.toX(a),!1))))return!1;if(null!=this.pendingMeasurement)return!0;d=this.getPinSelected(a,b);null==d&&(b=this.fixY(b),a<this.xPixel1?(this.pd.shiftPressed&&this.setSpectrumClicked(this.iPreviousSpectrumClicked),a=this.fixX(a),null==this.zoomBox1D&&this.newPins(),this.zoomBox1D.setX(this.toX(a),a),this.zoomBox1D.yPixel0=b,d=this.zoomBox1D):null!=this.imageView&&a<this.imageView.xPixel1&&(this.zoomBox2D.setX(this.imageView.toX(a),
this.imageView.fixX(a)),this.zoomBox2D.yPixel0=b,d=this.zoomBox2D));this.pd.thisWidget=d;return!1}this.nextClickForSetPeak=null;d=this.pd.thisWidget;if(null==d)return!1;if(d===this.zoomBox1D)return this.zoomBox1D.xPixel1=this.fixX(a),this.zoomBox1D.yPixel1=this.fixY(b),this.pd.isIntegralDrag&&this.zoomBox1D.xPixel0!=this.zoomBox1D.xPixel1&&(this.lastIntDragX<=a!=this.zoomBox1D.xPixel0<=a&&(this.zoomBox1D.xPixel0=this.lastIntDragX,this.zoomBox1D.xPixel1=a,this.zoomBox1D.setXVal(this.toX(this.zoomBox1D.xPixel0))),
this.lastIntDragX=a,this.checkIntegral(this.zoomBox1D.getXVal(),this.toX(this.zoomBox1D.xPixel1),!1)),!1;if(!this.zoomEnabled)return!1;if(d===this.zoomBox2D)return this.zoomBox2D.xPixel1=this.imageView.fixX(a),this.zoomBox2D.yPixel1=this.fixY(b),!0;if(d===this.cur2Dy)return b=this.fixY(b),this.cur2Dy.yPixel0=this.cur2Dy.yPixel1=b,this.setCurrentSubSpectrum(this.imageView.toSubspectrumIndex(b)),!0;if(d===this.cur2Dx0||d===this.cur2Dx1)return!1;if(d===this.pin1Dx0||d===this.pin1Dx1||d===this.pin1Dx01){a=
this.fixX(a);d.setX(this.toX0(a),a);if(d===this.pin1Dx01){d=a-x((this.pin1Dx0.xPixel0+this.pin1Dx1.xPixel0)/2);a=this.pin1Dx0.xPixel0+d;b=this.pin1Dx1.xPixel0+d;if(0==d||this.fixX(a)!=a||this.fixX(b)!=b)return!0;this.pin1Dx0.setX(this.toX0(a),a);this.pin1Dx1.setX(this.toX0(b),b)}this.doZoom(this.pin1Dx0.getXVal(),0,this.pin1Dx1.getXVal(),0,!0,!1,!1,!0,!1);return!0}if(d===this.pin1Dy0||d===this.pin1Dy1||d===this.pin1Dy01){b=this.fixY(b);d.setY(this.toY0(b),b);if(d===this.pin1Dy01){d=b-x((this.pin1Dy0.yPixel0+
this.pin1Dy1.yPixel0)/2)+1;b=this.pin1Dy0.yPixel0+d;a=this.pin1Dy1.yPixel0+d;d=this.toY0(b);var c=this.toY0(a);if(Math.min(d,c)==this.getScale().minY||Math.max(d,c)==this.getScale().maxY)return!0;this.pin1Dy0.setY(d,b);this.pin1Dy1.setY(c,a)}this.doZoom(0,this.pin1Dy0.getYVal(),0,this.pin1Dy1.getYVal(),null==this.imageView,null==this.imageView,!1,!1,!1);return!0}if(d===this.pin2Dx0||d===this.pin2Dx1||d===this.pin2Dx01){a=this.imageView.fixX(a);d.setX(this.imageView.toX0(a),a);if(d===this.pin2Dx01){d=
a-x((this.pin2Dx0.xPixel0+this.pin2Dx1.xPixel0)/2)+1;a=this.pin2Dx0.xPixel0+d;b=this.pin2Dx1.xPixel0+d;if(this.imageView.fixX(a)!=a||this.imageView.fixX(b)!=b)return!0;this.pin2Dx0.setX(this.imageView.toX0(a),a);this.pin2Dx1.setX(this.imageView.toX0(b),b)}if(!JSV.common.GraphSet.isGoodEvent(this.pin2Dx0,this.pin2Dx1,!0))return this.reset2D(!0),!0;this.imageView.setView0(this.pin2Dx0.xPixel0,this.pin2Dy0.yPixel0,this.pin2Dx1.xPixel0,this.pin2Dy1.yPixel0);this.doZoom(this.pin2Dx0.getXVal(),this.getScale().minY,
this.pin2Dx1.getXVal(),this.getScale().maxY,!1,!1,!1,!0,!1);return!0}if(d===this.pin2Dy0||d===this.pin2Dy1||d===this.pin2Dy01){b=this.fixY(b);d.setY(this.imageView.toSubspectrumIndex(b),b);if(d===this.pin2Dy01){d=b-x((this.pin2Dy0.yPixel0+this.pin2Dy1.yPixel0)/2)+1;b=this.pin2Dy0.yPixel0+d;a=this.pin2Dy1.yPixel0+d;if(b!=this.fixY(b)||a!=this.fixY(a))return!0;this.pin2Dy0.setY(this.imageView.toSubspectrumIndex(b),b);this.pin2Dy1.setY(this.imageView.toSubspectrumIndex(a),a)}if(!JSV.common.GraphSet.isGoodEvent(this.pin2Dy0,
this.pin2Dy1,!1))return this.reset2D(!1),!0;this.imageView.setView0(this.pin2Dx0.xPixel0,this.pin2Dy0.yPixel0,this.pin2Dx1.xPixel1,this.pin2Dy1.yPixel1);return!0}return!1},"~N,~N,~B");c(c$,"clearIntegrals",function(){this.checkIntegral(NaN,0,!1)});c(c$,"clearMeasurements",function(){this.removeDialog(this.getFixedSelectedSpectrumIndex(),JSV.common.Annotation.AType.Measurements)});c$.createGraphSetsAndSetLinkMode=c(c$,"createGraphSetsAndSetLinkMode",function(a,b,d,c,f,e){for(var r=new JU.Lst,j=0;j<
d.size();j++){var l=d.get(j),p=e===JSV.common.PanelData.LinkMode.NONE?JSV.common.GraphSet.findCompatibleGraphSet(r,l):null;null==p&&r.addLast(p=new JSV.common.GraphSet(b.getPanelData()));p.addSpec(l)}JSV.common.GraphSet.setFractionalPositions(a,r,e);for(j=r.size();0<=--j;)r.get(j).initGraphSet(c,f),JU.Logger.info("JSVGraphSet "+(j+1)+" nSpectra = "+r.get(j).nSpectra);return r},"JSV.common.PanelData,JSV.api.JSVPanel,JU.Lst,~N,~N,JSV.common.PanelData.LinkMode");c(c$,"drawGraphSet",function(a,b,d,c,
f,e,r,j,l,p,k,m){this.zoomEnabled=this.pd.getBoolean(JSV.common.ScriptToken.ENABLEZOOM);this.height=f*this.pd.scalingFactor;this.width=c*this.pd.scalingFactor;this.left=e*this.pd.scalingFactor;this.right=r*this.pd.scalingFactor;this.top=j*this.pd.scalingFactor;this.bottom=l*this.pd.scalingFactor;this.$haveSelectedSpectrum=!1;this.selectedSpectrumMeasurements=this.selectedSpectrumIntegrals=null;if(!this.pd.isPrinting&&null!=this.widgets)for(c=0;c<this.widgets.length;c++)null!=this.widgets[c]&&(this.widgets[c].isVisible=
!1);for(c=0;c<this.nSplit;c++)this.setPositionForFrame(c),this.drawAll(a,b,d,c,p||1<this.nSplit,k,m);this.setPositionForFrame(1<this.nSplit?this.pd.currentSplitPoint:0)},"~O,~O,~O,~N,~N,~N,~N,~N,~N,~B,~B,~B");c(c$,"escapeKeyPressed",function(a){null!=this.zoomBox1D&&(this.zoomBox1D.xPixel0=this.zoomBox1D.xPixel1=0);null!=this.zoomBox2D&&(this.zoomBox2D.xPixel0=this.zoomBox2D.xPixel1=0);this.inPlotMove&&(null!=this.pendingMeasurement?this.pendingMeasurement=null:(this.pendingMeasurement=this.pd.thisWidget=
null,null!=this.selectedSpectrumMeasurements&&null!=this.selectedMeasurement&&(a?this.selectedSpectrumMeasurements.clear(this.getScale().minXOnScale,this.getScale().maxXOnScale):this.selectedSpectrumMeasurements.removeObj(this.selectedMeasurement),this.selectedMeasurement=null,this.updateDialog(JSV.common.Annotation.AType.Measurements,-1)),null!=this.selectedSpectrumIntegrals&&null!=this.selectedIntegral&&(a?this.selectedSpectrumIntegrals.clear(this.getScale().minXOnScale,this.getScale().maxXOnScale):
this.selectedSpectrumIntegrals.removeObj(this.selectedIntegral),this.selectedIntegral=null,this.updateDialog(JSV.common.Annotation.AType.Integration,-1))))},"~B");c$.findGraphSet=c(c$,"findGraphSet",function(a,b,d){for(var c=a.size();0<=--c;)if(a.get(c).hasPoint(b,d))return a.get(c);return null},"JU.Lst,~N,~N");c(c$,"findMatchingPeakInfo",function(a){for(var b=null,d=0;d<this.spectra.size()&&null==(b=this.spectra.get(d).findMatchingPeakInfo(a));d++);return b},"JSV.common.PeakInfo");c(c$,"getCurrentSpectrumIndex",
function(){return 1==this.nSpectra?0:this.iSpectrumSelected});c(c$,"getSelectedIntegral",function(){return this.selectedIntegral});c(c$,"getShowAnnotation",function(a,b){var d=this.getDialog(a,b);return null!=d&&d.getState()},"JSV.common.Annotation.AType,~N");c(c$,"hasFileLoaded",function(a){for(var b=this.spectra.size();0<=--b;)if(this.spectra.get(b).getFilePathForwardSlash().equals(a))return!0;return!1},"~S");c(c$,"haveSelectedSpectrum",function(){return this.$haveSelectedSpectrum});c(c$,"mouseClickedEvent",
function(a,b,d,c){this.selectedIntegral=this.selectedMeasurement=null;var f=this.nextClickForSetPeak;this.nextClickForSetPeak=null;if(!this.checkArrowUpDownClick(a,b)&&!this.checkArrowLeftRightClick(a,b))if(this.lastClickX=NaN,this.lastPixelX=2147483647,this.isSplitWidget(a,b))this.splitStack(1==this.nSplit);else if(this.isCloserWidget(a,b))this.pd.closeSpectrum();else{var e=this.getPinSelected(a,b);if(null!=e)this.setWidgetValueByUser(e);else if(e=this.is2dClick(a,b),2==d&&(-1==this.iSpectrumClicked&&
0<=this.iPreviousSpectrumClicked)&&this.setSpectrumClicked(this.iPreviousSpectrumClicked),!e&&c)this.setSpectrumClicked(this.iPreviousSpectrumClicked),null!=this.pendingMeasurement?this.processPendingMeasurement(a,b,-3):0<=this.iSpectrumClicked&&this.processPendingMeasurement(a,b,3);else if(this.lastXMax=NaN,2==d)e?(this.sticky2Dcursor&&this.addAnnotation(this.getAnnotation(this.imageView.toX(a),this.imageView.toSubspectrumIndex(b),this.pd.coordStr,!1,!0,5,5),!0),this.sticky2Dcursor=!0,this.set2DCrossHairs(a,
b)):this.isInTopBar(a,b)?this.doZoom(this.toX0(this.xPixel0),0,this.toX0(this.xPixel1),0,!0,!1,!1,!0,!0):this.isInRightBar(a,b)?this.doZoom(this.getScale().minXOnScale,this.viewList.get(0).getScale().minYOnScale,this.getScale().maxXOnScale,this.viewList.get(0).getScale().maxYOnScale,!0,!0,!1,!1,!1):this.isInTopBar2D(a,b)?this.reset2D(!0):this.isInRightBar2D(a,b)?this.reset2D(!1):null!=this.pendingMeasurement?this.processPendingMeasurement(a,b,-2):0<=this.iSpectrumClicked&&this.processPendingMeasurement(a,
b,2);else if(e){if(null!=this.annotations&&(c=(new JSV.common.Coordinate).set(this.imageView.toX(a),this.imageView.toSubspectrumIndex(b)),c=this.findAnnotation2D(c),null!=c&&this.setAnnotationText(c)))return;1==d&&(this.sticky2Dcursor=!1);this.set2DCrossHairs(a,b)}else{if(this.isInPlotRegion(a,b)){if(null!=this.selectedSpectrumIntegrals&&this.checkIntegralNormalizationClick(a,b))return;if(null!=this.pendingMeasurement){this.processPendingMeasurement(a,b,1);return}this.setCoordClicked(a,this.toX(a),
this.toY(b));this.updateDialog(JSV.common.Annotation.AType.PeakList,-1);if(null!=f){this.nextClickForSetPeak=f;this.shiftSpectrum(4,NaN,NaN);this.nextClickForSetPeak=null;return}}else this.setCoordClicked(0,NaN,0);this.pd.notifyPeakPickedListeners(null)}}},"~N,~N,~N,~B");c(c$,"is2dClick",function(a,b){return null!=this.imageView&&a==this.imageView.fixX(a)&&b==this.fixY(b)},"~N,~N");c(c$,"updateDialog",function(a,b){var d=this.getDialog(a,b);if(null!=d&&this.isVisible(d)){var c=this.toX(this.xPixel1)-
this.toX(this.xPixel0),f=this.getSpectrum().isInverted()?this.yPixel1-this.pd.mouseY:this.pd.mouseY-this.yPixel0;d.update(this.pd.coordClicked,c,f)}},"JSV.common.Annotation.AType,~N");c(c$,"isVisible",function(a){return null!=a&&a.isDialog()&&a.isVisible()},"JSV.api.AnnotationData");c(c$,"mousePressedEvent",function(a,b){this.checkWidgetEvent(a,b,!0)},"~N,~N,~N");c(c$,"mouseReleasedEvent",function(a,b){if(null!=this.pendingMeasurement)2>Math.abs(this.toPixelX(this.pendingMeasurement.getXVal())-a)&&
(this.pendingMeasurement=null),this.processPendingMeasurement(a,b,-2),this.setToolTipForPixels(a,b);else if(0!=this.pd.integralShiftMode)this.pd.integralShiftMode=0,this.zoomBox1D.xPixel1=this.zoomBox1D.xPixel0;else{0<=this.iSpectrumMovedTo&&this.setScale(this.iSpectrumMovedTo);var d=this.pd.thisWidget;if(this.pd.isIntegralDrag)JSV.common.GraphSet.isGoodEvent(this.zoomBox1D,null,!0)&&this.checkIntegral(this.toX(this.zoomBox1D.xPixel0),this.toX(this.zoomBox1D.xPixel1),!0),this.zoomBox1D.xPixel1=this.zoomBox1D.xPixel0=
0,this.pendingIntegral=null,this.pd.isIntegralDrag=!1;else if(d===this.zoomBox2D)JSV.common.GraphSet.isGoodEvent(this.zoomBox2D,null,!0)&&(this.imageView.setZoom(this.zoomBox2D.xPixel0,this.zoomBox2D.yPixel0,this.zoomBox2D.xPixel1,this.zoomBox2D.yPixel1),this.zoomBox2D.xPixel1=this.zoomBox2D.xPixel0,this.doZoom(this.imageView.toX(this.imageView.xPixel0),this.getScale().minY,this.imageView.toX(this.imageView.xPixel0+this.imageView.xPixels-1),this.getScale().maxY,!1,!1,!1,!0,!0));else if(d===this.zoomBox1D){if(JSV.common.GraphSet.isGoodEvent(this.zoomBox1D,
null,!0)){var d=this.zoomBox1D.xPixel1,c=this.pd.shiftPressed;this.doZoom(this.toX(this.zoomBox1D.xPixel0),c?this.toY(this.zoomBox1D.yPixel0):0,this.toX(d),c?this.toY(this.zoomBox1D.yPixel1):0,!0,c,!0,!0,!0);this.zoomBox1D.xPixel1=this.zoomBox1D.xPixel0}}else(d===this.pin1Dx0||d===this.pin1Dx1||d===this.cur2Dx0||d===this.cur2Dx1)&&this.addCurrentZoom()}},"~N,~N");c(c$,"mouseMovedEvent",function(a,b){if(1<this.nSpectra){var d=this.getSplitPoint(b);this.setPositionForFrame(d);this.setSpectrumMovedTo(1<
this.nSplit?d:this.iSpectrumSelected);0<=this.iSpectrumMovedTo&&this.setScale(this.iSpectrumMovedTo)}this.inPlotMove=this.isInPlotRegion(a,b);this.setXPixelMovedTo(1.7976931348623157E308,1.7976931348623157E308,this.inPlotMove?a:-1,-1);this.inPlotMove&&(this.xValueMovedTo=this.toX(this.xPixelMovedTo),this.yValueMovedTo=this.getSpectrum().getYValueAt(this.xValueMovedTo));if(0!=this.pd.integralShiftMode){var d=this.getDialog(JSV.common.Annotation.AType.Integration,-1),c=d.getData().getXYCoords(),c=c[0<
this.pd.integralShiftMode?c.length-1:0].getYVal();d.getData().shiftY(this.pd.integralShiftMode,this.toPixelYint(c)+b-(0<this.pd.integralShiftMode?this.yPixelPlot1:this.yPixelPlot0),this.yPixel0,this.yPixels)}else this.pd.isIntegralDrag||(null!=this.pendingMeasurement?(this.processPendingMeasurement(a,b,0),this.setToolTipForPixels(a,b)):(this.selectedMeasurement=this.inPlotMove&&null!=this.selectedSpectrumMeasurements?this.findMeasurement(this.selectedSpectrumMeasurements,a,b,0):null,this.selectedIntegral=
null,this.inPlotMove&&(null!=this.selectedSpectrumIntegrals&&null==this.selectedMeasurement)&&(this.selectedIntegral=this.findMeasurement(this.selectedSpectrumIntegrals,a,b,0),null==this.selectedIntegral&&(this.selectedIntegral=this.findMeasurement(this.selectedSpectrumIntegrals,a,b,-5))),this.setToolTipForPixels(a,b),null==this.imageView?(this.piMouseOver=null,d=1<this.nSplit?this.iSpectrumMovedTo:this.iSpectrumClicked,!this.isDrawNoSpectra()&&0<=d&&(d=this.spectra.get(d),null!=d.getPeakList()&&
(this.coordTemp.setXVal(this.toX(a)),this.coordTemp.setYVal(this.toY(b)),this.piMouseOver=d.findPeakByCoord(a,this.coordTemp)))):!this.pd.display1D&&this.sticky2Dcursor&&this.set2DCrossHairs(a,b)))},"~N,~N");c(c$,"nextView",function(){this.currentZoomIndex+1<this.viewList.size()&&this.setZoomTo(this.currentZoomIndex+1)});c(c$,"previousView",function(){0<this.currentZoomIndex&&this.setZoomTo(this.currentZoomIndex-1)});c(c$,"resetView",function(){this.setZoomTo(0)});c(c$,"removeAllHighlights",function(){this.removeAllHighlights(null)});
c(c$,"removeHighlight",function(a){this.highlights.removeItemAt(a)},"~N");c(c$,"removeHighlight",function(a,b){for(var d=this.highlights.size();0<=--d;){var c=this.highlights.get(d);c.x1==a&&c.x2==b&&this.highlights.removeItemAt(d)}},"~N,~N");c(c$,"scaleYBy",function(a){if(null!=this.imageView||this.zoomEnabled)this.viewData.scaleSpectrum(null==this.imageView?this.iSpectrumSelected:-2,a),null!=this.imageView&&(this.update2dImage(!1),this.resetPinsFromView()),this.pd.refresh()},"~N");c(c$,"selectSpectrum",
function(a,b,d){for(var c=!1,f=this.spectra.size();0<=--f;)if((null==a||this.getSpectrumAt(f).getFilePathForwardSlash().equals(a))&&this.getSpectrumAt(f).matchesPeakTypeModel(b,d))this.setSpectrumSelected(f),1<this.nSplit&&this.splitStack(!0),c=!0;1<this.nSpectra&&(!c&&0<=this.iSpectrumSelected&&!this.pd.isCurrentGraphSet(this))&&this.setSpectrumSelected(-2147483648);return c},"~S,~S,~S");c(c$,"selectPeakByFileIndex",function(a,b,d){for(var c,f=this.spectra.size();0<=--f;)if(null!=(c=this.getSpectrumAt(f).selectPeakByFileIndex(a,
b,d)))return c;return null},"~S,~S,~S");c(c$,"setSelected",function(a){0>a?(this.bsSelected.clearAll(),this.setSpectrumClicked(-1)):(this.bsSelected.set(a),this.setSpectrumClicked(1==this.bsSelected.cardinality()?a:-1),1<this.nSplit&&0<=a&&(this.pd.currentSplitPoint=a))},"~N");c(c$,"setSelectedIntegral",function(a){var b=this.selectedIntegral.getSpectrum();this.getIntegrationGraph(this.getSpectrumIndex(b)).setSelectedIntegral(this.selectedIntegral,a)},"~N");c(c$,"setShowAnnotation",function(a,b){var d=
this.getDialog(a,-1);if(null==d)null!=b&&b!==Boolean.TRUE||(a===JSV.common.Annotation.AType.PeakList||a===JSV.common.Annotation.AType.Integration||a===JSV.common.Annotation.AType.Measurements)&&this.pd.showDialog(a);else if(null==b)d.isDialog()?d.setVisible(!d.isVisible()):this.pd.showDialog(a);else{var c=b.booleanValue();c&&d.setState(c);(c||d.isDialog())&&this.pd.showDialog(a);!c&&d.isDialog()&&d.setVisible(!1)}},"JSV.common.Annotation.AType,Boolean");c(c$,"checkIntegralParams",function(a,b){if(!this.getSpectrum().canIntegrate()||
this.reversePlot)return!1;var d=this.getFixedSelectedSpectrumIndex(),c=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==b)return!0;switch(JSV.common.IntegralData.IntMode.getMode(b.toUpperCase())){case JSV.common.IntegralData.IntMode.NA:return!1;case JSV.common.IntegralData.IntMode.CLEAR:this.integrate(d,null);this.integrate(d,a);break;case JSV.common.IntegralData.IntMode.ON:null==c?this.integrate(d,a):c.setState(!0);break;case JSV.common.IntegralData.IntMode.OFF:null!=c&&c.setState(!1);
break;case JSV.common.IntegralData.IntMode.TOGGLE:null==c?this.integrate(d,a):c.setState(!c.getState());break;case JSV.common.IntegralData.IntMode.AUTO:null==c&&(this.checkIntegralParams(a,"ON"),c=this.getDialog(JSV.common.Annotation.AType.Integration,-1));null!=c&&c.getData().autoIntegrate();break;case JSV.common.IntegralData.IntMode.LIST:this.pd.showDialog(JSV.common.Annotation.AType.Integration);break;case JSV.common.IntegralData.IntMode.MARK:null==c&&(this.checkIntegralParams(a,"ON"),c=this.getDialog(JSV.common.Annotation.AType.Integration,
-1));null!=c&&c.getData().addMarks(b.substring(4).trim());break;case JSV.common.IntegralData.IntMode.MIN:if(null!=c)try{var f=Double.parseDouble(JSV.common.ScriptToken.getTokens(b).get(1));c.getData().setMinimumIntegral(f)}catch(e){if(!y(e,Exception))throw e;}break;case JSV.common.IntegralData.IntMode.UPDATE:null!=c&&c.getData().update(a)}this.updateDialog(JSV.common.Annotation.AType.Integration,-1);return!0},"JSV.common.Parameters,~S");c(c$,"setSpectrum",function(a,b){b&&1<this.nSplit?1<this.nSplit&&
this.setSpectrumClicked(a):(this.setSpectrumClicked(a),this.showAllStacked=this.stackSelected=!1);0<=a&&this.dialogsToFront(this.getSpectrum())},"~N,~B");c(c$,"setSpectrumJDX",function(a){var b=this.getFixedSelectedSpectrumIndex();this.spectra.removeItemAt(b);this.spectra.add(b,a);this.pendingMeasurement=null;this.clearViews();this.viewData.newSpectrum(this.spectra)},"JSV.common.Spectrum");c(c$,"setZoom",function(a,b,d,c){this.setZoomTo(0);0==a&&0==d&&0==b&&0==c?(this.newPins(),this.imageView=null,
this.getScale(),this.getScale()):this.doZoom(a,b,d,c,!0,b!=c,!1,!0,!0)},"~N,~N,~N,~N");c(c$,"shiftSpectrum",function(a,b,d){var c=this.getSpectrum();if(!c.isNMR()||!c.is1D())return!1;var f=null,f=0;if(1.7976931348623157E308==d)f=-c.addSpecShift(0);else switch(a){case 3:f=d;break;case 1:case 2:this.nextClickMode=a;if(Double.isNaN(b))return f=this.pd.getInput("Click on "+(1==a?"or beside a peak to set its chemical shift":"the spectrum set the chemical shift at that point")+(-2147483648==d?"":" to "+
d)+".","Set Reference "+(1==a?"for Peak":"at Point"),"OK"),this.nextClickForSetPeak="OK".equals(f)?Double.$valueOf(d):null,!1;this.nextClickForSetPeak=null;case 4:null!=this.nextClickForSetPeak&&(d=this.nextClickForSetPeak.doubleValue(),this.nextClickForSetPeak=null);Double.isNaN(b)&&(b=this.lastClickX);1==this.nextClickMode&&(b=this.getNearestPeak(c,b,this.toY(this.pd.mouseY)));if(Double.isNaN(d))try{var e=this.pd.getInput("New chemical shift (set blank to reset)","Set Reference",JU.DF.formatDecimalDbl(b,
this.getScale().precision[0])).trim();d=0==e.length?b-c.addSpecShift(0):Double.parseDouble(e)}catch(r){if(y(r,Exception))return!1;throw r;}f=d-b}if(0==f)return!1;c.addSpecShift(f);if(null!=this.annotations)for(a=this.annotations.size();0<=--a;)this.annotations.get(a).spec===c&&this.annotations.get(a).addSpecShift(f);if(null!=this.dialogs){var j;for(a=this.dialogs.entrySet().iterator();a.hasNext()&&((j=a.next())||1);)j.getValue().getSpectrum()===c&&j.getValue().setSpecShift(f)}this.getScale().addSpecShift(f);
Double.isNaN(this.lastClickX)||(this.lastClickX+=f);this.updateDialogs();this.doZoom(0,this.getScale().minYOnScale,0,this.getScale().maxYOnScale,!0,!0,!1,!0,!1);this.pd.setTaintedAll();this.pd.repaint();return!0},"~N,~N,~N");c(c$,"toPeak",function(a){a*=this.drawXAxisLeftToRight?1:-1;Double.isNaN(this.lastClickX)&&(this.lastClickX=this.lastPixelX=0);var b=this.getSpectrum(),d=this.setCoordClicked(this.lastPixelX,this.lastClickX,0);a=b.setNextPeak(d,a);0>a||(a=b.getPeakList().get(a),b.setSelectedPeak(a),
this.setCoordClicked(a.getXPixel(),a.getX(),0),this.pd.notifyPeakPickedListeners(new JSV.common.PeakPickEvent(this.jsvp,this.pd.coordClicked,a)))},"~N");c(c$,"scaleSelectedBy",function(a){for(var b=this.bsSelected.nextSetBit(0);0<=b;b=this.bsSelected.nextSetBit(b+1))this.viewData.scaleSpectrum(b,a)},"~N");e(c$,"toString",function(){return"gs: "+this.nSpectra+" "+this.spectra+" "+this.spectra.get(0).getFilePath()});c(c$,"setXPointer",function(a,b){null!=a&&this.setSpectrumClicked(this.getSpectrumIndex(a));
this.xValueMovedTo=this.lastClickX=b;this.lastPixelX=this.toPixelX(b);this.setXPixelMovedTo(b,1.7976931348623157E308,0,0);this.yValueMovedTo=NaN},"JSV.common.Spectrum,~N");c(c$,"setXPointer2",function(a,b){null!=a&&this.setSpectrumClicked(this.getSpectrumIndex(a));this.setXPixelMovedTo(1.7976931348623157E308,b,0,0)},"JSV.common.Spectrum,~N");c(c$,"hasCurrentMeasurement",function(a){return null!=(a===JSV.common.Annotation.AType.Integration?this.selectedSpectrumIntegrals:this.selectedSpectrumMeasurements)},
"JSV.common.Annotation.AType");c(c$,"getDialog",function(a,b){-1==b&&(b=this.getCurrentSpectrumIndex());return null==this.dialogs||0>b?null:this.dialogs.get(a+"_"+b)},"JSV.common.Annotation.AType,~N");c(c$,"removeDialog",function(a,b){null!=this.dialogs&&0<=a&&this.dialogs.remove(b+"_"+a)},"~N,JSV.common.Annotation.AType");c(c$,"addDialog",function(a,b,d){null==this.dialogs&&(this.dialogs=new java.util.Hashtable);a=b+"_"+a;d.setGraphSetKey(a);this.dialogs.put(a,d);return d},"~N,JSV.common.Annotation.AType,JSV.api.AnnotationData");
c(c$,"removeDialog",function(a){var b=a.getGraphSetKey();this.dialogs.remove(b);a=a.getData();null!=a&&this.dialogs.put(b,a)},"JSV.dialog.JSVDialog");c(c$,"getPeakListing",function(a,b,d){0>a&&(a=this.getCurrentSpectrumIndex());if(0>a)return null;var c=this.getDialog(JSV.common.Annotation.AType.PeakList,-1);if(null==c){if(!d)return null;this.addDialog(a,JSV.common.Annotation.AType.PeakList,c=new JSV.common.PeakData(JSV.common.Annotation.AType.PeakList,this.getSpectrum()))}c.getData().setPeakList(b,
-2147483648,this.viewData.getScale());c.isDialog()&&c.setFields();return c.getData()},"~N,JSV.common.Parameters,~B");c(c$,"setPeakListing",function(a){var b=this.getDialog(JSV.common.Annotation.AType.PeakList,-1),d=null!=b&&b.isDialog()?b:null;(null==a?null==d||!d.isVisible():a.booleanValue())?this.pd.showDialog(JSV.common.Annotation.AType.PeakList):b.isDialog()&&b.setVisible(!1)},"Boolean");c(c$,"haveIntegralDisplayed",function(a){a=this.getDialog(JSV.common.Annotation.AType.Integration,a);return null!=
a&&a.getState()},"~N");c(c$,"getIntegrationGraph",function(a){a=this.getDialog(JSV.common.Annotation.AType.Integration,a);return null==a?null:a.getData()},"~N");c(c$,"setIntegrationRatios",function(a){var b=this.getFixedSelectedSpectrumIndex();null==this.aIntegrationRatios&&(this.aIntegrationRatios=Array(this.nSpectra));this.aIntegrationRatios[b]=JSV.common.IntegralData.getIntegrationRatiosFromString(this.getSpectrum(),a)},"~S");c(c$,"getIntegrationRatios",function(a){return null==this.aIntegrationRatios?
null:this.aIntegrationRatios[a]},"~N");c(c$,"integrate",function(a,b){var d=this.getSpectrumAt(a);if(null==b||!d.canIntegrate())return this.removeDialog(a,JSV.common.Annotation.AType.Integration),!1;this.addDialog(a,JSV.common.Annotation.AType.Integration,new JSV.common.IntegralData(d,b));return!0},"~N,JSV.common.Parameters");c(c$,"getIntegration",function(a,b,d){0>a&&(a=this.getCurrentSpectrumIndex());if(0>a)return null;var c=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==c){if(!d)return null;
c=this.addDialog(a,JSV.common.Annotation.AType.Integration,new JSV.common.IntegralData(this.getSpectrum(),b))}return c.getData()},"~N,JSV.common.Parameters,~B");c(c$,"getMeasurementInfo",function(a,b){var d;switch(a){case JSV.common.Annotation.AType.PeakList:d=this.getPeakListing(b,null,!1);break;case JSV.common.Annotation.AType.Integration:d=this.getIntegration(b,null,!1);break;default:return null}if(null==d)return null;var c=new java.util.Hashtable;d.getInfo(c);return c},"JSV.common.Annotation.AType,~N");
c(c$,"getInfo",function(a,b){var d=new java.util.Hashtable;if("".equals(a))d.put("KEYS","viewInfo spectra");else if("viewInfo".equalsIgnoreCase(a))return this.getScale().getInfo(d);var c=new JU.Lst;d.put("spectra",c);for(var f=0;f<this.nSpectra;f++)if(!(0<=b&&f!=b)){var e=this.spectra.get(f),r=e.getInfo(a);if(0<=b&&null!=a&&(2==r.size()||a.equalsIgnoreCase("id")))return 2==r.size()&&r.remove("id"),r;JSV.common.Parameters.putInfo(a,r,"type",e.getDataType());JSV.common.Parameters.putInfo(a,r,"titleLabel",
e.getTitleLabel());JSV.common.Parameters.putInfo(a,r,"filePath",e.getFilePath().$replace("\\","/"));JSV.common.Parameters.putInfo(a,r,"PeakList",JSV.common.Parameters.isMatch(a,"PeakList")?this.getMeasurementInfo(JSV.common.Annotation.AType.PeakList,f):null);JSV.common.Parameters.putInfo(a,r,"Integration",JSV.common.Parameters.isMatch(a,"Integration")?this.getMeasurementInfo(JSV.common.Annotation.AType.Integration,f):null);if(0<=b)return r;c.addLast(r)}return d},"~S,~N");c(c$,"getTitle",function(a){return 1==
this.nSpectra||0<=this.iSpectrumSelected&&(!a||1==this.nSplit)?this.getSpectrum().getTitle():null},"~B");c(c$,"getCurrentView",function(){this.setScale(this.getFixedSelectedSpectrumIndex());return this.viewData.getScale()});c(c$,"set2DXY",function(a,b,d){var c;null!=this.gs2dLinkedX&&(c=this.toPixelX(a),c!=this.fixX(c)&&(c=-2147483648,a=1.7976931348623157E308),this.cur1D2x1.setX(a,c));null!=this.gs2dLinkedY&&(c=this.toPixelX(b),c!=this.fixX(c)&&(c=-2147483648,b=1.7976931348623157E308),this.cur1D2x2.setX(b,
c));this.cur1D2Locked=d},"~N,~N,~B");c(c$,"dialogsToFront",function(a){if(null!=this.dialogs){null==a&&(a=this.getSpectrum());for(var b,d=this.dialogs.entrySet().iterator();d.hasNext()&&((b=d.next())||1);){var c=b.getValue();this.isVisible(c)&&(null==a?c.setVisible(!0):c.setFocus(c.getSpectrum()===a))}}},"JSV.common.Spectrum");c(c$,"setPlotColors",function(a){var b=a;if(b.length>this.nSpectra)a=Array(this.nSpectra),System.arraycopy(b,0,a,0,this.nSpectra),b=a;else if(this.nSpectra>b.length){a=Array(this.nSpectra);
var d=this.nSpectra-b.length;System.arraycopy(b,0,a,0,b.length);for(var c=0,b=b.length;c<d;c++,b++)a[b]=this.generateRandomColor();b=a}this.plotColors=b},"~O");c(c$,"disposeImage",function(){null!=this.image2D&&this.image2D.parentNode.removeChild(this.image2D);this.plotColors=this.highlights=this.pd=this.jsvp=this.image2D=null});c(c$,"generateRandomColor",function(){for(;;){var a=x(255*Math.random()),b=x(255*Math.random()),d=x(255*Math.random()),a=this.g2d.getColor3(a,b,d);if(0!=a.getRGB())return a}});
c(c$,"setPlotColor0",function(a){this.plotColors[0]=a},"~O");c(c$,"getPlotColor",function(a){return a>=this.plotColors.length?null:this.plotColors[a]},"~N");c(c$,"setColorFromToken",function(a,b){null!=b&&this.g2d.setGraphicsColor(a,b===JSV.common.ScriptToken.PLOTCOLOR?this.plotColors[0]:this.pd.getColor(b))},"~O,JSV.common.ScriptToken");c(c$,"setPlotColor",function(a,b){var d;switch(b){case -3:d=JSV.common.GraphSet.veryLightGrey;break;case -2:d=this.pd.BLACK;break;case -1:d=this.pd.getColor(JSV.common.ScriptToken.INTEGRALPLOTCOLOR);
break;default:d=this.plotColors[b]}this.g2d.setGraphicsColor(a,d)},"~O,~N");c(c$,"draw2DImage",function(){null!=this.imageView&&this.g2d.drawGrayScaleImage(this.gMain,this.image2D,this.imageView.xPixel0,this.imageView.yPixel0,this.imageView.xPixel0+this.imageView.xPixels-1,this.imageView.yPixel0+this.imageView.yPixels-1,this.imageView.xView1,this.imageView.yView1,this.imageView.xView2,this.imageView.yView2)});c(c$,"get2DImage",function(){this.imageView=new JSV.common.ImageView;this.imageView.set(this.viewList.get(0).getScale());
if(!this.update2dImage(!0))return!1;this.imageView.resetZoom();return this.sticky2Dcursor=!0},"JSV.common.Spectrum");c(c$,"update2dImage",function(a){this.imageView.set(this.viewData.getScale());var b=this.getSpectrumAt(0),d=this.imageView.get2dBuffer(b,!a);if(null==d)return this.imageView=this.image2D=null,!1;a&&(d=this.imageView.adjustView(b,this.viewData),this.imageView.resetView());this.image2D=this.g2d.newGrayScaleImage(this.gMain,this.image2D,this.imageView.imageWidth,this.imageView.imageHeight,
d);this.setImageWindow();return!0},"~B");c(c$,"getAnnotation",function(a,b,d,c,f,e,r){return(new JSV.common.ColoredAnnotation).setCA(a,b,this.getSpectrum(),d,this.pd.BLACK,c,f,e,r)},"~N,~N,~S,~B,~B,~N,~N");c(c$,"getAnnotation",function(a,b){return JSV.common.Annotation.getColoredAnnotation(this.g2d,this.getSpectrum(),a,b)},"JU.Lst,JSV.common.Annotation");c(c$,"fillBox",function(a,b,d,c,f,e){this.setColorFromToken(a,e);this.g2d.fillRect(a,Math.min(b,c),Math.min(d,f),Math.abs(b-c),Math.abs(d-f))},"~O,~N,~N,~N,~N,JSV.common.ScriptToken");
c(c$,"drawBox",function(a,b,d,c,f,e){this.setColorFromToken(a,e);this.g2d.drawRect(a,Math.min(b,c),Math.min(d,f),Math.abs(b-c)-1,Math.abs(d-f)-1)},"~O,~N,~N,~N,~N,JSV.common.ScriptToken");c(c$,"drawHandle",function(a,b,d,c,f){f?this.g2d.drawRect(a,b-c,d-c,2*c,2*c):this.g2d.fillRect(a,b-c,d-c,2*c+1,2*c+1)},"~O,~N,~N,~N,~B");c(c$,"setCurrentBoxColor",function(a){this.g2d.setGraphicsColor(a,this.pd.BLACK)},"~O");c(c$,"fillArrow",function(a,b,c,g,f){var e=1;switch(b){case 1:case 3:e=-1}c=E(-1,[c-5,c-
5,c+5,c+5,c+8,c,c-8]);g=E(-1,[g+5*e,g-e,g-e,g+5*e,g+5*e,g+10*e,g+5*e]);switch(b){case 1:case 2:f?this.g2d.fillPolygon(a,g,c,7):this.g2d.drawPolygon(a,g,c,7);break;case 3:case 4:f?this.g2d.fillPolygon(a,c,g,7):this.g2d.drawPolygon(a,c,g,7)}},"~O,~N,~N,~N,~B");c(c$,"fillCircle",function(a,b,c,g){g?this.g2d.fillCircle(a,b-4,c-4,8):this.g2d.drawCircle(a,b-4,c-4,8)},"~O,~N,~N,~B");c(c$,"setAnnotationColor",function(a,b,c){null!=c?this.setColorFromToken(a,c):(c=null,v(b,JSV.common.ColoredAnnotation)&&(c=
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1,"SHIFT_SETX",2,"SHIFT_X",3,"SHIFT_CLICKED",4)});s("JSV.common");t(["JSV.common.XYScaleConverter"],"JSV.common.ImageView",["java.lang.Double","JSV.common.Coordinate","$.ScaleData"],function(){c$=k(function(){this.buf2d=null;this.yView2=this.xView2=this.yView1=this.xView1=this.yPixelZoom2=this.xPixelZoom2=this.yPixelZoom1=this.xPixelZoom1=this.yPixels=this.xPixels=this.imageHeight=this.imageWidth=this.yPixel1=this.xPixel1=this.yPixel0=this.xPixel0=this.averageGray=this.grayFactorLast=0;this.minX=
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t(["java.lang.Enum","JSV.common.MeasurementData","$.IntegralComparator"],"JSV.common.IntegralData","java.lang.Double java.util.Collections $.StringTokenizer JU.AU $.BS $.DF $.Lst $.PT JSV.common.Annotation $.Coordinate $.Integral $.ScriptToken".split(" "),function(){c$=k(function(){this.intRange=this.percentOffset=this.percentMinY=0;this.normalizationFactor=1;this.integralTotal=this.offset=this.percentRange=0;this.haveRegions=!1;this.xyCoords=null;m(this,arguments)},JSV.common,"IntegralData",JSV.common.MeasurementData);
c(c$,"getPercentMinimumY",function(){return this.percentMinY});c(c$,"getPercentOffset",function(){return this.percentOffset});c(c$,"getIntegralFactor",function(){return this.intRange});n(c$,function(a,b,c,g){z(this,JSV.common.IntegralData,[JSV.common.Annotation.AType.Integration,g]);this.percentMinY=a;this.percentOffset=b;this.percentRange=c;this.calculateIntegral()},"~N,~N,~N,JSV.common.Spectrum");n(c$,function(a,b){z(this,JSV.common.IntegralData,[JSV.common.Annotation.AType.Integration,a]);null==
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function(){var a=this.spec.getXYCoords();this.xyCoords=Array(a.length);this.integralTotal=0;this.checkRange();for(var b=1E100,c=0;c<a.length;c++){var g=a[c].getYVal();g<b&&0<=g&&(b=g)}for(var f=1E100,e=-1E100,c=0;c<a.length;c++)g=a[c].getYVal(),this.integralTotal+=g-b,this.integralTotal<f&&(f=this.integralTotal),this.integralTotal>e&&(e=this.integralTotal);this.integralTotal=e-f;this.intRange=this.percentRange/100/this.integralTotal;this.offset=this.percentOffset/100;f=0;for(c=a.length;0<=--c;)g=
a[c].getYVal(),f+=g-b,this.xyCoords[c]=(new JSV.common.Coordinate).set(a[c].getXVal(),f*this.intRange+this.offset);return this.xyCoords});c(c$,"checkRange",function(){this.percentOffset=Math.max(5,this.percentOffset);this.percentRange=Math.max(10,this.percentRange)});c$.getIntegrationRatiosFromString=c(c$,"getIntegrationRatiosFromString",function(a,b){for(var c=new JU.Lst,g=new java.util.StringTokenizer(b,",");g.hasMoreTokens();){var f=g.nextToken(),f=new java.util.StringTokenizer(f,":"),f=(new JSV.common.Annotation).setA(Double.parseDouble(f.nextToken()),
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g.setValue(a*g.getValue())}this.normalizationFactor=b?1:this.normalizationFactor*a},"~N,~B");c(c$,"remove",function(a){return this.removeItemAt(a)},"~N");c(c$,"getBitSet",function(){var a=JU.BS.newN(this.xyCoords.length);if(0==this.size())return a.setBits(0,this.xyCoords.length),a;for(var b=this.size();0<=--b;){var c=this.get(b),g=JSV.common.Coordinate.getNearestIndexForX(this.xyCoords,c.getXVal()),c=JSV.common.Coordinate.getNearestIndexForX(this.xyCoords,c.getXVal2());a.setBits(Math.min(g,c),Math.max(g,
c))}return a});e(c$,"getMeasurementListArray",function(){for(var a=Array(this.size()),b=0,c=this.size();0<=--c;)a[b++]=w(-1,[""+b,JU.DF.formatDecimalDbl(this.get(c).getXVal(),2),JU.DF.formatDecimalDbl(this.get(c).getXVal2(),2),this.get(c).text]);return a},"~S");e(c$,"getMeasurementListArrayReal",function(){for(var a=JU.AU.newDouble2(this.size()),b=0,c=this.size();0<=--c;b++)a[b]=L(-1,[this.get(c).getXVal(),this.get(c).getXVal2(),this.get(c).getValue()]);return a},"~S");e(c$,"getDataHeader",function(){return JSV.common.IntegralData.$HEADER});
c(c$,"shiftY",function(a,b,c,g){b=x(100*(c+g-b)/g);0>a&&(b-=this.percentOffset);0>a?this.update(0,this.percentOffset,b):this.update(0,b,this.percentRange)},"~N,~N,~N,~N");c(c$,"autoIntegrate",function(){null==this.xyCoords&&this.calculateIntegral();if(0!=this.xyCoords.length){this.clear();for(var a=-1,b=0,c=this.xyCoords[this.xyCoords.length-1].getYVal(),g=this.xyCoords.length-1;0<=--g;){var f=this.xyCoords[g].getYVal();b++;1E-4>f-c&&0>a?f<c&&(c=f,b=0):0>a?(a=g+Math.min(b,20),c=f,b=0):1E-4>f-c?(1==
b&&(c=f),20<=b&&(this.addIntegralRegion(this.xyCoords[a].getXVal(),this.xyCoords[g].getXVal()),a=-1,c=f,b=0)):(b=0,c=f)}0<this.spec.nH&&this.factorAllIntegrals(this.spec.nH/this.percentRange,!1)}});c(c$,"getInfo",function(a){a.put("offset",Double.$valueOf(this.myParams.integralOffset));a.put("range",Double.$valueOf(this.myParams.integralRange));a.put("normalizationFactor",Double.$valueOf(this.normalizationFactor));a.put("integralTotal",Double.$valueOf(this.integralTotal));M(this,JSV.common.IntegralData,
"getInfo",[a])},"java.util.Map");c(c$,"setMinimumIntegral",function(a){for(var b=this.size();0<=--b;)this.get(b).getValue()<a&&this.removeItemAt(b)},"~N");A(self.c$);c$=u(JSV.common.IntegralData,"IntMode",Enum);c$.getMode=c(c$,"getMode",function(a){for(var b,c=0,g=JSV.common.IntegralData.IntMode.values();c<g.length&&((b=g[c])||1);c++)if(a.startsWith(b.name()))return b;return JSV.common.IntegralData.IntMode.NA},"~S");q(c$,"OFF",0,[]);q(c$,"ON",1,[]);q(c$,"TOGGLE",2,[]);q(c$,"AUTO",3,[]);q(c$,"LIST",
4,[]);q(c$,"MARK",5,[]);q(c$,"MIN",6,[]);q(c$,"UPDATE",7,[]);q(c$,"CLEAR",8,[]);q(c$,"NA",9,[]);c$=B();D(c$,"DEFAULT_OFFSET",30,"DEFAULT_RANGE",50,"DEFAULT_MINY",0.1);c$.c=c$.prototype.c=new JSV.common.IntegralComparator;c$.$HEADER=c$.prototype.$HEADER=w(-1,["peak","start/ppm","end/ppm","value"])});s("JSV.common");t(["java.lang.Enum","JSV.source.JDXDataObject","JU.Lst"],"JSV.common.Spectrum","java.lang.Boolean $.Double java.util.Hashtable JU.PT JSV.common.Coordinate $.Parameters $.PeakInfo JSV.source.JDXSourceStreamTokenizer JU.Logger".split(" "),
function(){c$=k(function(){this.highlightedPeak=this.selectedPeak=this.piUnitsY=this.piUnitsX=this.peakList=this.subSpectra=null;this.currentSubSpectrumIndex=this.specShift=0;this.$isForcedSubset=!1;this.id="";this.convertedSpectrum=null;this.userYFactor=1;this.exportXAxisLeftToRight=!1;this.fillColor=null;m(this,arguments)},JSV.common,"Spectrum",JSV.source.JDXDataObject);F(c$,function(){this.peakList=new JU.Lst});e(c$,"finalize",function(){System.out.println("JDXSpectrum "+this+" finalized "+this.title)});
c(c$,"dispose",function(){});c(c$,"isForcedSubset",function(){return this.$isForcedSubset});c(c$,"setId",function(a){this.id=a},"~S");n(c$,function(){z(this,JSV.common.Spectrum,[]);this.headerTable=new JU.Lst;this.xyCoords=[];this.parent=this});c(c$,"copy",function(){var a=new JSV.common.Spectrum;this.copyTo(a);a.setPeakList(this.peakList,this.piUnitsX,null);a.fillColor=this.fillColor;return a});c(c$,"getXYCoords",function(){return this.getCurrentSubSpectrum().xyCoords});c(c$,"getPeakList",function(){return this.peakList});
c(c$,"setPeakList",function(a,b,c){this.peakList=a;this.piUnitsX=b;this.piUnitsY=c;for(b=a.size();0<=--b;)this.peakList.get(b).spectrum=this;JU.Logger.debugging&&JU.Logger.info("Spectrum "+this.getTitle()+" peaks: "+a.size());return a.size()},"JU.Lst,~S,~S");c(c$,"selectPeakByFileIndex",function(a,b,c){if(null!=this.peakList&&0<this.peakList.size()&&(null==c||this.sourceID.equals(b)))for(var g=0;g<this.peakList.size();g++)if(this.peakList.get(g).checkFileIndex(a,b,c))return System.out.println("selecting peak by FileIndex "+
this+" "+this.peakList.get(g)),this.selectedPeak=this.peakList.get(g);return null},"~S,~S,~S");c(c$,"selectPeakByFilePathTypeModel",function(a,b,c){if(null!=this.peakList&&0<this.peakList.size())for(var g=0;g<this.peakList.size();g++)if(this.peakList.get(g).checkFileTypeModel(a,b,c))return System.out.println("selecting peak byFilePathTypeModel "+this+" "+this.peakList.get(g)),this.selectedPeak=this.peakList.get(g);return null},"~S,~S,~S");c(c$,"matchesPeakTypeModel",function(a,b){if(a.equals("ID"))return this.sourceID.equalsIgnoreCase(b);
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this.peakList||0==this.peakList.size())return-1;for(var c=a.getXVal()+1E-6*b,g=-1,f=-1,e=1.7976931348623157E308*b,r=0,j=this.peakList.size();0<=--j;){var l=this.peakList.get(j).getX();0<b?l>c&&l<e?(g=j,e=l):l<c&&l-c<r&&(f=j,r=l-c):l<c&&l>e?(g=j,e=l):l>c&&l-c>r&&(f=j,r=l-c)}if(0>g){if(0>f)return-1;g=f}return g},"JSV.common.Coordinate,~N");c(c$,"getPercentYValueAt",function(a){return!this.isContinuous()?NaN:this.getYValueAt(a)},"~N");c(c$,"getYValueAt",function(a){return JSV.common.Coordinate.getYValueAt(this.xyCoords,
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case JSV.common.Spectrum.IRMode.TO_TRANS:if(!a.isAbsorbance())return a}var c=a.getConvertedSpectrum();return null!=c?c:a.isAbsorbance()?JSV.common.Spectrum.toT(a):JSV.common.Spectrum.toA(a)},"JSV.common.Spectrum,JSV.common.Spectrum.IRMode");c$.toT=c(c$,"toT",function(a){if(!a.isAbsorbance())return null;var b=a.getXYCoords(),c=Array(b.length);JSV.common.Coordinate.isYInRange(b,0,4)||(b=JSV.common.Coordinate.normalise(b,0,4));for(var g=0;g<b.length;g++)c[g]=(new JSV.common.Coordinate).set(b[g].getXVal(),
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a,JSV.common.Coordinate.shiftX(this.xyCoords,a),null!=this.subSpectra))for(var b=this.subSpectra.size();0<=--b;){var c=this.subSpectra.get(b);c!==this&&c!==this.parent&&c.addSpecShift(a)}return this.specShift},"~N");c$.allowSubSpec=c(c$,"allowSubSpec",function(a,b){return a.is1D()==b.is1D()&&a.xUnits.equalsIgnoreCase(b.xUnits)&&a.isHNMR()==b.isHNMR()},"JSV.common.Spectrum,JSV.common.Spectrum");c$.areXScalesCompatible=c(c$,"areXScalesCompatible",function(a,b,c,g){var f=a.isNMR();if(f!=b.isNMR()||a.isContinuous()!=
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this.sourceID;0==b.length&&(b=JU.PT.rep(a,"http://SIMULATION/",""));0<=b.indexOf("MOL=")&&(b="");this.title="SIMULATED "+JU.PT.rep(b,"$","")},"~S");c(c$,"setFillColor",function(a){this.fillColor=a;null!=this.convertedSpectrum&&(this.convertedSpectrum.fillColor=a)},"javajs.api.GenericColor");A(self.c$);c$=u(JSV.common.Spectrum,"IRMode",Enum);c$.getMode=c(c$,"getMode",function(a){switch(null==a?"I":a.toUpperCase().charAt(0)){case "A":return JSV.common.Spectrum.IRMode.TO_ABS;case "T":return a.equalsIgnoreCase("TOGGLE")?
JSV.common.Spectrum.IRMode.TOGGLE:JSV.common.Spectrum.IRMode.TO_TRANS;case "N":return JSV.common.Spectrum.IRMode.NO_CONVERT;default:return JSV.common.Spectrum.IRMode.TOGGLE}},"~S");q(c$,"NO_CONVERT",0,[]);q(c$,"TO_TRANS",1,[]);q(c$,"TO_ABS",2,[]);q(c$,"TOGGLE",3,[]);c$=B();D(c$,"MAXABS",4)});Jmol.___JSVDate="$Date: 2020-09-16 10:02:04 -0500 (Wed, 16 Sep 2020) $";Jmol.___JSVSvnRev="$LastChangedRevision: 22031 $";Jmol.___JSVVersion="14.31.6";s("JSV.common");c$=u(JSV.common,"JSVersion");D(c$,"VERSION",
null,"VERSION_SHORT",null);S=R=Z=null;Z=Jmol.___JSVVersion;R=Jmol.___JSVDate;S=Jmol.___JSVSvnRev;null!=R&&(R=R.substring(7,23));S=null==S?"":"/SVN"+S.substring(22,27);JSV.common.JSVersion.VERSION_SHORT=null!=Z?Z:"(Unknown version)";JSV.common.JSVersion.VERSION=JSV.common.JSVersion.VERSION_SHORT+S+"/"+(null!=R?R:"(Unknown date)");s("JSV.common");t(["java.util.Hashtable"],"JSV.common.JSVFileManager","java.io.BufferedInputStream $.BufferedReader $.InputStreamReader $.StringReader java.net.URL JU.AU $.BS $.Encoding $.JSJSONParser $.P3 $.PT $.SB JSV.common.JSVersion $.JSViewer JSV.exception.JSVException JU.Logger".split(" "),
function(){c$=u(JSV.common,"JSVFileManager");c(c$,"isApplet",function(){return null!=JSV.common.JSVFileManager.appletDocumentBase});c$.getFileAsString=c(c$,"getFileAsString",function(a){if(null==a)return null;var b,c=new JU.SB;try{b=JSV.common.JSVFileManager.getBufferedReaderFromName(a,null);for(var g;null!=(g=b.readLine());)c.append(g),c.appendC("\n");b.close()}catch(f){if(y(f,Exception))return null;throw f;}return c.toString()},"~S");c$.getBufferedReaderForInputStream=c(c$,"getBufferedReaderForInputStream",
function(a){try{return new java.io.BufferedReader(new java.io.InputStreamReader(a,"UTF-8"))}catch(b){if(y(b,Exception))return null;throw b;}},"java.io.InputStream");c$.getBufferedReaderForStringOrBytes=c(c$,"getBufferedReaderForStringOrBytes",function(a){return null==a?null:new java.io.BufferedReader(new java.io.StringReader(v(a,String)?a:String.instantialize(a)))},"~O");c$.getBufferedReaderFromName=c(c$,"getBufferedReaderFromName",function(a,b){if(null==a)throw new JSV.exception.JSVException("Cannot find "+
a);JU.Logger.info("JSVFileManager getBufferedReaderFromName "+a);var c=JSV.common.JSVFileManager.getFullPathName(a);c.equals(a)||JU.Logger.info("JSVFileManager getBufferedReaderFromName "+c);return JSV.common.JSVFileManager.getUnzippedBufferedReaderFromName(c,b)},"~S,~S");c$.getFullPathName=c(c$,"getFullPathName",function(a){try{if(null==JSV.common.JSVFileManager.appletDocumentBase){if(JSV.common.JSVFileManager.isURL(a)){var b=new java.net.URL(U("java.net.URL"),a,null);return b.toString()}return JSV.common.JSVFileManager.viewer.apiPlatform.newFile(a).getFullPath()}if(1==
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function(a){for(var b=0;b<JSV.common.JSVFileManager.urlPrefixes.length;++b)if(a.startsWith(JSV.common.JSVFileManager.urlPrefixes[b]))return b;return-1},"~S");c$.isLocal=c(c$,"isLocal",function(a){if(null==a)return!1;a=JSV.common.JSVFileManager.urlTypeIndex(a);return 0>a||4==a},"~S");c$.getUnzippedBufferedReaderFromName=c(c$,"getUnzippedBufferedReaderFromName",function(a,b){var c=null;0<=a.indexOf("|")&&(c=JU.PT.split(a,"|"),null!=c&&0<c.length&&(a=c[0]));if(a.startsWith("http://SIMULATION/"))return JSV.common.JSVFileManager.getSimulationReader(a);
try{var g=JSV.common.JSVFileManager.getInputStream(a,!0,null);if(v(g,JU.SB)||v(g,String))return new java.io.BufferedReader(new java.io.StringReader(g.toString()));if(JSV.common.JSVFileManager.isAB(g))return new java.io.BufferedReader(new java.io.StringReader(String.instantialize(g)));var f=new java.io.BufferedInputStream(g),g=f;if(JSV.common.JSVFileManager.isZipFile(f))return JSV.common.JSViewer.getInterface("JSV.common.JSVZipUtil").newJSVZipFileSequentialReader(g,c,b);JSV.common.JSVFileManager.isGzip(f)&&
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function(a){var b=JSV.common.JSVFileManager.cacheGet(a);null==b&&JSV.common.JSVFileManager.cachePut(a,b=JSV.common.JSVFileManager.getNMRSimulationJCampDX(a.substring(18)));return JSV.common.JSVFileManager.getBufferedReaderForStringOrBytes(b)},"~S");c$.isAB=c(c$,"isAB",function(a){return ga(a)},"~O");c$.isZipFile=c(c$,"isZipFile",function(a){try{var b=H(4,0);a.mark(5);var c=a.read(b,0,4);a.reset();return 4==c&&80==b[0]&&75==b[1]&&3==b[2]&&4==b[3]}catch(g){if(y(g,Exception))throw new JSV.exception.JSVException(g.toString());
throw g;}},"java.io.InputStream");c$.isGzip=c(c$,"isGzip",function(a){try{var b=H(4,0);a.mark(5);var c=a.read(b,0,4);a.reset();return 4==c&&31==b[0]&&139==b[1]}catch(g){if(y(g,Exception))throw new JSV.exception.JSVException(g.toString());throw g;}},"java.io.InputStream");c$.getStreamAsBytes=c(c$,"getStreamAsBytes",function(a,b){try{for(var c=H(1024,0),g=null==b?H(4096,0):null,f=0,e=0;0<(f=a.read(c,0,1024));)e+=f,null==b?(e>=g.length&&(g=JU.AU.ensureLengthByte(g,2*e)),System.arraycopy(c,0,g,e-f,f)):
b.write(c,0,f);a.close();return null==b?JU.AU.arrayCopyByte(g,e):e+" bytes"}catch(r){if(y(r,Exception))throw new JSV.exception.JSVException(r.toString());throw r;}},"java.io.BufferedInputStream,JU.OC");c$.postByteArray=c(c$,"postByteArray",function(a,b){var c=null;try{c=JSV.common.JSVFileManager.getInputStream(a,!1,b)}catch(g){if(y(g,Exception))c=g.toString();else throw g;}if(v(c,String))return c;try{c=JSV.common.JSVFileManager.getStreamAsBytes(c,null)}catch(f){if(y(f,JSV.exception.JSVException))try{c.close()}catch(e){if(!y(e,
Exception))throw e;}else throw f;}return null==c?"":JSV.common.JSVFileManager.fixUTF(c)},"~S,~A");c$.getUTFEncoding=c(c$,"getUTFEncoding",function(a){return 3<=a.length&&239==a[0]&&187==a[1]&&191==a[2]?JU.Encoding.UTF8:4<=a.length&&0==a[0]&&0==a[1]&&254==a[2]&&255==a[3]?JU.Encoding.UTF_32BE:4<=a.length&&255==a[0]&&254==a[1]&&0==a[2]&&0==a[3]?JU.Encoding.UTF_32LE:2<=a.length&&255==a[0]&&254==a[1]?JU.Encoding.UTF_16LE:2<=a.length&&254==a[0]&&255==a[1]?JU.Encoding.UTF_16BE:JU.Encoding.NONE},"~A");c$.fixUTF=
c(c$,"fixUTF",function(a){var b=JSV.common.JSVFileManager.getUTFEncoding(a);if(b!==JU.Encoding.NONE)try{var c=String.instantialize(a,b.name().$replace("_","-"));switch(b){case JU.Encoding.UTF8:case JU.Encoding.UTF_16BE:case JU.Encoding.UTF_16LE:c=c.substring(1)}return c}catch(g){if(y(g,java.io.IOException))JU.Logger.error("fixUTF error "+g);else throw g;}return String.instantialize(a)},"~A");c$.getInputStream=c(c$,"getInputStream",function(a,b,c){var g=JSV.common.JSVFileManager.isURL(a),f=null!=JSV.common.JSVFileManager.appletDocumentBase,
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if(v(e,String))throw new JSV.exception.JSVException(e);return e},"~S,~B,~A");c$.getNMRSimulationJCampDX=c(c$,"getNMRSimulationJCampDX",function(a){var b=0,c=null,g=JSV.common.JSVFileManager.getSimulationType(a);a.startsWith(g)&&(a=a.substring(g.length+1));var f=a.startsWith("MOL=");f&&(a=a.substring(4),b=a.indexOf("/n__Jmol"),0<b&&(a=a.substring(0,b)+JU.PT.rep(a.substring(b),"/n","\n")),c=a=JU.PT.rep(a,"\\n","\n"));var e=""+JSV.common.JSVFileManager.getSimulationHash(a,g);JU.Logger.debugging&&JU.Logger.info("JSVFileManager type="+
g+" key="+e+" name="+a);var r=JSV.common.JSVFileManager.cacheGet(e);if(null!=r)return r;var j=f?null:JU.PT.rep(JSV.common.JSVFileManager.nciResolver,"%FILE",JU.PT.escapeUrl(a));if(!f&&null==(c=JSV.common.JSVFileManager.getFileAsString(j))||0<=c.indexOf("<html"))return JU.Logger.error("no MOL data returned by NCI"),null;var r=g.equals("C13"),l=JSV.common.JSVFileManager.getFileAsString((r?JSV.common.JSVFileManager.nmrdbServerC13:JSV.common.JSVFileManager.nmrdbServerH1)+c),b=(new JU.JSJSONParser).parseMap(l,
!0);JSV.common.JSVFileManager.cachePut("json",l);r&&(b=b.get("result"));l=b.get("molfile");null==l?(System.out.println("JSVFileManager: no MOL file returned from EPFL"),l=c):System.out.println("JSVFileManager: MOL file hash="+l.hashCode());l=JSV.common.JSVFileManager.getAtomMap(l,c);JSV.common.JSVFileManager.cachePut("mol",c);f||Jmol.Cache.put("http://SIMULATION/"+g+"/"+a+"#molfile",c.getBytes());var p="<Signals src="+JU.PT.esc(JU.PT.rep(r?JSV.common.JSVFileManager.nmrdbServerC13:JSV.common.JSVFileManager.nmrdbServerH1,
"?POST?molfile=",""))+">\n";if(r){for(var b=b.get("spectrum13C"),r=b.get("jcamp").get("value"),k=b.get("predCSNuc"),m=new JU.SB,n=k.size();0<=--n;)b=k.get(n),m.append("<Signal "),JSV.common.JSVFileManager.setAttr(m,"type","nucleus",b),null==l?JSV.common.JSVFileManager.setAttr(m,"atoms","assignment",b):m.append('atoms="').appendI(l[JU.PT.parseInt(b.get("assignment"))]).append('" '),JSV.common.JSVFileManager.setAttr(m,"multiplicity","multiplicity",b),b=b.get("integralData"),JSV.common.JSVFileManager.setAttr(m,
"xMin","from",b),JSV.common.JSVFileManager.setAttr(m,"xMax","to",b),JSV.common.JSVFileManager.setAttr(m,"integral","value",b),m.append("></Signal>\n");m.append("</Signals>");p+=m.toString()}else{p=JU.PT.rep(b.get("xml"),"<Signals>",p);if(null!=l){m=new JU.SB;p=JU.PT.split(p,' atoms="');m.append(p[0]);for(n=1;n<p.length;n++)r=p[n],k=JU.PT.parseInt(r),m.append(' atoms="').appendI(l[k]).append(r.substring(r.indexOf('"')));p=m.toString()}p=JU.PT.rep(p,"</","\n</");p=JU.PT.rep(p,"><",">\n<");p=JU.PT.rep(p,
'\\"','"');r=b.get("jcamp")}JU.Logger.debugging&&JU.Logger.info(p);JSV.common.JSVFileManager.cachePut("xml",p);r="##TITLE="+(f?"JMOL SIMULATION/"+g:a)+"\n"+r.substring(r.indexOf("\n##")+1);b=c.indexOf("\n");b=c.indexOf("\n",b+1);0<b&&b==c.indexOf("\n \n")&&(c=c.substring(0,b+1)+"Created "+JSV.common.JSVFileManager.viewer.apiPlatform.getDateFormat("8824")+" by JSpecView "+JSV.common.JSVersion.VERSION+c.substring(b+1));b=r.indexOf("##.");a=JSV.common.JSVFileManager.getAbbreviatedSimulationName(a,g,
!1);g=a.indexOf("id='");f&&0<g&&(a=a.substring(g+4,(a+"'").indexOf("'",g+4)));r=r.substring(0,b)+"##$MODELS=\n<Models>\n<ModelData id="+JU.PT.esc(a)+' type="MOL" src='+JU.PT.esc(j)+">\n"+c+"</ModelData>\n</Models>\n##$SIGNALS=\n"+p+"\n"+r.substring(b);JSV.common.JSVFileManager.cachePut("jcamp",r);JSV.common.JSVFileManager.cachePut(e,r);return r},"~S");c$.getAtomMap=c(c$,"getAtomMap",function(a,b){var c=JSV.common.JSVFileManager.getCoord(a),g=JSV.common.JSVFileManager.getCoord(b),f=c.length;if(f!=
g.length)return null;var e=E(f,0),r=new JU.BS;r.setBits(0,f);for(var j=!1,l=0;l<f;l++)for(var p=c[l],k=r.nextSetBit(0);0<=k;k=r.nextSetBit(k+1))if(0.1>p.distanceSquared(g[k])){r.clear(k);e[l]=k;l!=k&&(j=!0);break}return j?e:null},"~S,~S");c$.getCoord=c(c$,"getCoord",function(a){a=JU.PT.split(a,"\n");for(var b=P(3,0),c=Integer.parseInt(a[3].substring(0,3).trim()),g=Array(c),f=0;f<c;f++)JU.PT.parseFloatArrayInfested(JU.PT.getTokens(a[4+f].substring(0,31)),b),g[f]=JU.P3.new3(b[0],b[1],b[2]);return g},
"~S");c$.setAttr=c(c$,"setAttr",function(a,b,c,g){a.append(b+'="').appendO(g.get(c)).append('" ')},"JU.SB,~S,~S,java.util.Map");c$.getResource=c(c$,"getResource",function(a,b,c){var g=null;try{if(null==(g=a.getClass().getResource(b)))c[0]="Couldn't find file: "+b}catch(f){if(y(f,Exception))c[0]="Exception "+f+" in getResource "+b;else throw f;}return g},"~O,~S,~A");c$.getResourceString=c(c$,"getResourceString",function(a,b,c){a=JSV.common.JSVFileManager.getResource(a,b,c);if(null==a)return c[0]="Error loading resource "+
b,null;if(v(a,String))return JSV.common.JSVFileManager.getFileAsString(a);b=new JU.SB;try{for(var g=new java.io.BufferedReader(new java.io.InputStreamReader(a.getContent(),"UTF-8")),f;null!=(f=g.readLine());)b.append(f).append("\n");g.close()}catch(e){if(y(e,Exception))c[0]=e.toString();else throw e;}return b.toString()},"~O,~S,~A");c$.getJmolFilePath=c(c$,"getJmolFilePath",function(a){try{a=JSV.common.JSVFileManager.getFullPathName(a)}catch(b){if(y(b,JSV.exception.JSVException))return null;throw b;
}return null==JSV.common.JSVFileManager.appletDocumentBase?a.$replace("\\","/"):a},"~S");c$.getTagName=c(c$,"getTagName",function(a){if(null==a)return"String"+ ++JSV.common.JSVFileManager.stringCount;if(JSV.common.JSVFileManager.isURL(a))try{if(a.startsWith("http://SIMULATION/"))return JSV.common.JSVFileManager.getAbbrSimulationFileName(a);var b=(new java.net.URL(U("java.net.URL"),a,null)).getFile();return b.substring(b.lastIndexOf("/")+1)}catch(c){if(y(c,java.io.IOException))return null;throw c;
}return JSV.common.JSVFileManager.viewer.apiPlatform.newFile(a).getName()},"~S");c$.setDocumentBase=c(c$,"setDocumentBase",function(a,b){JSV.common.JSVFileManager.viewer=a;JSV.common.JSVFileManager.appletDocumentBase=b},"JSV.common.JSViewer,java.net.URL");c$.getSimulationType=c(c$,"getSimulationType",function(a){return 0<=a.indexOf("C13/")?"C13":"H1"},"~S");D(c$,"SIMULATION_PROTOCOL","http://SIMULATION/","appletDocumentBase",null,"viewer",null,"jsDocumentBase","");c$.urlPrefixes=c$.prototype.urlPrefixes=
w(-1,["http:","https:","ftp:","http://SIMULATION/","file:"]);D(c$,"URL_LOCAL",4);c$.htCorrelationCache=c$.prototype.htCorrelationCache=new java.util.Hashtable;D(c$,"nciResolver","https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True","nmrdbServerH1","https://www.nmrdb.org/tools/jmol/predict.php?POST?molfile=","nmrdbServerC13","https://www.nmrdb.org/service/jsmol13c?POST?molfile=","stringCount",0)});s("JSV.common");t(["javajs.api.BytePoster","J.api.PlatformViewer","JSV.common.Spectrum"],
"JSV.common.JSViewer","java.io.File java.lang.Boolean $.Character $.Double $.Float $.Thread java.net.URL java.util.Arrays $.Hashtable JU.CU $.Lst $.OC $.PT $.SB JSV.common.Annotation $.ExportType $.JSVFileManager $.PanelData $.PanelNode $.Parameters $.PeakInfo $.PrintLayout $.RepaintManager $.ScriptToken $.ScriptTokenizer JSV.source.JDXReader $.JDXSource JSV.tree.SimpleTree JU.Logger".split(" "),function(){c$=k(function(){this.irMode=this.overlayLegendDialog=this.viewDialog=this.dialogManager=this.jsvpPopupMenu=
this.fileHelper=this.scriptQueue=this.properties=this.mainPanel=this.selectedPanel=this.repaintManager=this.parameters=this.panelNodes=this.currentSource=this.spectraTree=this.g2d=this.si=null;this.autoShowLegend=this.autoIntegrate=this.interfaceOverlaid=this.loadImaginary=!1;this.obscureTitleFromUser=null;this.allowMenu=!0;this.initialEndIndex=this.initialStartIndex=-1;this.isSigned=this.isApplet=this.isSingleThreaded=!1;this.recentScript="";this.display=this.html5Applet=this.syncID=this.fullName=
this.appletName=null;this.maximumSize=2147483647;this.scriptLevelCount=this.nViews=this.fileCount=this.screenWidth=this.screenHeight=0;this.apiPlatform=this.integrationRatios=this.returnFromJmolModel=null;this.popupZoomEnabled=this.popupAllowMenu=!0;this.defaultLoadScript=null;this.nmrMaxY=NaN;this.overlayLegendVisible=!1;this.recentStackPercent=5;this.offWindowFrame=this.lastPrintLayout=null;this.recentOpenURL="http://";this.recentURL=null;this.recentSimulation="tylenol";m(this,arguments)},JSV.common,
"JSViewer",null,[J.api.PlatformViewer,javajs.api.BytePoster]);F(c$,function(){this.irMode=JSV.common.Spectrum.IRMode.NO_CONVERT});c(c$,"setProperty",function(a,b){null!=this.properties&&this.properties.setProperty(a,b)},"~S,~S");c(c$,"setNode",function(a){a.jsvp!==this.selectedPanel&&this.si.siSetSelectedPanel(a.jsvp);this.si.siSendPanelChange();this.si.siNodeSet(a)},"JSV.common.PanelNode");n(c$,function(a,b,c){this.si=a;this.isApplet=b;JSV.common.JSViewer.isJS=b&&c;c=null;self.Jmol&&(c=Jmol);JSV.common.JSViewer.jmolObject=
c;this.isSigned=a.isSigned();this.apiPlatform=this.getPlatformInterface("Platform");this.apiPlatform.setViewer(this,this.display);this.g2d=this.getPlatformInterface("G2D");this.spectraTree=new JSV.tree.SimpleTree(this);this.parameters=this.getPlatformInterface("Parameters");this.parameters.setName("applet");this.fileHelper=this.getPlatformInterface("FileHelper").set(this);this.isSingleThreaded=this.apiPlatform.isSingleThreaded();this.panelNodes=new JU.Lst;this.repaintManager=new JSV.common.RepaintManager(this);
b||this.setPopupMenu(!0,!0)},"JSV.api.ScriptInterface,~B,~B");c(c$,"setPopupMenu",function(a,b){this.popupAllowMenu=a;this.popupZoomEnabled=b},"~B,~B");c(c$,"showMenu",function(a,b){if(this.popupAllowMenu){if(null==this.jsvpPopupMenu)try{this.jsvpPopupMenu=this.getPlatformInterface("Popup"),this.jsvpPopupMenu.jpiInitialize(this,this.isApplet?"appletMenu":"appMenu"),this.jsvpPopupMenu.setEnabled(this.popupAllowMenu,this.popupZoomEnabled)}catch(c){if(y(c,Exception)){JU.Logger.error(c+" initializing popup menu");
return}throw c;}this.jsvpPopupMenu.jpiShow(a,b)}},"~N,~N");c(c$,"runScriptNow",function(a){System.out.println(this.checkScript(a));this.scriptLevelCount++;null==a&&(a="");a=a.trim();if(a.startsWith("!"))a=a.substring(1).trim();else if(a.startsWith(">"))return JU.Logger.error(a),!0;if(0<=a.indexOf("<PeakData"))return this.syncScript(a),!0;JU.Logger.info("RUNSCRIPT "+a);var b=!0,c=10;a=new JSV.common.ScriptTokenizer(a,!0);for(var g=null;null!=a&&a.hasMoreTokens()&&0<c&&b;){var f=a.nextToken(),e=new JSV.common.ScriptTokenizer(f,
!1),r=JSV.common.ScriptToken.getKey(e);if(null!=r){var j=JSV.common.ScriptToken.getScriptToken(r),e=JSV.common.ScriptToken.getValue(j,e,f);try{switch(j){case JSV.common.ScriptToken.UNKNOWN:JU.Logger.info("Unrecognized parameter: "+r);--c;break;default:if(null==this.selectedPanel)break;this.parameters.set(this.pd(),j,e);this.si.siUpdateBoolean(j,JSV.common.Parameters.isTrue(e));break;case JSV.common.ScriptToken.PEAKCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.SYNCCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.COORDCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.LOADFILECALLBACKFUNCTIONNAME:this.si.siExecSetCallback(j,
e);break;case JSV.common.ScriptToken.DEFAULTLOADSCRIPT:e=JU.PT.rep(e,"''",'"');this.defaultLoadScript=0<e.length?e:null;break;case JSV.common.ScriptToken.DEFAULTNMRNORMALIZATION:this.nmrMaxY=JU.PT.parseFloat(e);break;case JSV.common.ScriptToken.AUTOINTEGRATE:this.autoIntegrate=JSV.common.Parameters.isTrue(e);break;case JSV.common.ScriptToken.CLOSE:this.execClose(e);break;case JSV.common.ScriptToken.DEBUG:JU.Logger.setLogLevel(e.toLowerCase().equals("high")?6:JSV.common.Parameters.isTrue(e)?5:4);break;
case JSV.common.ScriptToken.GETPROPERTY:var l=null==this.selectedPanel?null:this.getPropertyAsJavaObject(e);null!=l&&this.selectedPanel.showMessage(JU.PT.toJSON(null,l),e);break;case JSV.common.ScriptToken.HELP:this.execHelp(e);break;case JSV.common.ScriptToken.HIDDEN:this.si.siExecHidden(JSV.common.Parameters.isTrue(e));break;case JSV.common.ScriptToken.INTEGRATIONRATIOS:this.integrationRatios=e;this.execIntegrate(null);break;case JSV.common.ScriptToken.INTERFACE:this.interfaceOverlaid=this.checkOvelayInterface(e);
break;case JSV.common.ScriptToken.INTEGRALOFFSET:case JSV.common.ScriptToken.INTEGRALRANGE:this.execSetIntegralParameter(j,Double.parseDouble(e));break;case JSV.common.ScriptToken.INVERTY:this.execZoom("invertY");break;case JSV.common.ScriptToken.JMOL:this.si.syncToJmol(e);break;case JSV.common.ScriptToken.JSV:this.syncScript(JU.PT.trimQuotes(e));break;case JSV.common.ScriptToken.LOAD:if(0==e.length){null!=this.defaultLoadScript&&this.runScriptNow(this.defaultLoadScript);break}this.execLoad(e,(null==
this.defaultLoadScript?"":this.defaultLoadScript+";")+a.getRemainingScript());g=null==this.selectedPanel?null:this.si.siLoaded(e);a=null;break;case JSV.common.ScriptToken.LOADIMAGINARY:this.loadImaginary=JSV.common.Parameters.isTrue(e);break;case JSV.common.ScriptToken.PEAK:this.execPeak(e);break;case JSV.common.ScriptToken.PEAKLIST:this.execPeakList(e);break;case JSV.common.ScriptToken.SCALEBY:this.scaleSelectedBy(this.panelNodes,e);break;case JSV.common.ScriptToken.SCRIPT:if(e.equals("")||e.toLowerCase().startsWith("inline"))this.execScriptInline(e);
else{var p=JSV.common.JSVFileManager.getFileAsString(e);null!=p&&100>this.scriptLevelCount&&this.runScriptNow(p)}break;case JSV.common.ScriptToken.SELECT:this.execSelect(e);break;case JSV.common.ScriptToken.SPECTRUM:case JSV.common.ScriptToken.SPECTRUMNUMBER:this.setSpectrum(e)||(b=!1);break;case JSV.common.ScriptToken.STACKOFFSETY:this.execOverlayOffsetY(JU.PT.parseInt(""+JU.PT.parseFloat(e)));break;case JSV.common.ScriptToken.TEST:this.si.siExecTest(e);break;case JSV.common.ScriptToken.OVERLAY:case JSV.common.ScriptToken.VIEW:this.execView(e,
!0);break;case JSV.common.ScriptToken.HIGHLIGHT:b=this.highlight(f);break;case JSV.common.ScriptToken.FINDX:case JSV.common.ScriptToken.GETSOLUTIONCOLOR:case JSV.common.ScriptToken.INTEGRATION:case JSV.common.ScriptToken.INTEGRATE:case JSV.common.ScriptToken.IRMODE:case JSV.common.ScriptToken.LABEL:case JSV.common.ScriptToken.LINK:case JSV.common.ScriptToken.OVERLAYSTACKED:case JSV.common.ScriptToken.PRINT:case JSV.common.ScriptToken.SETPEAK:case JSV.common.ScriptToken.SETX:case JSV.common.ScriptToken.SHIFTX:case JSV.common.ScriptToken.SHOWERRORS:case JSV.common.ScriptToken.SHOWMEASUREMENTS:case JSV.common.ScriptToken.SHOWMENU:case JSV.common.ScriptToken.SHOWKEY:case JSV.common.ScriptToken.SHOWPEAKLIST:case JSV.common.ScriptToken.SHOWINTEGRATION:case JSV.common.ScriptToken.SHOWPROPERTIES:case JSV.common.ScriptToken.SHOWSOURCE:case JSV.common.ScriptToken.YSCALE:case JSV.common.ScriptToken.WRITE:case JSV.common.ScriptToken.ZOOM:if(this.isClosed()){b=
!1;break}switch(j){case JSV.common.ScriptToken.FINDX:this.pd().findX(null,Double.parseDouble(e));break;case JSV.common.ScriptToken.GETSOLUTIONCOLOR:this.show("solutioncolor"+e.toLowerCase());break;case JSV.common.ScriptToken.INTEGRATION:case JSV.common.ScriptToken.INTEGRATE:this.execIntegrate(e);break;case JSV.common.ScriptToken.IRMODE:this.execIRMode(e);break;case JSV.common.ScriptToken.LABEL:this.pd().addAnnotation(JSV.common.ScriptToken.getTokens(e));break;case JSV.common.ScriptToken.LINK:this.pd().linkSpectra(JSV.common.PanelData.LinkMode.getMode(e));
break;case JSV.common.ScriptToken.OVERLAYSTACKED:this.pd().splitStack(!JSV.common.Parameters.isTrue(e));break;case JSV.common.ScriptToken.PRINT:g=this.execWrite(null);break;case JSV.common.ScriptToken.SETPEAK:case JSV.common.ScriptToken.SETX:case JSV.common.ScriptToken.SHIFTX:this.execShiftSpectrum(j,f);break;case JSV.common.ScriptToken.SHOWERRORS:this.show("errors");break;case JSV.common.ScriptToken.SHOWINTEGRATION:this.pd().showAnnotation(JSV.common.Annotation.AType.Integration,JSV.common.Parameters.getTFToggle(e));
break;case JSV.common.ScriptToken.SHOWKEY:this.setOverlayLegendVisibility(JSV.common.Parameters.getTFToggle(e),!0);break;case JSV.common.ScriptToken.SHOWMEASUREMENTS:this.pd().showAnnotation(JSV.common.Annotation.AType.Measurements,JSV.common.Parameters.getTFToggle(e));break;case JSV.common.ScriptToken.SHOWMENU:this.showMenu(-2147483648,0);break;case JSV.common.ScriptToken.SHOWPEAKLIST:this.pd().showAnnotation(JSV.common.Annotation.AType.PeakList,JSV.common.Parameters.getTFToggle(e));break;case JSV.common.ScriptToken.SHOWPROPERTIES:this.show("properties");
break;case JSV.common.ScriptToken.SHOWSOURCE:this.show("source");break;case JSV.common.ScriptToken.YSCALE:this.setYScale(e);break;case JSV.common.ScriptToken.WINDOW:this.si.siNewWindow(JSV.common.Parameters.isTrue(e),!1);break;case JSV.common.ScriptToken.WRITE:g=this.execWrite(e);break;case JSV.common.ScriptToken.ZOOM:b=this.execZoom(e)}}}catch(k){if(y(k,Exception))g=k.toString(),JU.Logger.error(k.toString()),b=!1,--c;else throw k;}}}this.scriptLevelCount--;this.si.siExecScriptComplete(g,!0);return b},
"~S");c(c$,"execShiftSpectrum",function(a,b){var c=JSV.common.ScriptToken.getTokens(b),g=NaN,f=NaN;switch(c.size()){case 2:f=c.get(1);f.equals("")&&(f="?");f=f.equalsIgnoreCase("NONE")?1.7976931348623157E308:f.equalsIgnoreCase("?")?NaN:Double.parseDouble(f);break;case 3:g=Double.parseDouble(c.get(1));f=Double.parseDouble(c.get(2));break;default:Double.parseDouble("")}c=0;switch(a){case JSV.common.ScriptToken.SETPEAK:c=1;break;case JSV.common.ScriptToken.SETX:c=2;break;case JSV.common.ScriptToken.SHIFTX:c=
3;Double.isNaN(f)&&Double.parseDouble("");break;default:return}this.pd().shiftSpectrum(c,g,f)},"JSV.common.ScriptToken,~S");c(c$,"execClose",function(a){var b=!a.startsWith("!");b||(a=a.substring(1));this.close(JU.PT.trimQuotes(a));(!b||0==this.panelNodes.size())&&this.si.siValidateAndRepaint(!0)},"~S");c(c$,"checkOvelayInterface",function(a){return a.equalsIgnoreCase("single")||a.equalsIgnoreCase("overlay")},"~S");c(c$,"execPeak",function(a){try{var b=JSV.common.ScriptToken.getTokens(JU.PT.rep(a,
"#","INDEX="));a=' type="'+b.get(0).toUpperCase()+'" _match="'+JU.PT.trimQuotes(b.get(1).toUpperCase())+'"';2<b.size()&&b.get(2).equalsIgnoreCase("all")&&(a+=' title="ALL"');this.processPeakPickEvent(new JSV.common.PeakInfo(a),!1)}catch(c){if(!y(c,Exception))throw c;}},"~S");c(c$,"execPeakList",function(a){var b=this.parameters,c=JSV.common.Parameters.getTFToggle(a);if(0>a.indexOf("="))this.isClosed()||this.pd().getPeakListing(null,c);else{var c=JSV.common.ScriptToken.getTokens(a),g=b.peakListThreshold,
f=b.peakListInterpolation;try{for(var e=c.size();0<=--e;){var r=c.get(e),j=r.indexOf("=");if(!(0>=j)){var l=r.substring(0,j);a=r.substring(j+1);l.startsWith("thr")?g=Double.$valueOf(a).doubleValue():l.startsWith("int")&&(f=a.equalsIgnoreCase("none")?"NONE":"parabolic")}}b.peakListThreshold=g;b.peakListInterpolation=f;this.isClosed()||this.pd().getPeakListing(b,Boolean.TRUE)}catch(p){if(!y(p,Exception))throw p;}}},"~S");c(c$,"highlight",function(a){var b=JSV.common.ScriptToken.getTokens(a),c=b.size();
switch(c){case 3:case 5:case 6:case 7:break;case 2:case 4:if(b.get(c-1).equalsIgnoreCase("OFF"))break;default:return!1}if(!this.isClosed()){a=JU.PT.parseFloat(1<c?b.get(1):"");var g=JU.PT.parseFloat(2<c?b.get(2):""),f=this.getRGB(3<c?b.get(3):"100"),e=this.getRGB(4<c?b.get(4):"100"),r=this.getRGB(5<c?b.get(5):"100"),b=this.getRGB(6<c?b.get(6):"100");Float.isNaN(a)||Float.isNaN(g)?this.pd().removeAllHighlights():(this.pd().removeHighlight(a,g),0>b&&(b=150),0<=f&&(0<=e&&0<=r)&&this.pd().addHighlight(null,
a,g,null,f,e,r,b));this.repaint(!0)}return!0},"~S");c(c$,"getRGB",function(a){a=JU.PT.parseFloat(a);return G(Float.isNaN(a)?-1:1<a?a:255*a)},"~S");c(c$,"execZoom",function(a){var b=0,c=0,g=0,f=0;a=JU.PT.rep(a," - "," ").$replace(","," ");a=JSV.common.ScriptToken.getTokens(a);switch(a.size()){default:return!1;case 0:return b=this.pd().getCurrentGraphSet().getCurrentView(),a=Math.round(100*b.minXOnScale)/100+","+Math.round(100*b.maxXOnScale)/100,a=this.selectedPanel.getInput("Enter zoom range x1 x2",
"Zoom",a),null==a||this.execZoom(a);case 1:return a=a.get(0),a.equalsIgnoreCase("next")?this.pd().nextView():a.toLowerCase().startsWith("prev")?this.pd().previousView():a.equalsIgnoreCase("out")?this.pd().resetView():a.equalsIgnoreCase("clear")?this.pd().clearAllView():a.equalsIgnoreCase("invertY")&&this.pd().getCurrentGraphSet().invertYAxis(),!0;case 2:b=Double.parseDouble(a.get(0));c=Double.parseDouble(a.get(1));break;case 3:var e=a.get(0);e.equalsIgnoreCase("X")?(b=Double.parseDouble(a.get(1)),
c=Double.parseDouble(a.get(2))):e.equalsIgnoreCase("Y")&&(g=Double.parseDouble(a.get(1)),f=Double.parseDouble(a.get(2)));break;case 4:b=Double.parseDouble(a.get(0)),g=Double.parseDouble(a.get(1)),c=Double.parseDouble(a.get(2)),f=Double.parseDouble(a.get(3))}this.pd().setZoom(b,g,c,f);return!0},"~S");c(c$,"scaleSelectedBy",function(a,b){try{for(var c=Double.parseDouble(b),g=a.size();0<=--g;)a.get(g).pd().scaleSelectedBy(c)}catch(f){if(!y(f,Exception))throw f;}},"JU.Lst,~S");c(c$,"pd",function(){return null==
this.selectedPanel?null:this.selectedPanel.getPanelData()});c(c$,"isClosed",function(){return null==this.pd()});c(c$,"execSelect",function(a){if(a.startsWith("ID ")){if(!this.isClosed())try{this.pd().selectSpectrum(null,"ID",JU.PT.trimQuotes(a.substring(3)),!0)}catch(b){if(!y(b,Exception))throw b;}}else{for(var c=this.panelNodes,g=c.size();0<=--g;)c.get(g).pd().selectFromEntireSet(-2147483648);c=new JU.Lst;this.fillSpecList(a,c,!1)}},"~S");c(c$,"execView",function(a,b){if(a.equals(""))this.checkOverlay();
else{var c=new JU.Lst,g=this.fillSpecList(a,c,!0);0<c.size()&&this.si.siOpenDataOrFile(null,g,c,g,-1,-1,!1,null,null);b||this.si.siValidateAndRepaint(!1)}},"~S,~B");c(c$,"execIRMode",function(a){for(var b=JSV.common.Spectrum.IRMode.getMode(a),c=this.pd().getSpectrum().dataType,g=this.panelNodes.size();0<=--g;)this.panelNodes.get(g).pd().setIRMode(b,c);this.setIRmode(a)},"~S");c(c$,"execIntegrate",function(a){this.isClosed()||(this.pd().checkIntegral(this.parameters,a),null!=this.integrationRatios&&
this.pd().setIntegrationRatios(this.integrationRatios),this.integrationRatios=null,this.repaint(!0))},"~S");c(c$,"repaint",function(a){this.selectedPanel.doRepaint(a)},"~B");c(c$,"execSetIntegralParameter",function(a,b){var c=this.parameters;switch(a){case JSV.common.ScriptToken.INTEGRALRANGE:c.integralRange=b;break;case JSV.common.ScriptToken.INTEGRALOFFSET:c.integralOffset=b}this.isClosed()||this.pd().checkIntegral(this.parameters,"update")},"JSV.common.ScriptToken,~N");c(c$,"setYScale",function(a){var b=
JSV.common.ScriptToken.getTokens(a),c=0,g=!1;1<b.size()&&b.get(0).equalsIgnoreCase("ALL")&&(g=!0,c++);a=Double.parseDouble(b.get(c++));b=Double.parseDouble(b.get(c));if(g){g=this.pd().getSpectrum();for(c=this.panelNodes.size();0<=--c;){var f=this.panelNodes.get(c);f.source===this.currentSource&&JSV.common.Spectrum.areXScalesCompatible(g,f.getSpectrum(),!1,!1)&&f.pd().setZoom(0,a,0,b)}}else this.pd().setZoom(0,a,0,b)},"~S");c(c$,"setOverlayLegendVisibility",function(a,b){b&&(this.overlayLegendVisible=
null==a?!this.overlayLegendVisible:a===Boolean.TRUE);for(var c=JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes),g=this.panelNodes.size();0<=--g;)this.showOverlayLegend(this.panelNodes.get(g),this.panelNodes.get(g)===c&&this.overlayLegendVisible)},"Boolean,~B");c(c$,"showOverlayLegend",function(a,b){var c=a.legend;null==c&&b&&(c=a.setLegend(1<a.pd().getNumberOfSpectraInCurrentSet()&&1==a.pd().getNumberOfGraphSets()?this.getDialog(JSV.common.Annotation.AType.OverlayLegend,null):null));
null!=c&&c.setVisible(b)},"JSV.common.PanelNode,~B");c(c$,"syncScript",function(a){a.equals("TEST")&&(a=JSV.common.JSViewer.testScript);JU.Logger.info("JSViewer.syncScript Jmol>JSV "+a);if(0>a.indexOf("<PeakData"))a.startsWith("JSVSTR:")?this.si.syncToJmol(a):(this.runScriptNow(a),0<=a.indexOf("#SYNC_PEAKS")&&this.syncPeaksAfterSyncScript());else{JU.Logger.info(">>toJSV>> "+a);var b=JU.PT.getQuotedAttribute(a,"sourceID"),c,g,f,e;if(null==b){g=JU.PT.getQuotedAttribute(a,"file");f=JU.PT.getQuotedAttribute(a,
"index");if(null==g||null==f)return;g=JU.PT.rep(g,"#molfile","");c=JU.PT.getQuotedAttribute(a,"model");b=JU.PT.getQuotedAttribute(a,"src");e=null!=b&&b.startsWith("Jmol")?null:this.returnFromJmolModel;if(null!=c&&null!=e&&!c.equals(e)){JU.Logger.info("JSV ignoring model "+c+"; should be "+e);return}this.returnFromJmolModel=null;if(0==this.panelNodes.size()||!this.checkFileAlreadyLoaded(g))JU.Logger.info("file "+g+" not found -- JSViewer closing all and reopening"),this.si.siSyncLoad(g);a=JU.PT.getQuotedAttribute(a,
"type");e=null}else g=null,f=c=b,e=","+JU.PT.getQuotedAttribute(a,"atom")+",",a="ID";f=this.selectPanelByPeak(g,f,e);e=this.pd();e.selectSpectrum(g,a,c,!0);this.si.siSendPanelChange();e.addPeakHighlight(f);this.repaint(!0);(null==b||null!=f&&null!=f.getAtoms())&&this.si.syncToJmol(this.jmolSelect(f))}},"~S");c(c$,"syncPeaksAfterSyncScript",function(){var a=this.currentSource;if(null!=a)try{var b="file="+JU.PT.esc(a.getFilePath()),c=a.getSpectra().get(0).getPeakList(),g=new JU.SB;g.append("[");for(var f=
c.size(),a=0;a<f;a++){var e=c.get(a).toString(),e=e+" "+b;g.append(JU.PT.esc(e));0<a&&g.append(",")}g.append("]");this.si.syncToJmol("Peaks: "+g)}catch(r){if(!y(r,Exception))throw r;}});c(c$,"checkFileAlreadyLoaded",function(a){if(this.isClosed())return!1;if(this.pd().hasFileLoaded(a))return!0;for(var b=this.panelNodes.size();0<=--b;)if(this.panelNodes.get(b).pd().hasFileLoaded(a))return this.si.siSetSelectedPanel(this.panelNodes.get(b).jsvp),!0;return!1},"~S");c(c$,"selectPanelByPeak",function(a,
b,c){if(null==this.panelNodes)return null;for(var g=null,e=this.panelNodes.size();0<=--e;)this.panelNodes.get(e).pd().addPeakHighlight(null);g=this.pd().selectPeakByFileIndex(a,b,c);if(null!=g)this.setNode(JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes));else for(e=this.panelNodes.size();0<=--e;){var h=this.panelNodes.get(e);if(null!=(g=h.pd().selectPeakByFileIndex(a,b,c))){this.setNode(h);break}}return g},"~S,~S,~S");c(c$,"processPeakPickEvent",function(a){if(v(a,JSV.common.PeakInfo)){var b=
this.pd().findMatchingPeakInfo(a);if(null==b){if(!"ALL".equals(a.getTitle()))return;for(var c=null,g=0;g<this.panelNodes.size();g++)if(null!=(b=this.panelNodes.get(g).pd().findMatchingPeakInfo(a))){c=this.panelNodes.get(g);break}if(null==c)return;this.setNode(c)}a=b}else this.si.siSetSelectedPanel(a.getSource()),a=a.getPeakInfo();this.pd().addPeakHighlight(a);this.syncToJmol(a);a.isClearAll()?this.repaint(!1):this.pd().selectSpectrum(a.getFilePath(),a.getType(),a.getModel(),!0);this.si.siCheckCallbacks(a.getTitle())},
"~O,~B");c(c$,"newStructToJmol",function(a){JU.Logger.info("sending new structure to Jmol:\n"+a);this.si.syncToJmol("struct:"+a)},"~S");c(c$,"syncToJmol",function(a){this.repaint(!0);this.returnFromJmolModel=a.getModel();this.si.syncToJmol(this.jmolSelect(a))},"JSV.common.PeakInfo");c(c$,"sendPanelChange",function(){var a=this.pd(),b=a.getSpectrum(),c=b.getSelectedPeak();null==c&&(c=b.getModelPeakInfoForAutoSelectOnLoad());null==c&&(c=b.getBasePeakInfo());a.addPeakHighlight(c);JU.Logger.info(Thread.currentThread()+
"JSViewer sendFrameChange "+this.selectedPanel);this.syncToJmol(c)});c(c$,"jmolSelect",function(a){var b="IR".equals(a.getType())||"RAMAN".equals(a.getType())?"vibration ON; selectionHalos OFF;":"vibration OFF; selectionhalos "+(null==a.getAtoms()?"OFF":"ON");return"Select: "+a+' script="'+b+' " sourceID="'+this.pd().getSpectrum().sourceID+'"'},"JSV.common.PeakInfo");c(c$,"getPropertyAsJavaObject",function(a){var b=new java.util.Hashtable;if("SOURCEID".equalsIgnoreCase(a))return b.put(a,null==this.pd()?
"":this.pd().getSpectrum().sourceID),b;if(null!=a&&a.startsWith("DATA_"))return b.put(a,""+JSV.common.JSVFileManager.cacheGet(a.substring(5))),b;var c=!1;if(null!=a&&a.toUpperCase().startsWith("ALL ")||"all".equalsIgnoreCase(a))a=a.substring(3).trim(),c=!0;"".equals(a)&&(a=null);if("NAMES".equalsIgnoreCase(a)||"KEYS".equalsIgnoreCase(a))a="";var g=this.pd().getInfo(!0,a);if(!c&&null!=g)return g;null!=g&&b.put("current",g);c=new JU.Lst;for(g=0;g<this.panelNodes.size();g++)null!=this.panelNodes.get(g).jsvp&&
c.addLast(this.panelNodes.get(g).getInfo(a));b.put("items",c);return b},"~S");c(c$,"getCoordinate",function(){if(!this.isClosed()){var a=this.pd().getClickedCoordinate();if(null!=a)return a.getXVal()+" "+a.getYVal()}return""});c(c$,"fillSpecList",function(a,b,c){var g,e=null,h=a.equalsIgnoreCase("NONE");if(h||a.equalsIgnoreCase("all"))a="*";if(0>a.indexOf("*")){g=a.$plit(" ");a=new JU.SB;for(var r=0;r<g.length;r++){var j=g[r].indexOf(".");j!=g[r].lastIndexOf(".")&&(g[r]=g[r].substring(0,j+1)+g[r].substring(j+
1).$replace(".","_"));a.append(g[r]).append(" ")}a=a.toString().trim()}if(a.equals("*"))g=JSV.common.ScriptToken.getTokens(JSV.common.PanelNode.getSpectrumListAsString(this.panelNodes));else if(a.startsWith('"')||a.startsWith("'"))g=JSV.common.ScriptToken.getTokens(a);else if(a=JU.PT.rep(a,"_"," _ "),a=JU.PT.rep(a,"-"," - "),g=JSV.common.ScriptToken.getTokens(a),e=JSV.common.ScriptToken.getTokens(JSV.common.PanelNode.getSpectrumListAsString(this.panelNodes)),0==e.size())return null;var l=this.isClosed()?
"1.":JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes).id,l=l.substring(0,l.indexOf(".")+1);a=new JU.SB;for(var p=g.size(),k=null,r=0;r<p;r++){var m=g.get(r),j=NaN,n=-1;r+1<p&&g.get(r+1).equals("*")?(r+=2,j=Double.parseDouble(g.get(r))):r+1<p&&g.get(r+1).equals("_")&&(r+=2,n=Integer.parseInt(g.get(r)));if(m.equals("-")){null==k&&(k=e.get(0));m=r+1==p?e.get(e.size()-1):g.get(++r);m.contains(".")||(m=l+m);for(j=0;j<e.size()&&!e.get(j).equals(k);)j++;for(j++;j<e.size()&&!k.equals(m);){var q=
JSV.common.PanelNode.findNodeById(k=e.get(j++),this.panelNodes);b.addLast(q.pd().getSpectrumAt(0));a.append(",").append(k)}}else if(m.startsWith("'")&&m.endsWith("'")&&(m='"'+JU.PT.trim(m,"'")+'"'),m.startsWith('"'))for(var m=JU.PT.trim(m,'"'),n=this.panelNodes.size(),s=0;s<n;s++){if(q=this.panelNodes.get(s),null!=q.fileName&&q.fileName.startsWith(m)||null!=q.frameTitle&&q.frameTitle.startsWith(m))this.addSpecToList(q.pd(),j,-1,b,c),a.append(",").append(q.id)}else m.contains(".")||(m=l+m),q=JSV.common.PanelNode.findNodeById(m,
this.panelNodes),null!=q&&(k=m,this.addSpecToList(q.pd(),j,n,b,c),a.append(",").append(m),0<n&&a.append(".").appendI(n))}c&&0<b.size()&&(q=JSV.common.PanelNode.findNodeById(a.substring(1),this.panelNodes),null!=q&&(this.setNode(q),b.clear()));return h?"NONE":0<a.length()?a.toString().substring(1):null},"~S,JU.Lst,~B");c(c$,"addSpecToList",function(a,b,c,g,e){e?(a.getSpectrumAt(0).setUserYFactor(Double.isNaN(b)?1:b),a.addToList(c-1,g)):a.selectFromEntireSet(c-1)},"JSV.common.PanelData,~N,~N,JU.Lst,~B");
c(c$,"getSolutionColor",function(a){var b=this.pd().getSpectrum(),c=b.canShowSolutionColor()?JSV.common.JSViewer.getInterface("JSV.common.Visible"):null;return null==c?-1:c.getColour(b,a)},"~B");c(c$,"openDataOrFile",function(a,b,c,g,e,h,r,j){if("NONE".equals(b))return this.close("View*"),0;this.si.writeStatus("");var l=null,p=null,k=null,m=!1;null!=g&&g.startsWith("cache://")&&(a=Jmol.Cache.get(b=g));if(null!=a)try{k=b,p=l=JSV.common.JSVFileManager.getFullPathName(b)}catch(n){if(!y(n,JSV.exception.JSVException))throw n;
}else if(null!=c)m=!0,p=k=l="View"+ ++this.nViews;else if(null!=g)try{this.recentURL=l=(new java.net.URL(JSV.common.JSVFileManager.appletDocumentBase,g,null)).toString(),k=JSV.common.JSVFileManager.getTagName(l)}catch(q){if(y(q,java.net.MalformedURLException))l=this.apiPlatform.newFile(g),k=l.getName(),p=l=l.getFullPath(),this.recentURL=null;else throw q;}b=-1;if(0<=(b=JSV.common.PanelNode.isOpen(this.panelNodes,l))||0<=(b=JSV.common.PanelNode.isOpen(this.panelNodes,g)))return m?(--this.nViews,this.setNode(this.panelNodes.get(b))):
this.si.writeStatus(l+" is already open"),-1;!r&&!m&&this.close("all");this.si.setCursor(3);try{this.si.siSetCurrentSource(m?JSV.source.JDXSource.createView(c):JSV.source.JDXReader.createJDXSource(a,l,this.obscureTitleFromUser===Boolean.TRUE,this.loadImaginary,e,h,this.nmrMaxY))}catch(s){if(y(s,Exception))return alert(s.toString()),this.si.setCursor(0),this.isApplet&&this.selectedPanel.showMessage(s.toString(),"Error Opening File"),-3;throw s;}this.si.setCursor(0);System.gc();null==p?(p=this.currentSource.getFilePath(),
null!=p&&(k=p.substring(p.lastIndexOf("/")+1))):this.currentSource.setFilePath(p);null==j&&!m&&(j=p);null!=j&&this.currentSource.setID(j);this.si.siSetLoaded(k,p);a=this.currentSource.getJDXSpectrum(0);if(null==a)return-4;c=this.currentSource.getSpectra();JSV.common.Spectrum.process(c,this.irMode);c=this.interfaceOverlaid||a.isAutoOverlayFromJmolClick();m||c&&this.currentSource.isCompoundSource?this.combineSpectra(m?g:null):this.splitSpectra();this.pd().setTaintedAll();m||this.si.siUpdateRecentMenus(l);
return 0},"~O,~S,JU.Lst,~S,~N,~N,~B,~S");c(c$,"close",function(a){var b=0,c=null==a?-2:a.indexOf(">");0<c&&(b=JU.PT.parseInt(a.substring(c+1).trim()),a=a.substring(0,c).trim());"*".equals(a)&&(a="all");var g="all"===a;if(null==a||0==b&&a.equalsIgnoreCase("all"))this.closeSource(null);else{var e=a.equalsIgnoreCase("views"),c=new JU.Lst;a=a.$replace("\\","/");var h=this.panelNodes.size(),b=h-b;if(a.endsWith("*"))for(a=a.substring(0,a.length-1);0<=--h;)this.panelNodes.get(h).fileName.startsWith(a)&&
c.addLast(this.panelNodes.get(h).source);else if(a.equalsIgnoreCase("selected"))for(a=null;0<=--h;)g=this.panelNodes.get(h).source,this.panelNodes.get(h).isSelected&&(null==a||a!==g)&&c.addLast(g),a=g;else if(g||e||a.equalsIgnoreCase("simulations"))for(a=0;0<=--h&&a<b;){if(g||(e?this.panelNodes.get(h).isView:this.panelNodes.get(h).isSimulation))c.addLast(this.panelNodes.get(h).source),a++}else g=0==a.length?this.currentSource:JSV.common.PanelNode.findSourceByNameOrId(a,this.panelNodes),null!=g&&c.addLast(g);
for(h=c.size();0<=--h;)this.closeSource(c.get(h));null==this.selectedPanel&&0<this.panelNodes.size()&&this.si.siSetSelectedPanel(JSV.common.PanelNode.getLastFileFirstNode(this.panelNodes))}},"~S");c(c$,"execLoad",function(a,b){var c=JSV.common.ScriptToken.getTokens(a),g=c.get(0),e=null,h=0;g.equalsIgnoreCase("ID")&&(e=JU.PT.trimQuotes(c.get(1)),g=c.get(2),h=2);var r=g.equalsIgnoreCase("APPEND"),j=g.equalsIgnoreCase("CHECK");(r||j)&&h++;0<h&&(g=c.get(h));null==b&&(b=this.defaultLoadScript);if(g.equals("?"))this.openFileFromDialog(r,
!1,null,b);else if(g.equals("http://?"))this.openFileFromDialog(r,!0,null,null);else if(g.equals("$?")||g.equals("$H1?"))this.openFileFromDialog(r,!0,"H1",null);else if(g.equals("$C13?"))this.openFileFromDialog(r,!0,"C13",null);else{var l=g.equalsIgnoreCase("MOL")||g.equalsIgnoreCase("H1"),k=g.equalsIgnoreCase("C13");if(l||k)g="http://SIMULATION/"+(l?"H1/":"C13/")+"MOL="+JU.PT.trimQuotes(c.get(++h));!j&&!r&&(g.equals('""')&&null!=this.currentSource&&(g=this.currentSource.getFilePath()),this.close("all"));
g=JU.PT.trimQuotes(g);if(j=g.startsWith("$"))!g.startsWith("$H1")&&!g.startsWith("$C13")&&(g="$H1/"+g.substring(1)),g="http://SIMULATION/"+g.substring(1);l=h+1<c.size()?Integer.$valueOf(c.get(++h)).intValue():-1;c=h+1<c.size()?Integer.$valueOf(c.get(++h)).intValue():l;this.si.siOpenDataOrFile(null,null,null,g,l,c,r,b,e);j&&(this.close("views"),this.execView("*",!0))}},"~S,~S");c(c$,"combineSpectra",function(a){for(var b=this.currentSource,c=b.getSpectra(),g=!1,e=c.size();0<=--e;)if(c.get(e).isSimulation){g=
!0;break}c=this.si.siGetNewJSVPanel2(c);c.setTitle(b.getTitle());c.getTitle().equals("")&&(c.getPanelData().setViewTitle(b.getFilePath()),c.setTitle(a));this.si.siSetPropertiesFromPreferences(c,!0);this.spectraTree.createTree(++this.fileCount,b,w(-1,[c])).getPanelNode().isView=!0;b=JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes);b.setFrameTitle(a);b.isView=!0;this.autoShowLegend&&1==this.pd().getNumberOfGraphSets()&&b.setLegend(this.getDialog(JSV.common.Annotation.AType.OverlayLegend,
null));this.si.siSetMenuEnables(b,!1);g&&this.pd().splitStack(!0)},"~S");c(c$,"closeSource",function(a){for(var b=this.spectraTree.getRootNode(),c=null==a?null:a.getFilePath(),g=new JU.Lst,b=b.children();b.hasMoreElements();){var e=b.nextElement();if(null==c||e.getPanelNode().source.matchesFilePath(c)){JU.Logger.info("Closing "+e.getPanelNode().source.getFilePath());for(var h=e.children();h.hasMoreElements();){var r=h.nextElement();g.addLast(r);this.panelNodes.removeObj(r.getPanelNode())}g.addLast(e);
if(null!=c)break}}this.spectraTree.deleteNodes(g);null==a&&(null!=this.currentSource&&this.currentSource.dispose(),this.currentSource=null,null!=this.selectedPanel&&this.selectedPanel.dispose());this.currentSource===a&&(this.si.siSetSelectedPanel(null),this.si.siSetCurrentSource(null));for(g=c=0;g<this.panelNodes.size();g++)b=JU.PT.parseFloat(this.panelNodes.get(g).id),b>=c+1&&(c=x(Math.floor(b)));this.fileCount=c;System.gc();JU.Logger.debugging&&JU.Logger.checkMemory();this.si.siSourceClosed(a)},
"JSV.source.JDXSource");c(c$,"setFrameAndTreeNode",function(a){null==this.panelNodes||(0>a||a>=this.panelNodes.size())||this.setNode(this.panelNodes.get(a))},"~N");c(c$,"selectFrameNode",function(a){a=JSV.common.PanelNode.findNode(a,this.panelNodes);if(null==a)return null;this.spectraTree.setPath(this.spectraTree.newTreePath(a.treeNode.getPath()));this.setOverlayLegendVisibility(null,!1);return a},"JSV.api.JSVPanel");c(c$,"setSpectrum",function(a){if(0<=a.indexOf(".")){a=JSV.common.PanelNode.findNodeById(a,
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this.panelNodes);this.si.siSetMenuEnables(a,!0)});c(c$,"selectedTreeNode",function(a){null!=a&&(a.isLeaf()?this.setNode(a.getPanelNode()):System.out.println("not a leaf"),this.si.siSetCurrentSource(a.getPanelNode().source))},"JSV.api.JSVTreeNode");c(c$,"dispose",function(){this.fileHelper=null;null!=this.viewDialog&&this.viewDialog.dispose();this.viewDialog=null;null!=this.overlayLegendDialog&&this.overlayLegendDialog.dispose();this.overlayLegendDialog=null;null!=this.jsvpPopupMenu&&(this.jsvpPopupMenu.jpiDispose(),
this.jsvpPopupMenu=null);if(null!=this.panelNodes)for(var a=this.panelNodes.size();0<=--a;)this.panelNodes.get(a).dispose(),this.panelNodes.removeItemAt(a)});c(c$,"runScript",function(a){null==this.scriptQueue?this.si.siProcessCommand(a):this.scriptQueue.addLast(a)},"~S");c(c$,"requestRepaint",function(){null!=this.selectedPanel&&this.repaintManager.refresh()});c(c$,"repaintDone",function(){this.repaintManager.repaintDone()});c(c$,"checkOverlay",function(){null!=this.mainPanel&&this.markSelectedPanels(this.panelNodes,
this.mainPanel.getCurrentPanelIndex());this.viewDialog=this.getDialog(JSV.common.Annotation.AType.Views,null)});c(c$,"markSelectedPanels",function(a,b){for(var c=a.size();0<=--c;)a.get(c).isSelected=b==c},"JU.Lst,~N");c(c$,"execOverlayOffsetY",function(a){if(-2147483648==a){if(null==this.selectedPanel)return;a=this.selectedPanel.getInput("Enter a vertical offset in percent for stacked plots","Overlay",""+this.recentStackPercent);a=JU.PT.parseFloat(a);if(Float.isNaN(a))return;a=G(a)}this.recentStackPercent=
a;this.parameters.viewOffset=a;this.isClosed()&&this.pd().setYStackOffsetPercent(a)},"~N");c(c$,"execScriptInline",function(a){0<a.length&&(a=a.substring(6).trim());0==a.length&&(a=this.selectedPanel.getInput("Enter a JSpecView script","Script",this.recentScript));null!=a&&(this.recentScript=a,this.runScriptNow(a))},"~S");c(c$,"setDisplay",function(a){this.apiPlatform.setViewer(this,this.display=a);var b=E(2,0);this.apiPlatform.getFullScreenDimensions(a,b);this.setScreenDimension(b[0],b[1])},"~O");
c(c$,"setScreenDimension",function(a,b){b=Math.min(b,this.maximumSize);a=Math.min(a,this.maximumSize);this.screenWidth==a&&this.screenHeight==b||this.resizeImage(a,b)},"~N,~N");c(c$,"resizeImage",function(a,b){0<a?(this.screenWidth=a,this.screenHeight=b):(a=0==this.screenWidth?this.screenWidth=500:this.screenWidth,b=0==this.screenHeight?this.screenHeight=500:this.screenHeight);this.g2d.setWindowParameters(a,b)},"~N,~N");c(c$,"updateJS",function(){null!=this.selectedPanel&&this.selectedPanel.paintComponent(this.apiPlatform.getGraphics(null))});
c(c$,"processMouseEvent",function(a,b,c,g,e){return null!=this.selectedPanel&&this.selectedPanel.processMouseEvent(a,b,c,g,e)},"~N,~N,~N,~N,~N");c(c$,"processTwoPointGesture",function(a){this.isClosed()||this.selectedPanel.processTwoPointGesture(a)},"~A");c(c$,"getApplet",function(){return this.html5Applet});c(c$,"openFileAsyncSpecial",function(a){var b=null==this.currentSource?"NO":this.getDialogManager().getDialogInput(this,"Do you want to append this file? (Answer NO to replace.)","Drag/Drop Action",
3,null,null,"YES");null!=b&&(b=b.toLowerCase().startsWith("y")?"append":"",this.runScript("load "+b+' "'+a+'"'+(""===b?"":"; view *")))},"~S,~N");c(c$,"getHeight",function(){return this.screenHeight});c(c$,"getWidth",function(){return this.screenWidth});c(c$,"getPlatformInterface",function(a){return JSV.common.JSViewer.getInterface("JSV."+(JSV.common.JSViewer.isJS?"js2d.Js":"java.Awt")+a)},"~S");c(c$,"getDialogManager",function(){if(null!=this.dialogManager)return this.dialogManager;this.dialogManager=
this.getPlatformInterface("DialogManager");return this.dialogManager.set(this)});c(c$,"getDialog",function(a,b){switch(a){case JSV.common.Annotation.AType.Integration:return JSV.common.JSViewer.getInterface("JSV.dialog.IntegrationDialog").setParams("Integration for "+b,this,b);case JSV.common.Annotation.AType.Measurements:return JSV.common.JSViewer.getInterface("JSV.dialog.MeasurementsDialog").setParams("Measurements for "+b,this,b);case JSV.common.Annotation.AType.PeakList:return JSV.common.JSViewer.getInterface("JSV.dialog.PeakListDialog").setParams("Peak List for "+
b,this,b);case JSV.common.Annotation.AType.OverlayLegend:return this.overlayLegendDialog=JSV.common.JSViewer.getInterface("JSV.dialog.OverlayLegendDialog").setParams(this.pd().getViewTitle(),this,null);case JSV.common.Annotation.AType.Views:return this.viewDialog=JSV.common.JSViewer.getInterface("JSV.dialog.ViewsDialog").setParams("View/Combine/Close Spectra",this,null);default:return null}},"JSV.common.Annotation.AType,JSV.common.Spectrum");c(c$,"show",function(a){this.getDialogManager();if(a.equals("properties"))this.dialogManager.showProperties(null,
this.pd().getSpectrum());else if(a.equals("errors"))this.dialogManager.showSourceErrors(null,this.currentSource);else if(a.equals("source"))null==this.currentSource?0<this.panelNodes.size()&&this.dialogManager.showMessageDialog(null,"Please Select a Spectrum","Select Spectrum",0):this.dialogManager.showSource(this,this.pd().getSpectrum());else if(a.startsWith("solutioncolorfill"))if(0<=a.indexOf("all"))for(var b=this.panelNodes.size();0<=--b;)this.panelNodes.get(b).pd().setSolutionColor(a);else this.pd().setSolutionColor(a);
else a.startsWith("solutioncolor")&&(a=this.getSolutionColorStr(0>a.indexOf("false")),a="background-color:rgb("+a+")'><br />Predicted Solution Colour- RGB("+a+")<br /><br />",JSV.common.JSViewer.isJS?this.dialogManager.showMessage(this,"<div style='width:100%;height:100%;"+a+"</div>","Predicted Colour"):this.selectedPanel.showMessage("<html><body style='"+a+"</body></html>","Predicted Colour"))},"~S");c(c$,"getDialogPrint",function(a){if(!JSV.common.JSViewer.isJS)try{var b=this.getPlatformInterface("PrintDialog").set(this.offWindowFrame,
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c(c$,"print",function(a){return this.execWrite('PDF "'+a+'"')},"~S");c(c$,"execWrite",function(a){JSV.common.JSViewer.isJS&&null==a&&(a="PDF");a=JSV.common.JSViewer.getInterface("JSV.export.Exporter").write(this,null==a?null:JSV.common.ScriptToken.getTokens(a),!1);this.si.writeStatus(a);return a},"~S");c(c$,"$export",function(a,b){null==a&&(a="XY");var c=this.pd(),g=c.getNumberOfSpectraInCurrentSet();if(-1>b||b>=g)return"Maximum spectrum index (0-based) is "+(g-1)+".";c=0>b?c.getSpectrum():c.getSpectrumAt(b);
try{return JSV.common.JSViewer.getInterface("JSV.export.Exporter").exportTheSpectrum(this,JSV.common.ExportType.getType(a),null,c,0,c.getXYCoords().length-1,null,a.equalsIgnoreCase("PDF"))}catch(e){if(y(e,Exception))return JU.Logger.error(e.toString()),null;throw e;}},"~S,~N");e(c$,"postByteArray",function(a,b){return JSV.common.JSVFileManager.postByteArray(a,b)},"~S,~A");c(c$,"getOutputChannel",function(a,b){for(;a.startsWith("/");)a=a.substring(1);return(new JU.OC).setParams(this,a,!b,null)},"~S,~B");
c$.getInterface=c(c$,"getInterface",function(a){try{var b=Y._4Name(a);return null==b?null:b.newInstance()}catch(c){if(y(c,Exception))return JU.Logger.error("Interface.java Error creating instance for "+a+": \n"+c),null;throw c;}},"~S");c(c$,"showMessage",function(a){null!=this.selectedPanel&&null!=a&&this.selectedPanel.showMessage(a,null)},"~S");c(c$,"openFileFromDialog",function(a,b,c,g){var e=null;if(null!=c){e=this.fileHelper.getUrlFromDialog("Enter the name or identifier of a compound",this.recentSimulation);
if(null==e)return;this.recentSimulation=e;e="$"+c+"/"+e}else if(b){e=this.fileHelper.getUrlFromDialog("Enter the URL of a JCAMP-DX File",null==this.recentURL?this.recentOpenURL:this.recentURL);if(null==e)return;this.recentOpenURL=e}else b=w(-1,[Boolean.$valueOf(a),g]),b=this.fileHelper.showFileOpenDialog(this.mainPanel,b),null!=b&&(e=b.getFullPath());null!=e&&this.runScriptNow("load "+(a?"APPEND ":"")+'"'+e+'"'+(null==g?"":";"+g))},"~B,~B,~S,~S");c(c$,"openFile",function(a,b){if(b&&null!=this.panelNodes){var c=
JSV.common.PanelNode.findSourceByNameOrId((new java.io.File(a)).getAbsolutePath(),this.panelNodes);null!=c&&this.closeSource(c)}this.si.siOpenDataOrFile(null,null,null,a,-1,-1,!0,this.defaultLoadScript,null)},"~S,~B");c(c$,"selectPanel",function(a,b){var c=-1;if(null!=b){for(var g=b.size();0<=--g;){var e=b.get(g).jsvp;e===a?c=g:(e.setEnabled(!1),e.setFocusable(!1),e.getPanelData().closeAllDialogsExcept(JSV.common.Annotation.AType.NONE))}this.markSelectedPanels(b,c)}return c},"JSV.api.JSVPanel,JU.Lst");
c(c$,"checkAutoIntegrate",function(){this.autoIntegrate&&this.pd().integrateAll(this.parameters)});c(c$,"parseInitScript",function(a){null==a&&(a="");a=new JSV.common.ScriptTokenizer(a,!0);for(JU.Logger.debugging&&JU.Logger.info("Running in DEBUG mode");a.hasMoreTokens();){var b=a.nextToken(),c=new JSV.common.ScriptTokenizer(b,!1),g=c.nextToken();g.equalsIgnoreCase("SET")&&(g=c.nextToken());var g=g.toUpperCase(),e=JSV.common.ScriptToken.getScriptToken(g),b=JSV.common.ScriptToken.getValue(e,c,b);JU.Logger.info("KEY-> "+
g+" VALUE-> "+b+" : "+e);try{switch(e){default:this.parameters.set(null,e,b);break;case JSV.common.ScriptToken.UNKNOWN:break;case JSV.common.ScriptToken.APPLETID:this.fullName=this.appletName+"__"+(this.appletName=b)+"__";g=null;self.Jmol&&(g=Jmol._applets[b]);this.html5Applet=g;break;case JSV.common.ScriptToken.AUTOINTEGRATE:this.autoIntegrate=JSV.common.Parameters.isTrue(b);break;case JSV.common.ScriptToken.COMPOUNDMENUON:break;case JSV.common.ScriptToken.APPLETREADYCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.COORDCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.LOADFILECALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.PEAKCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.SYNCCALLBACKFUNCTIONNAME:this.si.siExecSetCallback(e,
b);break;case JSV.common.ScriptToken.ENDINDEX:this.initialEndIndex=Integer.parseInt(b);break;case JSV.common.ScriptToken.INTERFACE:this.checkOvelayInterface(b);break;case JSV.common.ScriptToken.IRMODE:this.setIRmode(b);break;case JSV.common.ScriptToken.MENUON:this.allowMenu=Boolean.parseBoolean(b);break;case JSV.common.ScriptToken.OBSCURE:null==this.obscureTitleFromUser&&(this.obscureTitleFromUser=Boolean.$valueOf(b));break;case JSV.common.ScriptToken.STARTINDEX:this.initialStartIndex=Integer.parseInt(b);
break;case JSV.common.ScriptToken.SYNCID:this.fullName=this.appletName+"__"+(this.syncID=b)+"__"}}catch(h){if(!y(h,Exception))throw h;}}},"~S");c(c$,"getSolutionColorStr",function(a){a=JU.CU.colorPtFromInt(this.getSolutionColor(a),null);return G(a.x)+","+G(a.y)+","+G(a.z)},"~B");c(c$,"checkCommandLineForTip",function(a,b,c){var g="\u0001"==a;if(!g&&"\x00"!=a){if("\t"!=a&&("\n"==a||32>a.charCodeAt(0)||126<a.charCodeAt(0)))return null;b+=Character.isISOControl(a)?"":""+a}var e;0<=b.indexOf(";")&&(b=
b.substring(b.lastIndexOf(";")+1));for(var h=null;b.startsWith(" ");)b=b.substring(1);if(0==b.length&&!g)e="";else{e=JSV.common.ScriptToken.getTokens(b);if(0==e.size()&&!g)return"";b=b.endsWith(" ")||1<e.size()&&c;e=JSV.common.ScriptToken.getScriptTokenList(0==e.size()?null:e.get(0),b);switch(e.size()){case 0:e="?";break;case 1:g=e.get(0);e=g.getTip();try{e=0<=e.indexOf("TRUE")?" ("+this.parameters.getBoolean(g)+")":0<=g.name().indexOf("COLOR")?" ("+JU.CU.toRGBHexString(this.parameters.getElementColor(g))+
")":""}catch(r){if(y(r,Exception))return null;throw r;}if("\t"==a||b||!c){e=g.name()+" "+g.getTip()+e+" "+g.getDescription();"\t"==a&&(h=g.name()+" ");break}e=g.name()+" "+e;break;default:e=JSV.common.ScriptToken.getNameList(e)}}c?this.si.writeStatus(e):h=e;return h},"~S,~S,~B");c(c$,"checkScript",function(a){return this.checkCommandLineForTip("\x00",a,!1)},"~S");c(c$,"execHelp",function(a){var b=this.checkCommandLineForTip("\u0001",a,!1);if(0>b.indexOf(" ")&&0<b.indexOf(",")){var c=JU.PT.split(b,
",");java.util.Arrays.sort(c);for(var b="",g=0;g<c.length;g++)var e=JSV.common.ScriptToken.getScriptToken(c[g]),b=b+(c[g]+" "+e.getTip()+"\n  "+e.getDescription()+"\n\n");this.getDialogManager().showMessage(null,b,"HELP "+a)}else this.selectedPanel.showMessage(b,"Help "+a);System.out.println(b)},"~S");D(c$,"sourceLabel","Original...","FILE_OPEN_OK",0,"FILE_OPEN_ALREADY",-1,"FILE_OPEN_ERROR",-3,"FILE_OPEN_NO_DATA",-4,"OVERLAY_DIALOG",-1,"OVERLAY_OFFSET",99,"PORTRAIT",1,"PAGE_EXISTS",0,"NO_SUCH_PAGE",
1,"testScript",'<PeakData  index="1" title="" model="~1.1" type="1HNMR" xMin="3.2915" xMax="3.2965" atoms="15,16,17,18,19,20" multiplicity="" integral="1"> src="JPECVIEW" file="http://SIMULATION/$caffeine"',"NLEVEL_MAX",100,"isJS",!1,"isSwingJS",!1,"jmolObject",null)});s("JSV.common");t(["JSV.common.Annotation","$.Coordinate"],"JSV.common.Measurement",null,function(){c$=k(function(){this.pt2=null;this.value=0;m(this,arguments)},JSV.common,"Measurement",JSV.common.Annotation);F(c$,function(){this.pt2=
new JSV.common.Coordinate});c(c$,"setM1",function(a,b,c){this.setA(a,b,c,"",!1,!1,0,6);this.setPt2(this.getXVal(),this.getYVal());return this},"~N,~N,JSV.common.Spectrum");c(c$,"copyM",function(){var a=new JSV.common.Measurement;a.setA(this.getXVal(),this.getYVal(),this.spec,this.text,!1,!1,this.offsetX,this.offsetY);a.setPt2(this.pt2.getXVal(),this.pt2.getYVal());return a});c(c$,"setPt2",function(a,b){this.spec=a;b&&this.setPt2(this.getXVal(),this.getYVal());return this},"JSV.common.Spectrum,~B");
c(c$,"setPt2",function(a,b){this.pt2.setXVal(a);this.pt2.setYVal(b);this.value=Math.abs(a-this.getXVal());this.text=this.spec.setMeasurementText(this)},"~N,~N");c(c$,"getSpectrum",function(){return this.spec});c(c$,"setValue",function(a){this.value=a;this.text=this.spec.setMeasurementText(this)},"~N");c(c$,"getValue",function(){return this.value});c(c$,"getXVal2",function(){return this.pt2.getXVal()});c(c$,"getYVal2",function(){return this.pt2.getYVal()});e(c$,"addSpecShift",function(a){this.setXVal(this.getXVal()+
a);this.pt2.setXVal(this.pt2.getXVal()+a)},"~N");c(c$,"setYVal2",function(a){this.pt2.setYVal(a)},"~N");c(c$,"overlaps",function(a,b){return Math.min(this.getXVal(),this.getXVal2())<Math.max(a,b)&&Math.max(this.getXVal(),this.getXVal2())>Math.min(a,b)},"~N,~N");e(c$,"toString",function(){return"["+this.getXVal()+","+this.pt2.getXVal()+"]"});D(c$,"PT_XY1",1,"PT_XY2",2,"PT_INT_LABEL",-5,"PT_ON_LINE1",-1,"PT_ON_LINE2",-2,"PT_ON_LINE",0)});s("JSV.common");t(["JU.Lst","JSV.api.AnnotationData"],"JSV.common.MeasurementData",
["JU.AU","$.DF","JSV.common.Annotation","$.Parameters"],function(){c$=k(function(){this.units=this.spec=this.type=null;this.precision=0;this.myParams=null;this.isON=!0;this.key=null;m(this,arguments)},JSV.common,"MeasurementData",JU.Lst,JSV.api.AnnotationData);n(c$,function(a,b){z(this,JSV.common.MeasurementData,[]);this.type=a;this.spec=b;this.myParams=(new JSV.common.Parameters).setName("MeasurementData")},"JSV.common.Annotation.AType,JSV.common.Spectrum");c(c$,"getMeasurements",function(){return this});
e(c$,"getAType",function(){return this.type});e(c$,"getState",function(){return this.isON});e(c$,"setState",function(a){this.isON=a},"~B");c(c$,"setMeasurements",function(){},"JU.Lst");e(c$,"getParameters",function(){return this.myParams});c(c$,"getDataHeader",function(){return JSV.common.MeasurementData.HEADER});c(c$,"getMeasurementListArray",function(a){this.units=a;var b=this.getMeasurementListArrayReal(a),c=this.spec.isNMR()?4:2;a=this.spec.isHNMR()&&a.equals("ppm")?4:2;for(var g=Array(this.size()),
e=this.size();0<=--e;)g[e]=w(-1,[""+(e+1),JU.DF.formatDecimalDbl(b[e][0],c),JU.DF.formatDecimalDbl(b[e][1],c),JU.DF.formatDecimalDbl(b[e][2],a)]);return g},"~S");c(c$,"getMeasurementListArrayReal",function(a){a=this.spec.isNMR()&&a.equalsIgnoreCase("HZ");for(var b=JU.AU.newDouble2(this.size()),c=0,g=this.size();0<=--g;){var e=this.get(g).getValue();a&&(e*=this.spec.observedFreq);b[c++]=L(-1,[this.get(g).getXVal(),this.get(g).getXVal2(),e])}return b},"~S");c$.checkParameters=c(c$,"checkParameters",
function(a,b){if(0==a.size())return!1;var c=a.getParameters();switch(a.getAType()){case JSV.common.Annotation.AType.PeakList:return b.peakListInterpolation.equals(c.peakListInterpolation)&&b.peakListThreshold==c.peakListThreshold}return!1},"JSV.common.MeasurementData,JSV.common.ColorParameters");e(c$,"getSpectrum",function(){return this.spec});e(c$,"getData",function(){return this});c(c$,"clear",function(a,b){for(var c=this.size();0<=--c;){var g=this.get(c);(0==g.text.length||g.overlaps(a,b))&&this.removeItemAt(c)}},
"~N,~N");c(c$,"find",function(a){for(var b=this.size();0<=--b;)if(this.get(b).overlaps(a,a))return b;return-1},"~N");e(c$,"setSpecShift",function(a){for(var b=this.size();0<=--b;){var c=this.get(b),g=c.getXVal()+a;c.setXVal(g);c.setValue(g);c.text=JU.DF.formatDecimalDbl(g,this.precision)}},"~N");e(c$,"getGraphSetKey",function(){return this.key});e(c$,"setGraphSetKey",function(a){this.key=a},"~S");e(c$,"isVisible",function(){return!0});c(c$,"getInfo",function(a){a.put("header",this.getDataHeader());
a.put("table",this.getMeasurementListArrayReal("ppm"));null!=this.units&&a.put("units",this.units)},"java.util.Map");e(c$,"isDialog",function(){return!1});c$.HEADER=c$.prototype.HEADER=w(-1,["","start","end","value"])});s("JSV.common");t(["java.lang.Enum","J.api.EventManager","java.util.Hashtable","JU.Lst"],"JSV.common.PanelData","java.lang.Boolean $.Double JU.CU JSV.common.Annotation $.Coordinate $.GraphSet $.JSVFileManager $.JSVersion $.JSViewer $.MeasurementData $.Parameters $.PeakPickEvent $.ScriptToken $.Spectrum $.SubSpecChangeEvent $.ZoomEvent JSV.dialog.JSVDialog J.api.GenericGraphics JU.Font $.Logger".split(" "),
function(){c$=k(function(){this.graphSets=this.jsvp=this.options=this.currentGraphSet=this.listeners=this.vwr=this.g2d0=this.g2d=null;this.currentSplitPoint=0;this.coordsClicked=this.coordClicked=this.thisWidget=null;this.isIntegralDrag=this.drawXAxisLeftToRight=this.shiftPressed=this.ctrlPressed=!1;this.xAxisLeftToRight=!0;this.scalingFactor=1;this.integralShiftMode=0;this.left=60;this.right=50;this.coordStr="";this.startupPinTip="Click to set.";this.title=null;this.endIndex=this.startIndex=this.thisHeight=
this.thisWidth=this.nSpectra=this.clickCount=0;this.titleFontName=this.displayFontName=this.viewTitle=this.commonFilePath=null;this.isPrinting=!1;this.doReset=!0;this.printingFontName=null;this.printGraphPosition="default";this.isLinked=this.display1D=this.titleDrawn=!1;this.spectra=this.printJobTitle=null;this.taintedAll=!0;this.testingJavaScript=!1;this.mouseState=this.currentFont=null;this.peakTabsOn=this.titleOn=this.gridOn=!1;this.mouseY=this.mouseX=0;this.linking=!1;this.xPixelClicked=0;this.gMain=
this.optionsSaved=this.bgcolor=this.BLACK=this.zoomBoxColor2=this.zoomBoxColor=this.highlightColor=this.unitsColor=this.titleColor=this.scaleColor=this.plotAreaColor=this.peakTabColor=this.integralPlotColor=this.gridColor=this.coordinatesColor=null;m(this,arguments)},JSV.common,"PanelData",null,J.api.EventManager);F(c$,function(){this.listeners=new JU.Lst;this.options=new java.util.Hashtable});n(c$,function(a,b){this.vwr=b;this.jsvp=a;this.g2d=this.g2d0=b.g2d;this.BLACK=this.g2d.getColor1(0);this.highlightColor=
this.g2d.getColor4(255,0,0,200);this.zoomBoxColor=this.g2d.getColor4(150,150,100,130);this.zoomBoxColor2=this.g2d.getColor4(150,100,100,130)},"JSV.api.JSVPanel,JSV.common.JSViewer");c(c$,"addListener",function(a){this.listeners.contains(a)||this.listeners.addLast(a)},"JSV.api.PanelListener");c(c$,"getCurrentGraphSet",function(){return this.currentGraphSet});c(c$,"dispose",function(){this.jsvp=null;for(var a=0;a<this.graphSets.size();a++)this.graphSets.get(a).dispose();this.listeners=this.options=
this.thisWidget=this.coordsClicked=this.coordClicked=this.currentGraphSet=this.currentFont=this.graphSets=null});c(c$,"setViewTitle",function(a){this.viewTitle=a},"~S");c(c$,"getViewTitle",function(){return null==this.viewTitle?this.getTitle():this.viewTitle});c(c$,"getInfo",function(a,b){var c=new java.util.Hashtable,g=null;if(a)return this.currentGraphSet.getInfo(b,this.getCurrentSpectrumIndex());var e=this.options.entrySet();if("".equals(b)){for(var g="type title nSets ",h,e=e.iterator();e.hasNext()&&
((h=e.next())||1);)g+=h.getKey().name()+" ";c.put("KEYS",g)}else{for(e=e.iterator();e.hasNext()&&((h=e.next())||1);)JSV.common.Parameters.putInfo(b,c,h.getKey().name(),h.getValue());JSV.common.Parameters.putInfo(b,c,"type",this.getSpectrumAt(0).getDataType());JSV.common.Parameters.putInfo(b,c,"title",this.title);JSV.common.Parameters.putInfo(b,c,"nSets",Integer.$valueOf(this.graphSets.size()))}g=new JU.Lst;for(h=this.graphSets.size();0<=--h;)g.addLast(this.graphSets.get(h).getInfo(b,-1));c.put("sets",
g);return c},"~B,~S");c(c$,"setBooleans",function(a,b){if(null==b)for(var c,g=a.getBooleans().entrySet().iterator();g.hasNext()&&((c=g.next())||1);)this.setBooleans(a,c.getKey());else this.setBoolean(b,a.getBoolean(b))},"JSV.common.Parameters,JSV.common.ScriptToken");c(c$,"setBoolean",function(a,b){this.setTaintedAll();if(a===JSV.common.ScriptToken.REVERSEPLOT)this.currentGraphSet.setReversePlot(b);else switch(this.options.put(a,Boolean.$valueOf(b)),a){case JSV.common.ScriptToken.DISPLAY1D:case JSV.common.ScriptToken.DISPLAY2D:this.doReset=
!0}},"JSV.common.ScriptToken,~B");c(c$,"getBoolean",function(a){if(a===JSV.common.ScriptToken.REVERSEPLOT)return this.currentGraphSet.reversePlot;if(null==this.options)return!1;a=this.options.get(a);return null!=a&&v(a,Boolean)&&a===Boolean.TRUE},"JSV.common.ScriptToken");c(c$,"setFontName",function(a,b){switch(a){case JSV.common.ScriptToken.DISPLAYFONTNAME:this.displayFontName=b;break;case JSV.common.ScriptToken.TITLEFONTNAME:this.titleFontName=b}null!=b&&this.options.put(a,b)},"JSV.common.ScriptToken,~S");
c(c$,"getDisplay1D",function(){return this.display1D});c(c$,"setTaintedAll",function(){this.taintedAll=!0});c(c$,"initOne",function(a){this.spectra=new JU.Lst;this.spectra.addLast(a);this.initMany(this.spectra,0,0)},"JSV.common.Spectrum");c(c$,"initMany",function(a,b,c){this.startIndex=b;this.endIndex=c;this.nSpectra=a.size();this.spectra=a;this.commonFilePath=a.get(0).getFilePath();for(b=0;b<this.nSpectra;b++)if(!this.commonFilePath.equalsIgnoreCase(a.get(b).getFilePath())){this.commonFilePath=null;
break}this.setGraphSets(JSV.common.PanelData.LinkMode.NONE)},"JU.Lst,~N,~N");c(c$,"setGraphSets",function(a){this.graphSets=JSV.common.GraphSet.createGraphSetsAndSetLinkMode(this,this.jsvp,this.spectra,this.startIndex,this.endIndex,a);this.currentGraphSet=this.graphSets.get(0);this.title=this.getSpectrum().getTitleLabel()},"JSV.common.PanelData.LinkMode");c(c$,"findMatchingPeakInfo",function(a){for(var b=null,c=0;c<this.graphSets.size()&&null==(b=this.graphSets.get(c).findMatchingPeakInfo(a));c++);
return b},"JSV.common.PeakInfo");c(c$,"integrateAll",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).integrate(-1,a)},"JSV.common.ColorParameters");c(c$,"getNumberOfGraphSets",function(){return this.graphSets.size()});c(c$,"getTitle",function(){return this.title});c(c$,"refresh",function(){this.doReset=!0});c(c$,"addAnnotation",function(a){a=this.currentGraphSet.addAnnotation(a,this.getTitle());null!=a&&(this.title=a)},"JU.Lst");c(c$,"addPeakHighlight",function(a){for(var b=
0;b<this.graphSets.size();b++)this.graphSets.get(b).addPeakHighlight(a)},"JSV.common.PeakInfo");c(c$,"selectPeakByFileIndex",function(a,b,c){var g=this.currentGraphSet.selectPeakByFileIndex(a,b,c);if(null==g)for(var e=this.graphSets.size();0<=--e&&!(this.graphSets.get(e)!==this.currentGraphSet&&null!=(g=this.graphSets.get(e).selectPeakByFileIndex(a,b,c))););return g},"~S,~S,~S");c(c$,"setPlotColors",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).setPlotColors(a)},"~A");
c(c$,"selectSpectrum",function(a,b,c,g){g&&this.currentGraphSet.selectSpectrum(a,b,c);if("ID".equals(b))this.jumpToSpectrumIndex(this.getCurrentSpectrumIndex(),!0);else for(g=0;g<this.graphSets.size();g++)this.graphSets.get(g)!==this.currentGraphSet&&this.graphSets.get(g).selectSpectrum(a,b,c)},"~S,~S,~S,~B");c(c$,"hasFileLoaded",function(a){for(var b=this.graphSets.size();0<=--b;)if(this.graphSets.get(b).hasFileLoaded(a))return!0;return!1},"~S");c(c$,"clearAllView",function(){for(var a=this.graphSets.size();0<=
--a;)this.graphSets.get(a).resetViewCompletely()});c(c$,"drawGraph",function(a,b,c,g,e,h){var r;this.gMain=a;this.display1D=!this.isLinked&&this.getBoolean(JSV.common.ScriptToken.DISPLAY1D);var j=40,l=50,k=this.isPrinting||this.doReset||this.thisWidth!=g||this.thisHeight!=e;k&&this.setTaintedAll();this.taintedAll&&this.g2d.fillBackground(c,this.bgcolor);b!==a&&(this.g2d.fillBackground(b,null),a!==c&&this.g2d.fillBackground(a,null),this.g2d.setStrokeBold(a,!1));this.isPrinting?(j*=3,l*=3,this.scalingFactor=
10,r=!1):(this.scalingFactor=1,r=this.getBoolean(JSV.common.ScriptToken.COORDINATESON),this.titleOn=this.getBoolean(JSV.common.ScriptToken.TITLEON),this.gridOn=this.getBoolean(JSV.common.ScriptToken.GRIDON),this.peakTabsOn=this.getBoolean(JSV.common.ScriptToken.PEAKTABSON));var m=this.getBoolean(JSV.common.ScriptToken.POINTSONLY);this.titleDrawn=this.doReset=!1;this.thisWidth=g;this.thisHeight=e;for(var n=this.graphSets.size();0<=--n;)this.graphSets.get(n).drawGraphSet(a,b,c,g,e,this.left,this.right,
j,l,k,this.taintedAll,m);this.titleOn&&(!this.titleDrawn&&this.taintedAll)&&this.drawTitle(a,e*this.scalingFactor,g*this.scalingFactor,this.getDrawTitle(this.isPrinting));r&&null!=this.coordStr&&this.drawCoordinates(b,j,this.thisWidth-this.right,j-20);h&&this.taintedAll&&this.printFilePath(a,this.left,e,null!=this.commonFilePath?this.commonFilePath:1==this.graphSets.size()&&null!=this.currentGraphSet.getTitle(!0)?this.getSpectrum().getFilePath():null);this.isPrinting&&this.printVersion(a,e);!this.testingJavaScript&&
(this.isPrinting||a===b)?this.setTaintedAll():this.taintedAll=!1},"~O,~O,~O,~N,~N,~B");c(c$,"drawCoordinates",function(a,b,c,g){this.g2d.setGraphicsColor(a,this.coordinatesColor);b=this.setFont(a,this.jsvp.getWidth(),1,14,!0);this.g2d.drawString(a,this.coordStr,c-b.stringWidth(this.coordStr),g)},"~O,~N,~N,~N");c(c$,"setFont",function(a,b,c,g,e){return this.g2d.setFont(a,this.getFont(a,b,c,g,e))},"~O,~N,~N,~N,~B");c(c$,"printFilePath",function(a,b,c,g){if(null!=g){b*=this.scalingFactor;c*=this.scalingFactor;
0<g.indexOf("?")&&(g=g.substring(g.indexOf("?")+1));g=g.substring(g.lastIndexOf("/")+1);g=g.substring(g.lastIndexOf("\\")+1);this.g2d.setGraphicsColor(a,this.BLACK);var e=this.setFont(a,1E3,0,9,!0);b!=this.left*this.scalingFactor&&(b-=e.stringWidth(g));this.g2d.drawString(a,g,b,c-e.getHeight())}},"~O,~N,~N,~S");c(c$,"printVersion",function(a,b){this.g2d.setGraphicsColor(a,this.BLACK);var c=this.setFont(a,100,0,12,!0),g=this.jsvp.getApiPlatform().getDateFormat(null)+" JSpecView "+JSV.common.JSVersion.VERSION_SHORT,
e=c.stringWidth(g);this.g2d.drawString(a,g,(this.thisWidth-this.right)*this.scalingFactor-e,b*this.scalingFactor-3*c.getHeight())},"~O,~N");c(c$,"drawTitle",function(a,b,c,g){g=g.$replace("\n"," ");var e=this.getFont(a,c,this.isPrinting||this.getBoolean(JSV.common.ScriptToken.TITLEBOLDON)?1:0,14,!0),h=e.stringWidth(g);h>c&&(e=x(14*c/h),10>e&&(e=10),e=this.getFont(a,c,this.isPrinting||this.getBoolean(JSV.common.ScriptToken.TITLEBOLDON)?1:0,e,!0));this.g2d.setGraphicsColor(a,this.titleColor);this.setCurrentFont(this.g2d.setFont(a,
e));this.g2d.drawString(a,g,this.isPrinting?this.left*this.scalingFactor:5,b-x(e.getHeight()*(this.isPrinting?2:0.5)))},"~O,~N,~N,~S");c(c$,"setCurrentFont",function(a){this.currentFont=a},"JU.Font");c(c$,"getFontHeight",function(){return this.currentFont.getAscent()});c(c$,"getStringWidth",function(a){return this.currentFont.stringWidth(a)},"~S");c(c$,"selectFromEntireSet",function(a){for(var b=0,c=0;b<this.graphSets.size();b++)if(-2147483648==a)this.graphSets.get(b).setSelected(-1);else for(var g=
this.graphSets.get(b).spectra,e=0;e<g.size();e++,c++)(0>a||a==c)&&this.graphSets.get(b).setSelected(e)},"~N");c(c$,"addToList",function(a,b){for(var c=0;c<this.spectra.size();c++)(0>a||c==a)&&b.addLast(this.spectra.get(c))},"~N,JU.Lst");c(c$,"scaleSelectedBy",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).scaleSelectedBy(a)},"~N");c(c$,"setCurrentGraphSet",function(a,b){var c=1<a.nSplit?a.getSplitPoint(b):a.getCurrentSpectrumIndex(),g=this.currentGraphSet!==a,e=g||this.currentSplitPoint!=
c;this.currentGraphSet=a;this.currentSplitPoint=c;(g||1<a.nSplit&&e)&&this.setSpectrum(c,!0);if(!g){g=a.checkSpectrumClickedEvent(this.mouseX,this.mouseY,this.clickCount);if(!g)return!1;this.currentSplitPoint=c=a.getCurrentSpectrumIndex();this.setSpectrum(c,!0)}this.jumpToSpectrumIndex(c,g||1<a.nSplit&&e);return g},"JSV.common.GraphSet,~N");c(c$,"jumpToSpectrum",function(a){a=this.currentGraphSet.getSpectrumIndex(a);this.jumpToSpectrumIndex(a,!0)},"JSV.common.Spectrum");c(c$,"jumpToSpectrumIndex",
function(a,b){if(!(0>a||a>=this.currentGraphSet.nSpectra)){this.currentSplitPoint=a;b&&this.setSpectrum(this.currentSplitPoint,1<this.currentGraphSet.nSplit);var c=this.getSpectrum();this.notifySubSpectrumChange(c.getSubIndex(),c)}},"~N,~B");c(c$,"splitStack",function(a){this.currentGraphSet.splitStack(a)},"~B");c(c$,"getNumberOfSpectraInCurrentSet",function(){return this.currentGraphSet.nSpectra});c(c$,"getSourceID",function(){var a=this.getSpectrum().sourceID;return null==a?this.getSpectrumAt(0).sourceID:
a});c(c$,"getStartingPointIndex",function(a){return this.currentGraphSet.viewData.getStartingPointIndex(a)},"~N");c(c$,"getEndingPointIndex",function(a){return this.currentGraphSet.viewData.getEndingPointIndex(a)},"~N");c(c$,"haveSelectedSpectrum",function(){return this.currentGraphSet.haveSelectedSpectrum()});c(c$,"getShowAnnotation",function(a){return this.currentGraphSet.getShowAnnotation(a,-1)},"JSV.common.Annotation.AType");c(c$,"showAnnotation",function(a,b){this.currentGraphSet.setShowAnnotation(a,
b)},"JSV.common.Annotation.AType,Boolean");c(c$,"setYStackOffsetPercent",function(a){this.currentGraphSet.yStackOffsetPercent=a},"~N");c(c$,"setSpectrum",function(a,b){this.currentGraphSet.setSpectrum(a,b)},"~N,~B");c(c$,"getSpectrum",function(){return this.currentGraphSet.getSpectrum()});c(c$,"setSpecForIRMode",function(a){this.setTaintedAll();var b=this.currentGraphSet.getSpectrum();this.currentGraphSet.setSpectrumJDX(a);for(var c=0;c<this.spectra.size();c++)this.spectra.get(c)===b&&this.spectra.set(c,
a)},"JSV.common.Spectrum");c(c$,"isShowAllStacked",function(){return this.currentGraphSet.showAllStacked});c(c$,"getCurrentSpectrumIndex",function(){return this.currentGraphSet.getCurrentSpectrumIndex()});c(c$,"getSpectrumAt",function(a){return null==this.currentGraphSet?null:this.currentGraphSet.getSpectrumAt(a)},"~N");c(c$,"addHighlight",function(a,b,c,g,e,h,r,j){(null==a?this.currentGraphSet:a).addHighlight(b,c,g,this.g2d.getColor4(e,h,r,j))},"JSV.common.GraphSet,~N,~N,JSV.common.Spectrum,~N,~N,~N,~N");
c(c$,"removeHighlight",function(a,b){this.currentGraphSet.removeHighlight(a,b)},"~N,~N");c(c$,"removeAllHighlights",function(){this.currentGraphSet.removeAllHighlights()});c(c$,"setZoom",function(a,b,c,g){this.currentGraphSet.setZoom(a,b,c,g);this.doReset=!0;this.setTaintedAll();this.notifyListeners(new JSV.common.ZoomEvent)},"~N,~N,~N,~N");c(c$,"resetView",function(){this.currentGraphSet.resetView()});c(c$,"previousView",function(){this.currentGraphSet.previousView()});c(c$,"nextView",function(){this.currentGraphSet.nextView()});
c(c$,"getSelectedIntegral",function(){return this.currentGraphSet.getSelectedIntegral()});c(c$,"advanceSubSpectrum",function(a){this.currentGraphSet.advanceSubSpectrum(a)},"~N");c(c$,"setSelectedIntegral",function(a){this.currentGraphSet.setSelectedIntegral(a)},"~N");c(c$,"scaleYBy",function(a){this.currentGraphSet.scaleYBy(a)},"~N");c(c$,"toPeak",function(a){this.currentGraphSet.toPeak(a)},"~N");c(c$,"getClickedCoordinate",function(){return this.coordClicked});c(c$,"getPickedCoordinates",function(a,
b){return JSV.common.Coordinate.getPickedCoordinates(this.coordsClicked,this.coordClicked,a,b)},"JSV.common.Coordinate,JSV.common.Coordinate");c(c$,"shiftSpectrum",function(a,b,c){return this.currentGraphSet.shiftSpectrum(a,b,c)},"~N,~N,~N");c(c$,"findX",function(a,b){this.currentGraphSet.setXPointer(a,b)},"JSV.common.Spectrum,~N");c(c$,"setXPointers",function(a,b,c,g){this.currentGraphSet.setXPointer(a,b);this.currentGraphSet.setXPointer2(c,g)},"JSV.common.Spectrum,~N,JSV.common.Spectrum,~N");c(c$,
"isCurrentGraphSet",function(a){return a===this.currentGraphSet},"JSV.common.GraphSet");c(c$,"repaint",function(){this.jsvp.doRepaint(!1)});c(c$,"setToolTipText",function(a){this.jsvp.setToolTipText(a)},"~S");c(c$,"setHighlightColor",function(a){this.setColor(JSV.common.ScriptToken.HIGHLIGHTCOLOR,a)},"javajs.api.GenericColor");c(c$,"getInput",function(a,b,c){return this.jsvp.getInput(a,b,c)},"~S,~S,~S");c(c$,"getFont",function(a,b,c,g,e){g*=this.scalingFactor;e?400>b&&(g=b*g/400):250>b&&(g=b*g/250);
b=this.jsvp.getFontFaceID(this.isPrinting?this.printingFontName:this.displayFontName);return this.currentFont=JU.Font.createFont3D(b,c,g,g,this.jsvp.getApiPlatform(),a)},"~O,~N,~N,~N,~B");c(c$,"notifySubSpectrumChange",function(a,b){this.notifyListeners(new JSV.common.SubSpecChangeEvent(a,null==b?null:b.getTitleLabel()))},"~N,JSV.common.Spectrum");c(c$,"notifyPeakPickedListeners",function(a){null==a&&(a=new JSV.common.PeakPickEvent(this.jsvp,this.coordClicked,this.getSpectrum().getAssociatedPeakInfo(this.xPixelClicked,
this.coordClicked)));this.notifyListeners(a)},"JSV.common.PeakPickEvent");c(c$,"notifyListeners",function(a){for(var b=0;b<this.listeners.size();b++)null!=this.listeners.get(b)&&this.listeners.get(b).panelEvent(a)},"~O");c(c$,"escapeKeyPressed",function(a){this.currentGraphSet.escapeKeyPressed(a)},"~B");c(c$,"hasFocus",function(){return this.jsvp.hasFocus()});c(c$,"isMouseUp",function(){return this.mouseState===JSV.common.PanelData.Mouse.UP});c(c$,"doMouseMoved",function(a,b){this.mouseX=a;this.mouseY=
b;this.mouseState=JSV.common.PanelData.Mouse.UP;this.clickCount=0;var c=JSV.common.GraphSet.findGraphSet(this.graphSets,a,b);null!=c&&c.mouseMovedEvent(a,b)},"~N,~N");c(c$,"doMousePressed",function(a,b){this.mouseState=JSV.common.PanelData.Mouse.DOWN;var c=JSV.common.GraphSet.findGraphSet(this.graphSets,a,b);null!=c&&(this.setCurrentGraphSet(c,b),this.clickCount=++this.clickCount%3,this.currentGraphSet.mousePressedEvent(a,b,this.clickCount))},"~N,~N");c(c$,"doMouseDragged",function(a,b){this.isIntegralDrag=
(new Boolean(this.isIntegralDrag|this.ctrlPressed)).valueOf();this.mouseState=JSV.common.PanelData.Mouse.DOWN;JSV.common.GraphSet.findGraphSet(this.graphSets,a,b)===this.currentGraphSet&&(this.currentGraphSet.checkWidgetEvent(a,b,!1)&&this.setTaintedAll(),this.currentGraphSet.mouseMovedEvent(a,b))},"~N,~N");c(c$,"doMouseReleased",function(a,b,c){this.mouseState=JSV.common.PanelData.Mouse.UP;!(null==this.thisWidget&&null==this.currentGraphSet.pendingMeasurement)&&c&&(this.currentGraphSet.mouseReleasedEvent(a,
b),this.thisWidget=null,this.isIntegralDrag=!1,this.integralShiftMode=0)},"~N,~N,~B");c(c$,"doMouseClicked",function(a,b,c){var g=JSV.common.GraphSet.findGraphSet(this.graphSets,a,b);null!=g&&(this.setCurrentGraphSet(g,b),g.mouseClickedEvent(a,b,this.clickCount,c),this.setTaintedAll(),this.repaint())},"~N,~N,~B");c(c$,"hasCurrentMeasurements",function(a){return this.currentGraphSet.hasCurrentMeasurement(a)},"JSV.common.Annotation.AType");c(c$,"getDialog",function(a){return this.currentGraphSet.getDialog(a,
-1)},"JSV.common.Annotation.AType");c(c$,"addDialog",function(a,b,c){this.currentGraphSet.addDialog(a,b,c)},"~N,JSV.common.Annotation.AType,JSV.api.AnnotationData");c(c$,"getPeakListing",function(a,b){null!=a&&this.currentGraphSet.getPeakListing(-1,a,!0);this.currentGraphSet.setPeakListing(b)},"JSV.common.Parameters,Boolean");c(c$,"checkIntegral",function(a,b){this.currentGraphSet.checkIntegralParams(a,b)},"JSV.common.Parameters,~S");c(c$,"setIntegrationRatios",function(a){this.currentGraphSet.setIntegrationRatios(a)},
"~S");c(c$,"getView",function(){return this.currentGraphSet.getCurrentView()});c(c$,"closeAllDialogsExcept",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).closeDialogsExcept(a)},"JSV.common.Annotation.AType");c(c$,"removeDialog",function(a){this.currentGraphSet.removeDialog(a)},"JSV.dialog.JSVDialog");c(c$,"normalizeIntegral",function(){var a=this.getSelectedIntegral();if(null!=a){var b=a.text;0==b.length&&(b=""+a.getValue());a=this.getInput("Enter a new value for this integral",
"Normalize Integral",b);try{this.setSelectedIntegral(Double.parseDouble(a))}catch(c){if(!y(c,Exception))throw c;}}});c(c$,"getDrawTitle",function(a){var b=null;a?b=this.printJobTitle:1==this.nSpectra?b=this.getSpectrum().getPeakTitle():null!=this.viewTitle?(null!=this.currentGraphSet.getTitle(!1)&&(b=this.getSpectrum().getPeakTitle()),null==b&&(b=this.viewTitle)):b=this.jsvp.getTitle().trim();0<=b.indexOf("\n")&&(b=b.substring(0,b.indexOf("\n")).trim());return b},"~B");c(c$,"getPrintJobTitle",function(a){var b=
null;1==this.nSpectra?b=this.getSpectrum().getTitle():null!=this.viewTitle?(1==this.graphSets.size()&&(b=this.currentGraphSet.getTitle(a)),null==b&&(b=this.viewTitle)):b=this.jsvp.getTitle().trim();0<=b.indexOf("\n")?b=b.substring(0,b.indexOf("\n")).trim():b.startsWith("$")&&(b=b.substring(1));return b},"~B");c(c$,"linkSpectra",function(a){a===JSV.common.PanelData.LinkMode.ALL&&(a=2==this.nSpectra?JSV.common.PanelData.LinkMode.AB:3==this.nSpectra?JSV.common.PanelData.LinkMode.ABC:JSV.common.PanelData.LinkMode.NONE);
a!==JSV.common.PanelData.LinkMode.NONE&&a.toString().length!=this.nSpectra||this.setGraphSets(a)},"JSV.common.PanelData.LinkMode");c(c$,"doZoomLinked",function(a,b,c,g,e,h){if(!this.linking){this.linking=!0;for(var r=a.getSpectrumAt(0),j=this.graphSets.size();0<=--j;){var l=this.graphSets.get(j);l!==a&&JSV.common.Spectrum.areXScalesCompatible(r,this.graphSets.get(j).getSpectrumAt(0),!1,!0)&&l.doZoom(b,0,c,0,h,!1,e,!1,g)}this.linking=!1}},"JSV.common.GraphSet,~N,~N,~B,~B,~B");c(c$,"clearLinkViews",
function(a){if(!this.linking){this.linking=!0;for(var b=a.getSpectrum(),c=this.graphSets.size();0<=--c;){var g=this.graphSets.get(c);g!==a&&JSV.common.Spectrum.areXScalesCompatible(b,this.graphSets.get(c).getSpectrum(),!1,!0)&&g.clearViews()}this.linking=!1}},"JSV.common.GraphSet");c(c$,"setlinkedXMove",function(a,b,c){if(!this.linking){this.linking=!0;for(var g=a.getSpectrum(),e=this.graphSets.size();0<=--e;){var h=this.graphSets.get(e);h!==a&&JSV.common.Spectrum.areXScalesCompatible(g,this.graphSets.get(e).getSpectrum(),
!1,!0)&&null==h.imageView&&(c?h.setXPixelMovedTo(1.7976931348623157E308,b,0,0):h.setXPixelMovedTo(b,1.7976931348623157E308,0,0))}this.linking=!1}},"JSV.common.GraphSet,~N,~B");c(c$,"set2DCrossHairsLinked",function(a,b,c,g){for(var e=this.graphSets.size();0<=--e;){var h=this.graphSets.get(e);h!==a&&h.set2DXY(b,c,g)}},"JSV.common.GraphSet,~N,~N,~B");c(c$,"dialogsToFront",function(a){this.currentGraphSet.dialogsToFront(a)},"JSV.common.Spectrum");c(c$,"setColor",function(a,b){null!=b&&this.options.put(a,
JU.CU.toRGBHexString(b));switch(a){case JSV.common.ScriptToken.COORDINATESCOLOR:this.coordinatesColor=b;return;case JSV.common.ScriptToken.HIGHLIGHTCOLOR:this.highlightColor=b;255==this.highlightColor.getOpacity255()&&this.highlightColor.setOpacity255(150);return;case JSV.common.ScriptToken.ZOOMBOXCOLOR:this.zoomBoxColor=b;return;case JSV.common.ScriptToken.ZOOMBOXCOLOR2:this.zoomBoxColor2=b;return;case JSV.common.ScriptToken.BACKGROUNDCOLOR:this.jsvp.setBackgroundColor(this.bgcolor=b);break;case JSV.common.ScriptToken.GRIDCOLOR:this.gridColor=
b;break;case JSV.common.ScriptToken.INTEGRALPLOTCOLOR:this.integralPlotColor=b;break;case JSV.common.ScriptToken.PEAKTABCOLOR:this.peakTabColor=b;break;case JSV.common.ScriptToken.PLOTCOLOR:for(var c=this.graphSets.size();0<=--c;)this.graphSets.get(c).setPlotColor0(b);break;case JSV.common.ScriptToken.PLOTAREACOLOR:this.plotAreaColor=b;break;case JSV.common.ScriptToken.SCALECOLOR:this.scaleColor=b;break;case JSV.common.ScriptToken.TITLECOLOR:this.titleColor=b;break;case JSV.common.ScriptToken.UNITSCOLOR:this.unitsColor=
b;break;default:JU.Logger.warn("AwtPanel --- unrecognized color: "+a);return}this.taintedAll=!0},"JSV.common.ScriptToken,javajs.api.GenericColor");c(c$,"getColor",function(a){switch(a){default:return JU.Logger.error("awtgraphset missing color "+a),this.BLACK;case JSV.common.ScriptToken.ZOOMBOXCOLOR2:return this.zoomBoxColor2;case JSV.common.ScriptToken.ZOOMBOXCOLOR:return this.zoomBoxColor;case JSV.common.ScriptToken.HIGHLIGHTCOLOR:return this.highlightColor;case JSV.common.ScriptToken.INTEGRALPLOTCOLOR:return this.integralPlotColor;
case JSV.common.ScriptToken.GRIDCOLOR:return this.gridColor;case JSV.common.ScriptToken.PEAKTABCOLOR:return this.peakTabColor;case JSV.common.ScriptToken.PLOTAREACOLOR:return this.plotAreaColor;case JSV.common.ScriptToken.SCALECOLOR:return this.scaleColor;case JSV.common.ScriptToken.TITLECOLOR:return this.titleColor;case JSV.common.ScriptToken.UNITSCOLOR:return this.unitsColor}},"JSV.common.ScriptToken");c(c$,"getOverlayLegendData",function(){for(var a=this.currentGraphSet.nSpectra,b=Array(a),c=this.getSpectrumAt(0).getFilePath(),
g=this.getSpectrumAt(a-1).getFilePath(),c=null!=c&&null!=g&&!c.equals(g),g=0;g<a;g++){var e=Array(3),h=this.getSpectrumAt(g);this.title=h.getTitle();c&&(this.title=JSV.common.JSVFileManager.getTagName(h.getFilePath())+" - "+this.title);h=this.getCurrentPlotColor(g);e[0]=new Integer(g+1);e[1]=h;e[2]=" "+this.title;b[g]=e}return b});c(c$,"setColorOrFont",function(a,b){if(null==b){for(var c,g=a.elementColors.entrySet().iterator();g.hasNext()&&((c=g.next())||1);)this.setColorOrFont(a,c.getKey());this.setColorOrFont(a,
JSV.common.ScriptToken.DISPLAYFONTNAME);this.setColorOrFont(a,JSV.common.ScriptToken.TITLEFONTNAME)}else{switch(b){case JSV.common.ScriptToken.DISPLAYFONTNAME:this.setFontName(b,a.displayFontName);return;case JSV.common.ScriptToken.TITLEFONTNAME:this.setFontName(b,a.titleFontName);return}this.setColor(b,a.getElementColor(b))}},"JSV.common.ColorParameters,JSV.common.ScriptToken");c(c$,"getCurrentPlotColor",function(a){return this.currentGraphSet.getPlotColor(a)},"~N");c(c$,"setPrint",function(a,b){null==
a?(this.options.putAll(this.optionsSaved),this.optionsSaved=null):(this.printJobTitle=a.title,this.printingFontName=b,this.printGraphPosition=a.position,this.optionsSaved=new java.util.Hashtable,this.optionsSaved.putAll(this.options),this.gridOn=a.showGrid,this.titleOn=a.showTitle,this.setBoolean(JSV.common.ScriptToken.XSCALEON,a.showXScale),this.setBoolean(JSV.common.ScriptToken.XUNITSON,a.showXScale),this.setBoolean(JSV.common.ScriptToken.YSCALEON,a.showYScale),this.setBoolean(JSV.common.ScriptToken.YUNITSON,
a.showYScale))},"JSV.common.PrintLayout,~S");c(c$,"setDefaultPrintOptions",function(a){a.showGrid=this.gridOn;a.showXScale=this.getBoolean(JSV.common.ScriptToken.XSCALEON);a.showYScale=this.getBoolean(JSV.common.ScriptToken.YSCALEON);a.showTitle=this.titleOn},"JSV.common.PrintLayout");c(c$,"showDialog",function(a){var b=this.getDialog(a);this.closeAllDialogsExcept(a);if(null!=b&&v(b,JSV.dialog.JSVDialog))return b.reEnable();var c=this.getCurrentSpectrumIndex();if(0>c)return this.jsvp.showMessage("To enable "+
a+" first select a spectrum by clicking on it.",""+a),null;var g=this.getSpectrum(),e=this.vwr.getDialog(a,g);null==b&&a===JSV.common.Annotation.AType.Measurements&&(b=new JSV.common.MeasurementData(JSV.common.Annotation.AType.Measurements,g));null!=b&&e.setData(b);this.addDialog(c,a,e);e.reEnable();return e},"JSV.common.Annotation.AType");c(c$,"printPdf",function(a,b){var c=!b.layout.equals("landscape");this.print(a,c?b.imageableHeight:b.imageableWidth,c?b.imageableWidth:b.imageableHeight,b.imageableX,
b.imageableY,b.paperHeight,b.paperWidth,c,0)},"J.api.GenericGraphics,JSV.common.PrintLayout");c(c$,"print",function(a,b,c,e,f,h,r,j,l){this.g2d=this.g2d0;if(0==l)return this.isPrinting=!0,l=!1,v(a,J.api.GenericGraphics)&&(this.g2d=a,a=this.gMain),this.printGraphPosition.equals("default")?j?(b=450,c=280):(b=280,c=450):this.printGraphPosition.equals("fit to page")?l=!0:j?(b=450,c=280,e=x(x(r-c)/2),f=x(x(h-b)/2)):(b=280,c=450,f=x(x(r-280)/2),e=x(x(h-450)/2)),this.g2d.translateScale(a,e,f,0.1),this.setTaintedAll(),
this.drawGraph(a,a,a,x(c),x(b),l),this.isPrinting=!1,0;this.isPrinting=!1;return 1},"~O,~N,~N,~N,~N,~N,~N,~B,~N");e(c$,"keyPressed",function(a,b){if(this.isPrinting)return!1;this.checkKeyControl(a,!0);switch(a){case 27:case 127:case 8:return this.escapeKeyPressed(27!=a),this.isIntegralDrag=!1,this.setTaintedAll(),this.repaint(),!0}var c=0,e=!1;if(0==b)switch(a){case 37:case 39:this.doMouseMoved(39==a?++this.mouseX:--this.mouseX,this.mouseY);this.repaint();e=!0;break;case 33:case 34:c=33==a?JSV.common.GraphSet.RT2:
1/JSV.common.GraphSet.RT2;e=!0;break;case 40:case 38:e=40==a?-1:1,null==this.getSpectrumAt(0).getSubSpectra()?this.notifySubSpectrumChange(e,null):(this.advanceSubSpectrum(e),this.setTaintedAll(),this.repaint()),e=!0}else if(this.checkMod(a,2))switch(a){case 40:case 38:case 45:case 61:c=61==a||38==a?JSV.common.GraphSet.RT2:1/JSV.common.GraphSet.RT2;e=!0;break;case 37:case 39:this.toPeak(39==a?1:-1),e=!0}0!=c&&(this.scaleYBy(c),this.setTaintedAll(),this.repaint());return e},"~N,~N");e(c$,"keyReleased",
function(a){this.isPrinting||this.checkKeyControl(a,!1)},"~N");e(c$,"keyTyped",function(a,b){if(this.isPrinting)return!1;switch(a){case "n":if(0!=b)break;this.normalizeIntegral();return!0;case 26:if(2!=b)break;this.previousView();this.setTaintedAll();this.repaint();return!0;case 25:if(2!=b)break;this.nextView();this.setTaintedAll();this.repaint();return!0}return!1},"~N,~N");e(c$,"mouseAction",function(a,b,c,e,f,h){if(!this.isPrinting)switch(a){case 4:if(!this.checkMod(h,16))break;this.doMousePressed(c,
e);break;case 5:this.doMouseReleased(c,e,this.checkMod(h,16));this.setTaintedAll();this.repaint();break;case 1:this.doMouseDragged(c,e);this.repaint();break;case 0:this.jsvp.getFocusNow(!1);if(0!=(h&28)){this.doMouseDragged(c,e);this.repaint();break}this.doMouseMoved(c,e);null!=this.coordStr&&this.repaint();break;case 2:if(this.checkMod(h,4)){this.jsvp.showMenu(c,e);break}this.ctrlPressed=!1;this.doMouseClicked(c,e,this.updateControlPressed(h))}},"~N,~N,~N,~N,~N,~N");c(c$,"checkMod",function(a,b){return(a&
b)==b},"~N,~N");c(c$,"checkKeyControl",function(a,b){switch(a){case 17:case 157:this.ctrlPressed=b;break;case 16:this.shiftPressed=b}},"~N,~B");c(c$,"updateControlPressed",function(a){return this.ctrlPressed=(new Boolean(this.ctrlPressed|(this.checkMod(a,2)||this.checkMod(a,20)))).valueOf()},"~N");e(c$,"mouseEnterExit",function(a,b,c,e){if(e)this.thisWidget=null,this.isIntegralDrag=!1,this.integralShiftMode=0;else try{this.jsvp.getFocusNow(!1)}catch(f){if(y(f,Exception))System.out.println("pd "+this+
" cannot focus");else throw f;}},"~N,~N,~N,~B");c(c$,"setSolutionColor",function(a){var b=0<=a.indexOf("none"),c=0>a.indexOf("false");if(0>a.indexOf("all"))b=b?-1:this.vwr.getSolutionColor(c),this.getSpectrum().setFillColor(-1==b?null:this.vwr.parameters.getColor1(b));else{a=JSV.common.JSViewer.getInterface("JSV.common.Visible");for(var e=this.graphSets.size();0<=--e;)this.graphSets.get(e).setSolutionColor(a,b,c)}},"~S");c(c$,"setIRMode",function(a,b){for(var c=this.graphSets.size();0<=--c;)this.graphSets.get(c).setIRMode(a,
b)},"JSV.common.Spectrum.IRMode,~S");c(c$,"closeSpectrum",function(){this.vwr.close("views");this.vwr.close(this.getSourceID());this.vwr.execView("*",!0)});A(self.c$);c$=u(JSV.common.PanelData,"LinkMode",Enum);c$.getMode=c(c$,"getMode",function(a){if(a.equals("*"))return JSV.common.PanelData.LinkMode.ALL;for(var b,c=0,e=JSV.common.PanelData.LinkMode.values();c<e.length&&((b=e[c])||1);c++)if(b.name().equalsIgnoreCase(a))return b;return JSV.common.PanelData.LinkMode.NONE},"~S");q(c$,"ALL",0,[]);q(c$,
"NONE",1,[]);q(c$,"AB",2,[]);q(c$,"ABC",3,[]);c$=B();A(self.c$);c$=u(JSV.common.PanelData,"Mouse",Enum);q(c$,"UP",0,[]);q(c$,"DOWN",1,[]);c$=B();D(c$,"defaultPrintHeight",450,"defaultPrintWidth",280,"topMargin",40,"bottomMargin",50,"leftMargin",60,"rightMargin",50)});s("JSV.common");t(null,"JSV.common.PanelNode",["JU.SB","JSV.common.Parameters"],function(){c$=k(function(){this.legend=this.id=this.jsvp=this.fileName=this.source=this.treeNode=null;this.isSimulation=this.isView=this.isSelected=!1;this.frameTitle=
null;m(this,arguments)},JSV.common,"PanelNode");n(c$,function(a,b,c,e){this.id=a;this.source=c;this.fileName=b;this.isSimulation=0<=c.getFilePath().indexOf("http://SIMULATION/");this.jsvp=e;null!=e&&(this.pd().getSpectrumAt(0).setId(a),this.frameTitle=e.getTitle())},"~S,~S,JSV.source.JDXSource,JSV.api.JSVPanel");c(c$,"setTreeNode",function(a){this.treeNode=a},"JSV.api.JSVTreeNode");c(c$,"getTreeNode",function(){return this.treeNode});c(c$,"dispose",function(){this.source.dispose();null!=this.jsvp&&
this.jsvp.dispose();this.legend=this.jsvp=this.source=null});c(c$,"pd",function(){return this.jsvp.getPanelData()});c(c$,"getSpectrum",function(){return this.pd().getSpectrum()});c(c$,"setLegend",function(a){null!=this.legend&&this.legend.dispose();return this.legend=a},"JSV.dialog.JSVDialog");e(c$,"toString",function(){return(null==this.id?"":this.id+": ")+(null==this.frameTitle?this.fileName:this.frameTitle)});c$.findSourceByNameOrId=c(c$,"findSourceByNameOrId",function(a,b){for(var c=b.size();0<=
--c;){var e=b.get(c);if(a.equals(e.id)||a.equals(e.source.getSpectra().get(0).sourceID)||e.source.matchesFilePath(a))return e.source}for(c=b.size();0<=--c;)if(e=b.get(c),a.equals(e.fileName))return e.source;return null},"~S,JU.Lst");c$.findNodeById=c(c$,"findNodeById",function(a,b){if(null!=a)for(var c=b.size();0<=--c;)if(a.equals(b.get(c).id)||a.equals(b.get(c).frameTitle))return b.get(c);return null},"~S,JU.Lst");c$.findNode=c(c$,"findNode",function(a,b){for(var c=b.size();0<=--c;)if(b.get(c).jsvp===
a)return b.get(c);return null},"JSV.api.JSVPanel,JU.Lst");c$.getSpectrumListAsString=c(c$,"getSpectrumListAsString",function(a){for(var b=new JU.SB,c=0;c<a.size();c++){var e=a.get(c);e.isView||b.append(" ").append(e.id)}return b.toString().trim()},"JU.Lst");c$.isOpen=c(c$,"isOpen",function(a,b){if(null!=b)for(var c=a.size();0<=--c&&!a.get(c).source.matchesFilePath(b)&&!b.equals(a.get(c).frameTitle););return-1},"JU.Lst,~S");c(c$,"setFrameTitle",function(a){this.frameTitle=a},"~S");c$.getLastFileFirstNode=
c(c$,"getLastFileFirstNode",function(a){for(var b=a.size(),c=0==b?null:a.get(b-1),b=b-1;0<=--b&&a.get(b).source===c.source;)c=a.get(b);return null==c?null:c.jsvp},"JU.Lst");c(c$,"getInfo",function(a){var b=this.pd().getInfo(!1,a);JSV.common.Parameters.putInfo(a,b,"panelId",this.id);JSV.common.Parameters.putInfo(a,b,"panelFileName",this.fileName);JSV.common.Parameters.putInfo(a,b,"panelSource",this.source.getFilePath());return b},"~S")});s("JSV.common");t(null,"JSV.common.Parameters",["java.lang.Boolean",
"java.util.Hashtable","JSV.common.ScriptToken"],function(){c$=k(function(){this.name=null;this.integralMinY=0.1;this.integralRange=50;this.integralOffset=30;this.integralDrawAll=!1;this.viewOffset=0;this.peakListThreshold=NaN;this.peakListInterpolation="parabolic";this.precision=2;this.htBooleans=null;m(this,arguments)},JSV.common,"Parameters");n(c$,function(){this.htBooleans=new java.util.Hashtable;this.setBoolean(JSV.common.ScriptToken.TITLEON,!0);this.setBoolean(JSV.common.ScriptToken.ENABLEZOOM,
!0);this.setBoolean(JSV.common.ScriptToken.DISPLAY2D,!0);this.setBoolean(JSV.common.ScriptToken.COORDINATESON,!0);this.setBoolean(JSV.common.ScriptToken.PEAKTABSON,!0);this.setBoolean(JSV.common.ScriptToken.POINTSONLY,!1);this.setBoolean(JSV.common.ScriptToken.GRIDON,!0);this.setBoolean(JSV.common.ScriptToken.XSCALEON,!0);this.setBoolean(JSV.common.ScriptToken.YSCALEON,!0);this.setBoolean(JSV.common.ScriptToken.XUNITSON,!0);this.setBoolean(JSV.common.ScriptToken.YUNITSON,!0)});c(c$,"setName",function(a){this.name=
a;return this},"~S");c(c$,"getBooleans",function(){return this.htBooleans});c(c$,"setBoolean",function(a,b){this.htBooleans.put(a,Boolean.$valueOf(b));return b},"JSV.common.ScriptToken,~B");c(c$,"getBoolean",function(a){return Boolean.TRUE===this.htBooleans.get(a)},"JSV.common.ScriptToken");c$.isTrue=c(c$,"isTrue",function(a){return 0==a.length||Boolean.parseBoolean(a)},"~S");c$.getTFToggle=c(c$,"getTFToggle",function(a){return a.equalsIgnoreCase("TOGGLE")?null:JSV.common.Parameters.isTrue(a)?Boolean.TRUE:
Boolean.FALSE},"~S");c(c$,"setP",function(a,b,c){switch(b){default:return;case JSV.common.ScriptToken.COORDINATESON:case JSV.common.ScriptToken.DISPLAY1D:case JSV.common.ScriptToken.DISPLAY2D:case JSV.common.ScriptToken.ENABLEZOOM:case JSV.common.ScriptToken.GRIDON:case JSV.common.ScriptToken.POINTSONLY:case JSV.common.ScriptToken.PEAKTABSON:case JSV.common.ScriptToken.REVERSEPLOT:case JSV.common.ScriptToken.TITLEON:case JSV.common.ScriptToken.TITLEBOLDON:case JSV.common.ScriptToken.XSCALEON:case JSV.common.ScriptToken.XUNITSON:case JSV.common.ScriptToken.YSCALEON:case JSV.common.ScriptToken.YUNITSON:c=
JSV.common.Parameters.getTFToggle(c);if(null!=c){this.setBoolean(b,c.booleanValue());break}if(null==a)return;c=!a.getBoolean(b);switch(b){case JSV.common.ScriptToken.XSCALEON:this.setBoolean(JSV.common.ScriptToken.XUNITSON,c);a.setBoolean(JSV.common.ScriptToken.XUNITSON,c);break;case JSV.common.ScriptToken.YSCALEON:this.setBoolean(JSV.common.ScriptToken.YUNITSON,c),a.setBoolean(JSV.common.ScriptToken.YUNITSON,c)}this.setBoolean(b,c)}null!=a&&a.setBooleans(this,b)},"JSV.common.PanelData,JSV.common.ScriptToken,~S");
c$.isMatch=c(c$,"isMatch",function(a,b){return null==a||b.equalsIgnoreCase(a)},"~S,~S");c$.putInfo=c(c$,"putInfo",function(a,b,c,e){null!=e&&JSV.common.Parameters.isMatch(a,c)&&b.put(null==a?c:a,e)},"~S,java.util.Map,~S,~O")});s("JSV.common");t(["JSV.common.MeasurementData"],"JSV.common.PeakData",["java.lang.Double","JU.DF","JSV.common.Coordinate","$.PeakPick"],function(){c$=k(function(){this.maxY=this.minY=this.thresh=0;m(this,arguments)},JSV.common,"PeakData",JSV.common.MeasurementData);c(c$,"getThresh",
function(){return this.thresh});e(c$,"getDataHeader",function(){return this.spec.isHNMR()?JSV.common.PeakData.HNMR_HEADER:w(-1,["peak",this.spec.getXUnits(),this.spec.getYUnits()])});e(c$,"getMeasurementListArray",function(){for(var a=Array(this.size()),b=L(-1,[-1E100,1E100,1E100]),c,e=0,f=this.size();0<=--f;e++)c=this.spec.getPeakListArray(this.get(f),b,this.maxY),a[e]=2==c.length?w(-1,[""+(e+1),JU.DF.formatDecimalDbl(c[0],2),JU.DF.formatDecimalDbl(c[1],4)]):w(-1,[""+(e+1),JU.DF.formatDecimalDbl(c[0],
4),JU.DF.formatDecimalDbl(c[1],4),JU.DF.formatDecimalDbl(c[2],2),0==c[3]?"":JU.DF.formatDecimalDbl(c[3],2),0==c[4]?"":JU.DF.formatDecimalDbl(c[4],2),0==c[5]?"":JU.DF.formatDecimalDbl(c[5],2)]);return a},"~S");e(c$,"getMeasurementListArrayReal",function(){for(var a=L(this.size(),0),b=L(-1,[-1E100,1E100,1E100]),c=0,e=this.size();0<=--e;c++)a[c]=this.spec.getPeakListArray(this.get(e),b,this.maxY);return a},"~S");c(c$,"getInfo",function(a){a.put("interpolation",this.myParams.peakListInterpolation);a.put("threshold",
Double.$valueOf(this.myParams.peakListThreshold));M(this,JSV.common.PeakData,"getInfo",[a])},"java.util.Map");c(c$,"setPeakList",function(a,b,c){this.precision=-2147483648==b?this.spec.getDefaultUnitPrecision():b;var e=this.spec.getXYCoords();if(!(3>e.length)){this.clear();null!=a&&(this.myParams.peakListInterpolation=a.peakListInterpolation,this.myParams.peakListThreshold=a.peakListThreshold);a=this.myParams.peakListInterpolation.equals("parabolic");var f=this.spec.isInverted();this.minY=c.minYOnScale;
this.maxY=c.maxYOnScale;var h=c.minXOnScale;c=c.maxXOnScale;this.thresh=this.myParams.peakListThreshold;Double.isNaN(this.thresh)&&(this.thresh=this.myParams.peakListThreshold=(this.minY+this.maxY)/2);var r=0,j=L(-1,[e[0].getYVal(),r=e[1].getYVal(),0]),l=0;if(f)for(f=2;f<e.length;f++){var k=j[f%3]=e[f].getYVal();if(r<this.thresh&&(j[(f-2)%3]>r&&r<k)&&(r=a?JSV.common.Coordinate.parabolicInterpolation(e,f-1):e[f-1].getXVal(),r>=h||r<=c))if(r=(new JSV.common.PeakPick).setValue(r,k,this.spec,null,0),
this.addLast(r),100==++l)break;r=k}else for(f=2;f<e.length;f++){k=j[f%3]=e[f].getYVal();if(r>this.thresh&&(j[(f-2)%3]<r&&r>k)&&(r=a?JSV.common.Coordinate.parabolicInterpolation(e,f-1):e[f-1].getXVal(),r>=h&&r<=c&&(r=(new JSV.common.PeakPick).setValue(r,k,this.spec,JU.DF.formatDecimalDbl(r,b),r),this.addLast(r),100==++l)))break;r=k}}},"JSV.common.Parameters,~N,JSV.common.ScaleData");c$.HNMR_HEADER=c$.prototype.HNMR_HEADER=w(-1,"peak shift/ppm intens shift/hz diff/hz 2-diff 3-diff".split(" "))});s("JSV.common");
t(null,"JSV.common.PeakInfo",["JU.PT"],function(){c$=k(function(){this.px1=this.px0=this.yMax=this.yMin=this.xMax=this.xMin=0;this.atomKey=this._match=this.spectrum=this.id=this.atoms=this.model=this.title=this.filePathForwardSlash=this.file=this.index=this.type2=this.type=this.stringInfo=null;m(this,arguments)},JSV.common,"PeakInfo");n(c$,function(){});n(c$,function(a){this.stringInfo=a;this.type=JU.PT.getQuotedAttribute(a,"type");null==this.type&&(this.type="");this.type=this.type.toUpperCase();
var b=this.type.indexOf("/");this.type2=0>b?"":JSV.common.PeakInfo.fixType(this.type.substring(this.type.indexOf("/")+1));this.type=0<=b?JSV.common.PeakInfo.fixType(this.type.substring(0,b))+"/"+this.type2:JSV.common.PeakInfo.fixType(this.type);this.id=JU.PT.getQuotedAttribute(a,"id");this.index=JU.PT.getQuotedAttribute(a,"index");this.file=JU.PT.getQuotedAttribute(a,"file");System.out.println("pi file="+this.file);this.filePathForwardSlash=null==this.file?null:this.file.$replace("\\","/");this.model=
JU.PT.getQuotedAttribute(a,"model");a.contains('baseModel=""')||(this.atoms=JU.PT.getQuotedAttribute(a,"atoms"));this.atomKey=","+this.atoms+",";this.title=JU.PT.getQuotedAttribute(a,"title");this._match=JU.PT.getQuotedAttribute(a,"_match");this.xMax=JU.PT.parseFloat(JU.PT.getQuotedAttribute(a,"xMax"));this.xMin=JU.PT.parseFloat(JU.PT.getQuotedAttribute(a,"xMin"));this.yMax=JU.PT.parseFloat(JU.PT.getQuotedAttribute(a,"yMax"));this.yMin=JU.PT.parseFloat(JU.PT.getQuotedAttribute(a,"yMin"))},"~S");c(c$,
"isClearAll",function(){return null==this.spectrum});c(c$,"getType",function(){return this.type});c(c$,"getAtoms",function(){return this.atoms});c(c$,"getXMax",function(){return this.xMax});c(c$,"getXMin",function(){return this.xMin});c(c$,"getYMin",function(){return this.yMin});c(c$,"getYMax",function(){return this.yMax});c(c$,"getX",function(){return(this.xMax+this.xMin)/2});c(c$,"getMatch",function(){return this._match});c$.fixType=c(c$,"fixType",function(a){return a.equals("HNMR")?"1HNMR":a.equals("CNMR")?
"13CNMR":a},"~S");e(c$,"toString",function(){return this.stringInfo});c(c$,"getIndex",function(){return this.index});c(c$,"getTitle",function(){return this.title});c(c$,"checkFileIndex",function(a,b,c){return null!=c?0<=this.atomKey.indexOf(c):b.equals(this.index)&&(a.equals(this.file)||a.equals(this.filePathForwardSlash))},"~S,~S,~S");c(c$,"checkFileTypeModel",function(a,b,c){return a.equals(this.file)&&this.checkModel(c)&&this.type.endsWith(b)},"~S,~S,~S");c(c$,"checkTypeModel",function(a,b){return this.checkType(a)&&
this.checkModel(b)},"~S,~S");c(c$,"checkModel",function(a){return null!=a&&a.equals(this.model)},"~S");c(c$,"checkType",function(a){return a.endsWith(this.type)},"~S");c(c$,"checkTypeMatch",function(a){return this.checkType(a.type)&&(this.checkId(a._match)||this.checkModel(a._match)||0<=this.title.toUpperCase().indexOf(a._match))},"JSV.common.PeakInfo");c(c$,"checkId",function(a){return null==a?!1:null!=this.id&&a.toUpperCase().startsWith("ID=")&&a.substring(3).equals(this.id)||(a=a.toUpperCase()).startsWith("INDEX=")&&
a.equals("INDEX="+this.index)||a.startsWith("#=")&&a.equals("#="+this.index)},"~S");c(c$,"getModel",function(){return this.model});c(c$,"getFilePath",function(){return this.file});c(c$,"autoSelectOnLoad",function(){return this.type.startsWith("GC")});c(c$,"setPixelRange",function(a,b){this.px0=a;this.px1=b},"~N,~N");c(c$,"checkRange",function(a,b){return(2147483647!=a?this.px0<=a&&this.px1>=a:b>=this.xMin&&b<=this.xMax)?Math.abs(b-this.getX()):1E100},"~N,~N");c(c$,"getXPixel",function(){return x((this.px0+
this.px1)/2)});c$.nullPeakInfo=c$.prototype.nullPeakInfo=new JSV.common.PeakInfo});s("JSV.common");t(["JSV.common.Measurement"],"JSV.common.PeakPick",null,function(){c$=u(JSV.common,"PeakPick",JSV.common.Measurement);c(c$,"setValue",function(a,b,c,e,f){null==e?(this.set(a,b),this.setPt2(c,!1)):(this.setA(a,b,c,e,!1,!1,0,6),this.value=f,this.setPt2(this.getXVal(),this.getYVal()));return this},"~N,~N,JSV.common.Spectrum,~S,~N")});s("JSV.common");t(["java.util.EventObject"],"JSV.common.PeakPickEvent",
null,function(){c$=k(function(){this.peakInfo=this.coord=null;m(this,arguments)},JSV.common,"PeakPickEvent",java.util.EventObject);n(c$,function(a,b,c){z(this,JSV.common.PeakPickEvent,[a]);this.coord=b;this.peakInfo=null==c?null:c},"~O,JSV.common.Coordinate,JSV.common.PeakInfo");c(c$,"getCoord",function(){return this.coord});c(c$,"getPeakInfo",function(){return this.peakInfo});e(c$,"toString",function(){return null==this.peakInfo?null:this.peakInfo.toString()})});s("JSV.common");t(["JSV.common.Coordinate",
"$.ScriptToken"],"JSV.common.PlotWidget",null,function(){c$=k(function(){this.yPixel1=this.xPixel1=this.yPixel0=this.xPixel0=0;this.is2Donly=this.is2D=this.isXtype=this.isPinOrCursor=this.isPin=!1;this.isEnabled=!0;this.isVisible=!1;this.color=this.name=null;m(this,arguments)},JSV.common,"PlotWidget",JSV.common.Coordinate);F(c$,function(){this.color=JSV.common.ScriptToken.PLOTCOLOR});e(c$,"toString",function(){return this.name+(!this.isPinOrCursor?""+this.xPixel0+" "+this.yPixel0+" / "+this.xPixel1+
" "+this.yPixel1:" x="+this.getXVal()+"/"+this.xPixel0+" y="+this.getYVal()+"/"+this.yPixel0)});n(c$,function(a){z(this,JSV.common.PlotWidget,[]);this.name=a;this.isPin="p"==a.charAt(0);this.isPinOrCursor="z"!=a.charAt(0);this.isXtype=0<=a.indexOf("x");this.is2Donly=(this.is2D=0<=a.indexOf("2D"))&&"p"==a.charAt(0)},"~S");c(c$,"selected",function(a,b){return this.isVisible&&5>Math.abs(a-this.xPixel0)&&5>Math.abs(b-this.yPixel0)},"~N,~N");c(c$,"setX",function(a,b){this.setXVal(a);this.xPixel0=this.xPixel1=
b},"~N,~N");c(c$,"setY",function(a,b){this.setYVal(a);this.yPixel0=this.yPixel1=b},"~N,~N");c(c$,"getValue",function(){return this.isXtype?this.getXVal():this.getYVal()});c(c$,"setEnabled",function(a){this.isEnabled=a},"~B")});s("JSV.common");c$=k(function(){this.imageableWidth=this.imageableHeight=this.paperWidth=this.paperHeight=this.imageableY=this.imageableX=0;this.layout="landscape";this.position="fit to page";this.showTitle=this.showYScale=this.showXScale=this.showGrid=!0;this.font="Helvetica";
this.paper=null;this.asPDF=!0;this.date=this.title=null;m(this,arguments)},JSV.common,"PrintLayout");F(c$,function(){this.paperHeight=G(72*Math.min(11,11.69));this.paperWidth=G(72*Math.min(8.5,8.27));this.imageableHeight=this.paperHeight;this.imageableWidth=this.paperWidth});n(c$,function(a){null!=a&&(this.asPDF=!0,a.setDefaultPrintOptions(this))},"JSV.common.PanelData");s("JSV.common");t(null,"JSV.common.RepaintManager",["JSV.common.JSViewer"],function(){c$=k(function(){this.repaintPending=!1;this.vwr=
null;m(this,arguments)},JSV.common,"RepaintManager");n(c$,function(a){this.vwr=a},"JSV.common.JSViewer");c(c$,"refresh",function(){if(this.repaintPending)return!1;this.repaintPending=!0;var a=this.vwr.html5Applet,b=JSV.common.JSViewer.isJS&&!JSV.common.JSViewer.isSwingJS?JSV.common.JSViewer.jmolObject:null;null==b?this.vwr.selectedPanel.repaint():(b.repaint(a,!1),this.repaintDone());return!0});c(c$,"repaintDone",function(){this.repaintPending=!1;this.notify()})});s("JSV.common");t(null,"JSV.common.ScaleData",
["java.lang.Double","JSV.common.Coordinate"],function(){c$=k(function(){this.maxX=this.minX=this.pointCount=this.endDataPointIndex=this.startDataPointIndex=this.initMaxY=this.initMinY=this.initMaxYOnScale=this.initMinYOnScale=0;this.firstX=NaN;this.specShift=this.maxXOnScale=this.minXOnScale=0;this.minorTickCounts=this.steps=this.exportPrecision=this.precision=null;this.maxY=this.minY=this.maxYOnScale=this.minYOnScale=0;this.isShiftZoomedY=!1;this.spectrumScaleFactor=1;this.spectrumYRef=0;this.userYFactor=
1;this.yFactorForScale=this.xFactorForScale=this.maxY2D=this.minY2D=this.firstY=0;m(this,arguments)},JSV.common,"ScaleData");F(c$,function(){this.precision=E(2,0);this.exportPrecision=E(2,0);this.steps=L(2,0);this.minorTickCounts=E(2,0)});n(c$,function(){});n(c$,function(a,b){this.startDataPointIndex=a;this.endDataPointIndex=b;this.pointCount=this.endDataPointIndex-this.startDataPointIndex+1},"~N,~N");n(c$,function(a,b,c,e,f){this.minX=JSV.common.Coordinate.getMinX(a,b,c);this.maxX=JSV.common.Coordinate.getMaxX(a,
b,c);this.minY=JSV.common.Coordinate.getMinY(a,b,c);0<this.minY&&!e&&(this.minY=0);this.maxY=JSV.common.Coordinate.getMaxY(a,b,c);this.setScale(e,f)},"~A,~N,~N,~B,~B");c(c$,"setScale",function(a,b){this.setXScale();a||(this.maxXOnScale+=this.steps[0]/2);this.setYScale(this.minY,this.maxY,!0,b)},"~B,~B");c(c$,"setXScale",function(){var a=this.setScaleParams(this.minX,this.maxX,0);this.firstX=Math.floor(this.minX/a)*a;1E-4<Math.abs((this.minX-this.firstX)/a)&&(this.firstX+=a);this.minXOnScale=this.minX;
this.maxXOnScale=this.maxX});c(c$,"isYZeroOnScale",function(){return this.minYOnScale<this.spectrumYRef&&this.maxYOnScale>this.spectrumYRef});c(c$,"setYScale",function(a,b,c,e){0==a&&0==b&&(b=1);this.isShiftZoomedY&&(a=this.minYOnScale,b=this.maxYOnScale);var f=this.setScaleParams(a,b,1),h=e?f/2:f/4;e=e?f/4:f/2;this.isShiftZoomedY||(this.minYOnScale=0==a?0:c?h*Math.floor(a/h):a,this.maxYOnScale=c?e*Math.ceil(1.05*b/e):b);this.firstY=0==a?0:Math.floor(a/h)*h;if(0>this.minYOnScale&&0<this.maxYOnScale)for(this.firstY=
0;this.firstY-f>this.minYOnScale;)this.firstY-=f;else 0!=this.minYOnScale&&1E-4<Math.abs((a-this.firstY)/h)&&(this.firstY+=h);c&&(this.initMinYOnScale=this.minYOnScale,this.initMaxYOnScale=this.maxYOnScale,this.initMinY=a,this.initMaxY=b)},"~N,~N,~B,~B");c(c$,"scale2D",function(a){var b=this.maxY-this.minY;1==a?(this.maxY=this.initMaxY,this.minY=this.initMinY):this.maxY=this.minY+b/a},"~N");c(c$,"setXRange",function(a,b){this.minX=a;this.maxX=b;this.setXScale()},"~N,~N");c$.getXRange=c(c$,"getXRange",
function(a,b,c,e,f,h,r,j){for(var l=0,k=0,l=f;l<=h;l++)if(b[l].getXVal()>=c){r[a]=l;k=1;break}for(;++l<=h&&b[l].getXVal()<=e;)k++;j[a]=r[a]+k-1;return k},"~N,~A,~N,~N,~N,~N,~A,~A");c(c$,"setScaleParams",function(a,b,c){a=b==a?1:Math.abs(b-a)/14;var e=Math.log10(Math.abs(a));b=x(Math.floor(e));this.exportPrecision[c]=b;this.precision[c]=0>=b?Math.min(8,1-b):3<b?-2:0;a=0;for(e=Math.pow(10,e-b);e>JSV.common.ScaleData.NTICKS[a];)a++;this.steps[c]=Math.pow(10,b)*JSV.common.ScaleData.NTICKS[a];e=Math.log10(Math.abs(100010*
this.steps[c]));b=e-Math.floor(e);for(a=e=0;a<JSV.common.ScaleData.NTICKS.length;a++)if(0.001>Math.abs(b-JSV.common.ScaleData.LOGTICKS[a])){e=JSV.common.ScaleData.NTICKS[a];break}this.minorTickCounts[c]=e;return this.steps[c]},"~N,~N,~N");c(c$,"isInRangeX",function(a){return a>=this.minX&&a<=this.maxX},"~N");c(c$,"addSpecShift",function(a){this.specShift+=a;this.minX+=a;this.maxX+=a;this.minXOnScale+=a;this.maxXOnScale+=a;this.firstX+=a},"~N");c(c$,"getInfo",function(a){a.put("specShift",Double.$valueOf(this.specShift));
a.put("minX",Double.$valueOf(this.minX));a.put("maxX",Double.$valueOf(this.maxX));a.put("minXOnScale",Double.$valueOf(this.minXOnScale));a.put("maxXOnScale",Double.$valueOf(this.maxXOnScale));a.put("minY",Double.$valueOf(this.minY));a.put("maxY",Double.$valueOf(this.maxY));a.put("minYOnScale",Double.$valueOf(this.minYOnScale));a.put("maxYOnScale",Double.$valueOf(this.maxYOnScale));a.put("minorTickCountX",Integer.$valueOf(this.minorTickCounts[0]));a.put("xStep",Double.$valueOf(this.steps[0]));return a},
"java.util.Map");c(c$,"setMinMax",function(a,b,c,e){this.minX=a;this.maxX=b;this.minY=c;this.maxY=e},"~N,~N,~N,~N");c(c$,"toX",function(a,b,c){return this.toXScaled(a,b,c,this.xFactorForScale)},"~N,~N,~B");c(c$,"toX0",function(a,b,c,e){return this.toXScaled(a,c,e,(this.maxXOnScale-this.minXOnScale)/(c-b))},"~N,~N,~N,~B");c(c$,"toXScaled",function(a,b,c,e){return c?this.maxXOnScale-(b-a)*e:this.minXOnScale+(b-a)*e},"~N,~N,~B,~N");c(c$,"toPixelX",function(a,b,c,e){return this.toPixelXScaled(a,b,c,e,
this.xFactorForScale)},"~N,~N,~N,~B");c(c$,"toPixelX0",function(a,b,c,e){return this.toPixelXScaled(a,b,c,e,(this.maxXOnScale-this.minXOnScale)/(c-b))},"~N,~N,~N,~B");c(c$,"toPixelXScaled",function(a,b,c,e,f){a=x((a-this.minXOnScale)/f);return e?b+a:c-a},"~N,~N,~N,~B,~N");c(c$,"toY",function(a,b){return this.maxYOnScale+(b-a)*this.yFactorForScale},"~N,~N");c(c$,"toY0",function(a,b,c){return Math.max(this.minYOnScale,Math.min(this.maxYOnScale+(b-a)*((this.maxYOnScale-this.minYOnScale)/(c-b)),this.maxYOnScale))},
"~N,~N,~N");c(c$,"toPixelY",function(a,b){return Double.isNaN(a)?-2147483648:b-x(((a-this.spectrumYRef)*this.userYFactor+this.spectrumYRef-this.minYOnScale)/this.yFactorForScale)},"~N,~N");c(c$,"toPixelY0",function(a,b,c){return x(b+(this.maxYOnScale-a)/((this.maxYOnScale-this.minYOnScale)/(c-b)))},"~N,~N,~N");c(c$,"setXYScale",function(a,b,c){var e=this.spectrumYRef,f=this.spectrumScaleFactor,h=1!=f||this.isShiftZoomedY,k=h?this.initMinYOnScale:this.minY,j=h?this.initMaxYOnScale:this.maxY;h&&e<k&&
(e=k);h&&e>j&&(e=j);this.setYScale((k-e)/f+e,(j-e)/f+e,1==f,c);this.xFactorForScale=(this.maxXOnScale-this.minXOnScale)/(a-1);this.yFactorForScale=(this.maxYOnScale-this.minYOnScale)/(b-1)},"~N,~N,~B");c$.copyScaleFactors=c(c$,"copyScaleFactors",function(a,b){for(var c=0;c<a.length;c++)b[c].spectrumScaleFactor=a[c].spectrumScaleFactor,b[c].spectrumYRef=a[c].spectrumYRef,b[c].userYFactor=a[c].userYFactor,b[c].specShift=a[c].specShift,b[c].isShiftZoomedY=a[c].isShiftZoomedY},"~A,~A");c$.copyYScales=
c(c$,"copyYScales",function(a,b){for(var c=0;c<a.length;c++)b[c].initMinYOnScale=a[c].initMinYOnScale,b[c].initMaxYOnScale=a[c].initMaxYOnScale,b[c].minY=a[c].minY,b[c].maxY=a[c].maxY,a[c].isShiftZoomedY&&(b[c].isShiftZoomedY=!0,b[c].minYOnScale=a[c].minYOnScale,b[c].maxYOnScale=a[c].maxYOnScale)},"~A,~A");c$.setDataPointIndices=c(c$,"setDataPointIndices",function(a,b,c,e,f,h){for(var k=0,j=a.size(),l=0;l<j;l++){var m=a.get(l).getXYCoords();JSV.common.ScaleData.getXRange(l,m,b,c,0,m.length-1,f,h)>=
e&&k++}return k==j},"JU.Lst,~N,~N,~N,~A,~A");c$.fixScale=c(c$,"fixScale",function(a){if(!a.isEmpty())for(;;){for(var b,c=a.entrySet().iterator();c.hasNext()&&((b=c.next())||1);){var e=b.getValue(),f=e.indexOf("E");0<=f&&(e=e.substring(0,f));if(0>e.indexOf(".")||!e.endsWith("0")&&!e.endsWith("."))return}for(c=a.entrySet().iterator();c.hasNext()&&((b=c.next())||1);)e=b.getValue(),f=e.indexOf("E"),0<=f?b.setValue(e.substring(0,f-1)+e.substring(f)):b.setValue(e.substring(0,e.length-1))}},"java.util.Map");
c(c$,"scaleBy",function(a){if(this.isShiftZoomedY){var b=this.isYZeroOnScale()?this.spectrumYRef:(this.minYOnScale+this.maxYOnScale)/2;this.minYOnScale=b-(b-this.minYOnScale)/a;this.maxYOnScale=b-(b-this.maxYOnScale)/a}else this.spectrumScaleFactor*=a},"~N");D(c$,"NTICKS",E(-1,[2,5,10,10]));c$.LOGTICKS=c$.prototype.LOGTICKS=L(-1,[Math.log10(2),Math.log10(5),0,1])});s("JSV.common");t(["java.lang.Enum"],"JSV.common.ScriptToken",["java.util.Hashtable","JU.Lst","$.PT","$.SB","JSV.common.ScriptTokenizer"],
function(){c$=k(function(){this.description=this.tip=null;m(this,arguments)},JSV.common,"ScriptToken",Enum);c(c$,"getTip",function(){return"  "+("T"===this.tip?"TRUE/FALSE/TOGGLE":"TF"===this.tip?"TRUE or FALSE":"C"===this.tip?"COLOR":this.tip)});n(c$,function(){});n(c$,function(a){this.tip=a;this.description=""},"~S");n(c$,function(a,b){this.tip=a;this.description="-- "+b},"~S,~S");c$.getParams=c(c$,"getParams",function(){if(null==JSV.common.ScriptToken.htParams){JSV.common.ScriptToken.htParams=
new java.util.Hashtable;for(var a,b=0,c=JSV.common.ScriptToken.values();b<c.length&&((a=c[b])||1);b++)JSV.common.ScriptToken.htParams.put(a.name(),a)}return JSV.common.ScriptToken.htParams});c$.getScriptToken=c(c$,"getScriptToken",function(a){a=JSV.common.ScriptToken.getParams().get(a.toUpperCase());return null==a?JSV.common.ScriptToken.UNKNOWN:a},"~S");c$.getScriptTokenList=c(c$,"getScriptTokenList",function(a,b){null!=a&&(a=a.toUpperCase());var c=new JU.Lst;if(b){var e=JSV.common.ScriptToken.getScriptToken(a);
null!=e&&c.addLast(e)}else for(var f=JSV.common.ScriptToken.getParams().entrySet().iterator();f.hasNext()&&((e=f.next())||1);)(null==a||e.getKey().startsWith(a))&&null!=e.getValue().tip&&c.addLast(e.getValue());return c},"~S,~B");c$.getValue=c(c$,"getValue",function(a,b,c){if(!b.hasMoreTokens())return"";switch(a){default:return JSV.common.ScriptTokenizer.nextStringToken(b,!0);case JSV.common.ScriptToken.CLOSE:case JSV.common.ScriptToken.GETPROPERTY:case JSV.common.ScriptToken.INTEGRATION:case JSV.common.ScriptToken.INTEGRATE:case JSV.common.ScriptToken.JMOL:case JSV.common.ScriptToken.LABEL:case JSV.common.ScriptToken.LOAD:case JSV.common.ScriptToken.PEAK:case JSV.common.ScriptToken.PLOTCOLORS:case JSV.common.ScriptToken.YSCALE:case JSV.common.ScriptToken.WRITE:return JSV.common.ScriptToken.removeCommandName(c);
case JSV.common.ScriptToken.SELECT:case JSV.common.ScriptToken.OVERLAY:case JSV.common.ScriptToken.VIEW:case JSV.common.ScriptToken.ZOOM:return JSV.common.ScriptToken.removeCommandName(c).$replace(","," ").trim()}},"JSV.common.ScriptToken,JSV.common.ScriptTokenizer,~S");c$.removeCommandName=c(c$,"removeCommandName",function(a){var b=a.indexOf(" ");return 0>b?"":a.substring(b).trim()},"~S");c$.getKey=c(c$,"getKey",function(a){var b=a.nextToken();if(b.startsWith("#")||b.startsWith("//"))return null;
b.equalsIgnoreCase("SET")&&(b=a.nextToken());return b.toUpperCase()},"JSV.common.ScriptTokenizer");c$.getTokens=c(c$,"getTokens",function(a){a.startsWith("'")&&a.endsWith("'")&&(a='"'+JU.PT.trim(a,"'")+'"');var b=new JU.Lst;for(a=new JSV.common.ScriptTokenizer(a,!1);a.hasMoreTokens();){var c=JSV.common.ScriptTokenizer.nextStringToken(a,!1);if(c.startsWith("//")||c.startsWith("#"))break;b.addLast(c)}return b},"~S");c$.getNameList=c(c$,"getNameList",function(a){if(0==a.size())return"";for(var b=new JU.SB,
c=0;c<a.size();c++)b.append(",").append(a.get(c).toString());return b.toString().substring(1)},"JU.Lst");c(c$,"getDescription",function(){return this.description});c$.htParams=null;q(c$,"UNKNOWN",0,[]);q(c$,"APPLETID",1,[]);q(c$,"APPLETREADYCALLBACKFUNCTIONNAME",2,[]);q(c$,"AUTOINTEGRATE",3,["TF","automatically integrate an NMR spectrum"]);q(c$,"BACKGROUNDCOLOR",4,["C","set the background color"]);q(c$,"CLOSE",5,["spectrumId or fileName or ALL or VIEWS or SIMULATIONS","close one or more views or simulations"]);
q(c$,"COMPOUNDMENUON",6,[]);q(c$,"COORDCALLBACKFUNCTIONNAME",7,[]);q(c$,"COORDINATESCOLOR",8,["C","set the color of the coordinates shown in the upper right-hand corner"]);q(c$,"COORDINATESON",9,["T","turn on or off the coordinates shown in the upper right-hand corner"]);q(c$,"DEBUG",10,["TF","turn debugging on and off"]);q(c$,"DEFAULTLOADSCRIPT",11,['"script..."',"set the script to be run after each file is loaded"]);q(c$,"DEFAULTNMRNORMALIZATION",12,["maxYvalue","set the value to be given the largest peak in an HMR spectrum"]);
q(c$,"DISPLAYFONTNAME",13,[]);q(c$,"DISPLAY1D",14,["T","turn on or off display of 1D spectra when 1D and 2D spectra are loaded"]);q(c$,"DISPLAY2D",15,["T","turn on or off display of the 2D spectrum when 1D and 2D spectra are loaded"]);q(c$,"ENABLEZOOM",16,["T","allow or disallow zooming"]);q(c$,"ENDINDEX",17,[]);q(c$,"FINDX",18,["value","move the vertical-line cursor to a specific x-axis value"]);q(c$,"GETPROPERTY",19,["[propertyName] or ALL or NAMES","get a property value or all property values as key/value pairs, or a list of names"]);
q(c$,"GETSOLUTIONCOLOR",20,[" FILL or FILLNONE or FILLALL or FILLALLNONE","estimate the solution color for UV/VIS spectra"]);q(c$,"GRIDCOLOR",21,["C","color of the grid"]);q(c$,"GRIDON",22,["T","turn the grid lines on or off"]);q(c$,"HELP",23,["[command]","get this listing or help for a specific command"]);q(c$,"HIDDEN",24,[]);q(c$,"HIGHLIGHTCOLOR",25,["C","set the highlight color"]);q(c$,"HIGHLIGHT",26,["OFF or X1 X2 [OFF] or X1 X2 r g b [a]","turns on or off a highlight color, possibily setting its color, where r g b a are 0-255 or 0.0-1.0"]);
q(c$,"INTEGRALOFFSET",27,["percent","sets the integral offset from baseline"]);q(c$,"INTEGRALRANGE",28,["percent","sets the height of the total integration"]);q(c$,"INTEGRATE",29,["","see INTEGRATION"]);q(c$,"INTEGRATION",30,["ON/OFF/TOGGLE/AUTO/CLEAR/MIN value/MARK ppm1-ppm2:norm,ppm3-ppm4,...","show/hide integration or set integrals (1D 1H NMR only)"]);q(c$,"INTEGRALPLOTCOLOR",31,["C","color of the integration line"]);q(c$,"INTEGRATIONRATIOS",32,["'x:value,x:value,..'","annotate the spectrum with numbers or text at specific x values"]);
q(c$,"INTERFACE",33,["SINGLE or OVERLAY","set how multiple spectra are displayed"]);q(c$,"INVERTY",34,["","invert the Y axis"]);q(c$,"IRMODE",35,["A or T or TOGGLE","set the IR mode to absorption or transmission"]);q(c$,"JMOL",36,["...Jmol command...","send a command to Jmol (if present)"]);q(c$,"JSV",37,[]);q(c$,"LABEL",38,['x y [color and/or "text"]',"add a text label"]);q(c$,"LINK",39,["AB or ABC or NONE or ALL","synchronize the crosshair of a 2D spectrum with 1D cursors"]);q(c$,"LOAD",40,['[APPEND] "fileName" [first] [last]; use "" for current file; $H1/name or $C13/name for simulation',
"load a specturm"]);q(c$,"LOADFILECALLBACKFUNCTIONNAME",41,[]);q(c$,"LOADIMAGINARY",42,["TF","set TRUE to load imaginary NMR component"]);q(c$,"MENUON",43,[]);q(c$,"OBSCURE",44,[]);q(c$,"OVERLAY",45,[]);q(c$,"OVERLAYSTACKED",46,["TF","whether viewed spectra are shown separately, in a stack"]);q(c$,"PEAK",47,["[IR,CNMR,HNMR,MS] [#nnn or ID=xxx or text] [ALL], for example: PEAK HNMR #3","highlights a peak based on its number or title text, optionally checking all loade spectra"]);q(c$,"PEAKCALLBACKFUNCTIONNAME",
48,[]);q(c$,"PEAKLIST",49,["[THRESHOLD=n] [INTERPOLATE=PARABOLIC or NONE]","creates a peak list based on a threshold value and parabolic or no interpolation"]);q(c$,"PEAKTABCOLOR",50,["C","sets the color of peak marks for a peak listing"]);q(c$,"PEAKTABSON",51,["T","show peak tabs for simulated spectra"]);q(c$,"PLOTAREACOLOR",52,["C","sets the color of the plot background"]);q(c$,"PLOTCOLOR",53,["C","sets the color of the graph line"]);q(c$,"PLOTCOLORS",54,["color,color,color,...","sets the colors of multiple plots"]);
q(c$,"POINTSONLY",55,["TF","show points only for all data"]);q(c$,"PRINT",56,["","prints the current spectrum"]);q(c$,"REVERSEPLOT",57,["T","reverses the x-axis of a spectrum"]);q(c$,"SCALEBY",58,["factor","multiplies the y-scale of the spectrum by a factor"]);q(c$,"SCALECOLOR",59,["C","sets the color of the x-axis and y-axis scales"]);q(c$,"SCRIPT",60,["filename.jsv","runs a script from a file"]);q(c$,"SELECT",61,["spectrumID, spectrumID,...","selects one or more spectra based on IDs"]);q(c$,"SETPEAK",
62,["xNew, xOld xNew, ?, or NONE","sets nearest peak to xOld ppm to a new value; NONE resets (1D NMR only)"]);q(c$,"SETX",63,["xNew, xOld xNew, ?, or NONE","sets an old ppm position in the spectrum to a new value; NONE resets (1D NMR only)"]);q(c$,"SHIFTX",64,["dx or NONE","shifts the x-axis of a 1D NMR spectrum by the given ppm; NONE resets (1D NMR only)"]);q(c$,"SHOWERRORS",65,["shows recent errors"]);q(c$,"SHOWINTEGRATION",66,["T","shows an integration listing"]);q(c$,"SHOWKEY",67,["T","shows a color key when multiple spectra are displayed"]);
q(c$,"SHOWMEASUREMENTS",68,["T","shows a listing of measurements"]);q(c$,"SHOWMENU",69,["displays the popup menu"]);q(c$,"SHOWPEAKLIST",70,["T","shows a listing for peak picking"]);q(c$,"SHOWPROPERTIES",71,["displays the header information of a JDX file"]);q(c$,"SHOWSOURCE",72,["displays the source JDX file associated with the selected data"]);q(c$,"SPECTRUM",73,["id","displays a specific spectrum, where id is a number 1, 2, 3... or a file.spectrum number such as 2.1"]);q(c$,"SPECTRUMNUMBER",74,["n",
"displays the nth spectrum loaded"]);q(c$,"STACKOFFSETY",75,["percent","sets the y-axis offset of stacked spectra"]);q(c$,"STARTINDEX",76,[]);q(c$,"SYNCCALLBACKFUNCTIONNAME",77,[]);q(c$,"SYNCID",78,[]);q(c$,"TEST",79,[]);q(c$,"TITLEON",80,["T","turns the title in the bottom left corner on or off"]);q(c$,"TITLEBOLDON",81,["T","makes the title bold"]);q(c$,"TITLECOLOR",82,["C","sets the color of the title"]);q(c$,"TITLEFONTNAME",83,["fontName","sets the title font"]);q(c$,"UNITSCOLOR",84,["C","sets the color of the x-axis and y-axis units"]);
q(c$,"VERSION",85,[]);q(c$,"VIEW",86,['spectrumID, spectrumID, ... Example: VIEW 3.1, 3.2  or  VIEW "acetophenone"',"creates a view of one or more spectra"]);q(c$,"XSCALEON",87,["T","set FALSE to turn off the x-axis scale"]);q(c$,"XUNITSON",88,["T","set FALSE to turn off the x-axis units"]);q(c$,"YSCALE",89,["[ALL] lowValue highValue"]);q(c$,"YSCALEON",90,["T","set FALSE to turn off the y-axis scale"]);q(c$,"YUNITSON",91,["T","set FALSE to turn off the y-axis units"]);q(c$,"WINDOW",92,[]);q(c$,"WRITE",
93,['[XY,DIF,DIFDUP,PAC,FIX,SQZ,AML,CML,JPG,PDF,PNG,SVG] "filename"',"writes a file in the specified format"]);q(c$,"ZOOM",94,["OUT or PREVIOUS or NEXT or x1,x2 or x1,y1 x2,y2","sets the zoom"]);q(c$,"ZOOMBOXCOLOR",95,[]);q(c$,"ZOOMBOXCOLOR2",96,[])});s("JSV.common");t(null,"JSV.common.ScriptTokenizer",["JU.PT"],function(){c$=k(function(){this.str=null;this.pt=-1;this.len=0;this.isCmd=!1;this.doCheck=!0;m(this,arguments)},JSV.common,"ScriptTokenizer");n(c$,function(a,b){this.str=a;this.len=a.length;
this.isCmd=b},"~S,~B");c$.nextStringToken=c(c$,"nextStringToken",function(a,b){var c=a.nextToken();return b&&'"'==c.charAt(0)&&c.endsWith('"')&&1<c.length?JU.PT.trimQuotes(c):c},"JSV.common.ScriptTokenizer,~B");c(c$,"nextToken",function(){this.doCheck&&this.hasMoreTokens();for(var a=this.pt,b='"'==this.str.charAt(this.pt);++this.pt<this.len;){switch(this.str.charAt(this.pt)){case '"':if(b){if(this.isCmd){b=!1;continue}this.pt++;break}this.isCmd&&(b=!0);continue;case " ":if(!this.isCmd&&!b)break;continue;
case ";":case "\n":if(this.isCmd&&!b)break;continue;default:continue}break}this.doCheck=!0;return this.str.substring(a,this.pt)});c(c$,"hasMoreTokens",function(){for(;++this.pt<this.len;){switch(this.str.charAt(this.pt)){case " ":case ";":case "\n":continue}break}this.doCheck=!1;return this.pt<this.len});c(c$,"getRemainingScript",function(){return this.str.substring(this.pt)})});s("JSV.common");c$=k(function(){this.isub=0;this.title=null;m(this,arguments)},JSV.common,"SubSpecChangeEvent");n(c$,function(a,
b){this.isub=a;this.title=b},"~N,~S");c(c$,"isValid",function(){return null!=this.title});c(c$,"getSubIndex",function(){return this.isub});e(c$,"toString",function(){return this.title});s("JSV.common");t(null,"JSV.common.ViewData",["JSV.common.Coordinate","$.ScaleData"],function(){c$=k(function(){this.thisScale=this.scaleData=null;this.iThisScale=this.nSpectra=0;this.spectra=null;m(this,arguments)},JSV.common,"ViewData");c(c$,"getScaleData",function(){return this.scaleData});c(c$,"getScale",function(){return this.thisScale});
n(c$,function(a,b,c,e,f,h,k){this.nSpectra=k?1:a.size();this.scaleData=Array(this.nSpectra);for(k=0;k<this.nSpectra;k++)this.scaleData[k]=new JSV.common.ScaleData(e[k],f[k]);this.init(a,b,c,h)},"JU.Lst,~N,~N,~A,~A,~B,~B");n(c$,function(a,b,c,e){this.nSpectra=a.size();var f=a.get(0).getXYCoords().length;this.scaleData=Array(1);this.scaleData[0]=new JSV.common.ScaleData(0,f-1);this.init(a,b,c,e)},"JU.Lst,~N,~N,~B");c(c$,"init",function(a,b,c,e){null==a?a=this.spectra:this.spectra=a;this.thisScale=this.scaleData[this.iThisScale=
0];for(var f=0;f<this.scaleData.length;f++)this.scaleData[f].userYFactor=a.get(f).getUserYFactor(),this.scaleData[f].spectrumYRef=a.get(f).getYRef();this.resetScaleFactors();var h=JSV.common.Coordinate.getMinX(a,this),k=JSV.common.Coordinate.getMaxX(a,this),j=JSV.common.Coordinate.getMinYUser(a,this),l=JSV.common.Coordinate.getMaxYUser(a,this);b!=c&&(j=b,l=c,j>l&&(f=j,j=l,l=f));a=a.get(0).isInverted();for(f=0;f<this.scaleData.length;f++)this.scaleData[f].setMinMax(h,k,j,l),this.scaleData[f].setScale(e,
a)},"JU.Lst,~N,~N,~B");c(c$,"newSpectrum",function(a){this.init(a,0,0,!1)},"JU.Lst");c(c$,"setXRangeForSubSpectrum",function(a){this.setXRange(0,a,this.scaleData[0].minX,this.scaleData[0].maxX,0,a.length-1)},"~A");c(c$,"setXRange",function(a,b,c,e,f,h){for(var k=0,j=0,k=f;k<=h;k++)if(f=b[k].getXVal(),f>=c){this.scaleData[a%this.scaleData.length].startDataPointIndex=k;break}for(;k<=h&&!(f=b[k].getXVal(),j++,f>=e);k++);this.scaleData[a%this.scaleData.length].endDataPointIndex=k;return j},"~N,~A,~N,~N,~N,~N");
c(c$,"getStartingPointIndex",function(a){return this.scaleData[a%this.scaleData.length].startDataPointIndex},"~N");c(c$,"getEndingPointIndex",function(a){return this.scaleData[a%this.scaleData.length].endDataPointIndex},"~N");c(c$,"areYScalesSame",function(a,b){a%=this.scaleData.length;b%=this.scaleData.length;return this.scaleData[a].minYOnScale==this.scaleData[b].minYOnScale&&this.scaleData[a].maxYOnScale==this.scaleData[b].maxYOnScale},"~N,~N");c(c$,"setScale",function(a,b,c,e){this.iThisScale=
a%this.scaleData.length;this.thisScale=this.scaleData[this.iThisScale];this.thisScale.setXYScale(b,c,e)},"~N,~N,~N,~B");c(c$,"resetScaleFactors",function(){for(var a=0;a<this.scaleData.length;a++)this.scaleData[a].spectrumScaleFactor=1});c(c$,"scaleSpectrum",function(a,b){if(!(0>=b||a>=this.nSpectra))if(-2==a)this.thisScale.scale2D(b);else if(0>a)for(a=0;a<this.scaleData.length;a++)this.scaleData[a].scaleBy(b);else this.scaleData[a%this.scaleData.length].scaleBy(b)},"~N,~N");c(c$,"getNewScales",function(a,
b,c,e){if(b)return this.scaleData;a%=this.scaleData.length;b=(c-this.thisScale.minYOnScale)/(this.thisScale.maxYOnScale-this.thisScale.minYOnScale);e=(e-this.thisScale.minYOnScale)/(this.thisScale.maxYOnScale-this.thisScale.minYOnScale);c=Array(this.scaleData.length);for(var f=0;f<this.scaleData.length;f++)c[f]=0<=a&&f!=a?this.scaleData[f]:new JSV.common.ScaleData;JSV.common.ScaleData.copyScaleFactors(this.scaleData,c);JSV.common.ScaleData.copyYScales(this.scaleData,c);for(f=0;f<this.scaleData.length;f++)0<=
a&&f!=a||(c[f].isShiftZoomedY=!0,c[f].minYOnScale=this.scaleData[f].minYOnScale*(1-b)+b*this.scaleData[f].maxYOnScale,c[f].maxYOnScale=this.scaleData[f].minYOnScale*(1-e)+e*this.scaleData[f].maxYOnScale);return c},"~N,~B,~N,~N")});s("JSV.common");C(JSV.common,"XYScaleConverter");s("JSV.common");c$=u(JSV.common,"ZoomEvent");n(c$,function(){});s("JSV.dialog");t(["JSV.api.AnnotationData","JSV.common.Annotation"],"JSV.dialog.JSVDialog","java.lang.Double JU.DF $.PT JSV.common.IntegralData $.PeakData JSV.dialog.DialogManager".split(" "),
function(){c$=k(function(){this.myParams=this.xyData=this.combo1=this.txt3=this.txt2=this.txt1=this.jsvp=this.dialog=this.manager=this.$spec=this.vwr=this.title=this.type=this.options=this.optionKey=null;this.precision=1;this.showHideButton=this.loc=null;this.defaultVisible=this.isNumeric=this.addApplyBtn=this.addCombo1=this.addClearBtn=!1;this.tableData=this.graphSetKey=this.subType=null;this.addUnits=!1;this.unitPtr=this.formatOptions=this.unitOptions=null;this.isON=!0;this.lastNorm=1;this.iSelected=
this.iRowColSelected=-1;this.skipCreate=!1;this.iColSelected=this.iRowSelected=-1;m(this,arguments)},JSV.dialog,"JSVDialog",JSV.common.Annotation,JSV.api.AnnotationData);e(c$,"isDialog",function(){return!0});c(c$,"setParams",function(a,b,c){this.title=a=JSV.dialog.DialogManager.fixTitle(a);this.vwr=b;this.$spec=c;this.manager=b.getDialogManager();this.jsvp=b.selectedPanel;this.myParams=b.getPlatformInterface("Parameters").setName("dialogParams");this.subType=null==c?"!":c.getTypeLabel();this.optionKey=
this.type+"_"+this.subType;this.options=this.manager.getDialogOptions();null!=c&&(a=c.getDefaultAnnotationInfo(this.type),this.options.put(this.optionKey,a),this.unitOptions=a[0],this.formatOptions=a[1],this.unitPtr=this.options.get(this.optionKey+"_unitPtr"),null==this.unitPtr&&(this.unitPtr=a[2]));switch(this.type){case JSV.common.Annotation.AType.Integration:this.addApplyBtn=this.defaultVisible=this.addClearBtn=this.isNumeric=!0;break;case JSV.common.Annotation.AType.Measurements:this.defaultVisible=
this.addCombo1=this.addClearBtn=this.isNumeric=!0;break;case JSV.common.Annotation.AType.PeakList:this.defaultVisible=this.addApplyBtn=this.isNumeric=!0;break;case JSV.common.Annotation.AType.Views:this.defaultVisible=!0}this.initDialog();return this},"~S,JSV.common.JSViewer,JSV.common.Spectrum");c(c$,"initDialog",function(){this.dialog=this.manager.getDialog(this);this.restoreDialogPosition(this.jsvp,this.getPosXY());this.dialog.setTitle(this.title);this.layoutDialog()});c(c$,"layoutDialog",function(){this.dialog.startLayout();
this.addUniqueControls();this.isNumeric&&(this.getUnitOptions(),this.addCombo1&&(this.combo1=this.dialog.addSelectOption("cmbUnits","Units",this.unitOptions,this.unitPtr.intValue(),this.addUnits)),this.addApplyBtn&&this.dialog.addButton("btnApply","Apply"),this.showHideButton=this.dialog.addButton("btnShow","Show"),this.addClearBtn&&this.dialog.addButton("btnClear","Clear"));this.dialog.endLayout();this.checkEnables();this.dialog.setVisible(this.defaultVisible)});c(c$,"callbackAD",function(a,b){if(a.equals("FOCUS"))this.eventFocus();
else if(a.equals("tableSelect"))this.tableSelect(b);else if(a.equals("btnClear"))this.clear();else if(a.equals("btnApply"))this.eventApply();else if(a.equals("btnShow")){var c=this.dialog.getText(this.showHideButton);this.eventShowHide(c.equals("Show"))}else if(a.equals("cmbUnits"))this.setPrecision(this.dialog.getSelectedIndex(this.combo1));else if(a.startsWith("txt"))this.eventApply();else if(a.equals("windowClosing"))return this.done(),!0;null!=this.jsvp&&this.jsvp.doRepaint(!0);return!0},"~S,~S");
c(c$,"addUniqueControls",function(){},"JSV.dialog.DialogManager");e(c$,"getAType",function(){return this.type});e(c$,"getGraphSetKey",function(){return this.graphSetKey});e(c$,"setGraphSetKey",function(a){this.graphSetKey=a},"~S");e(c$,"getSpectrum",function(){return this.$spec});e(c$,"getState",function(){return this.isON});e(c$,"setState",function(a){this.isON=a},"~B");c(c$,"checkEnables",function(){var a=this.checkVisible();this.dialog.setText(this.showHideButton,a?"Hide":"Show")});c(c$,"createTable",
function(a,b,c){this.tableData=a;this.dialog.createTable(a,b,c)},"~A,~A,~A");c(c$,"setTableSelectionEnabled",function(a){this.dialog.setCellSelectionEnabled(a)},"~B");c(c$,"getParameters",function(){return this.myParams});c(c$,"showMessage",function(a,b,c){this.manager.showMessageDialog(this.dialog,a,b,c)},"~S,~S,~N");c(c$,"setThreshold",function(a){this.dialog.setText(this.txt1,this.getThreasholdText(a))},"~N");c(c$,"setComboSelected",function(a){this.dialog.setSelectedIndex(this.combo1,a)},"~N");
c(c$,"applyFromFields",function(){this.apply(null)});c(c$,"reEnable",function(){this.paramsReEnable();return this});c(c$,"dispose",function(){this.dialog.dispose()});c(c$,"setVisible",function(a){this.dialog.setVisible(a)},"~B");e(c$,"isVisible",function(){return this.dialog.isVisible()});c(c$,"selectTableRow",function(a){this.dialog.selectTableRow(a)},"~N");c(c$,"repaint",function(){this.dialog.repaint()});c(c$,"setFields",function(){switch(this.type){case JSV.common.Annotation.AType.PeakList:this.myParams=
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c&&this.applyFromFields();if(null==this.xyData||null==a||20<c)break;c=0;var e=1E100;a=a.getXVal();var f=this.xyData;b=Math.abs(b/20);for(var h=f.size();0<=--h;){var k=Math.abs(a-f.get(h).getXVal());k<e&&(e=k,c=h)}e<b&&(this.selectTableRow(f.size()-2-c),this.repaint())}},"JSV.common.Coordinate,~N,~N");c(c$,"getPeakData",function(){var a=new JSV.common.PeakData(JSV.common.Annotation.AType.PeakList,this.$spec);a.setPeakList(this.myParams,this.precision,this.jsvp.getPanelData().getView());this.xyData=
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Exception))throw e;}},"~A");c(c$,"done",function(){null!=this.jsvp&&null!=this.$spec&&this.jsvp.getPanelData().removeDialog(this);null!=this.xyData&&this.xyData.setState(this.isON);this.saveDialogPosition(this.getPosXY());this.dispose();this.jsvp.doRepaint(!0)});c(c$,"restoreDialogPosition",function(a,b){if(null!=a){-2147483648==b[0]&&(b[0]=0,b[1]=-20);var c=this.manager.getLocationOnScreen(a),e=a.getHeight();this.loc=E(-1,[Math.max(0,c[0]+b[0]),Math.max(0,c[1]+e+b[1])]);this.dialog.setIntLocation(this.loc)}},
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-1));break;case JSV.common.Annotation.AType.PeakList:this.createData(),this.skipCreate=!0}});c(c$,"eventApply",function(){switch(this.type){case JSV.common.Annotation.AType.PeakList:this.createData(),this.skipCreate=!0}this.applyFromFields()});c(c$,"eventShowHide",function(a){(this.isON=a)&&this.eventApply();this.jsvp.doRepaint(!0);this.checkEnables()},"~B");c(c$,"clear",function(){this.setState(!0);null!=this.xyData&&(this.xyData.clear(),this.applyFromFields())});c(c$,"paramsReEnable",function(){switch(this.type){case JSV.common.Annotation.AType.PeakList:this.skipCreate=
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c.toString());this.checkEnables();break;case JSV.common.Annotation.AType.PeakList:try{switch(b){case 6:case 5:case 4:var f=Double.parseDouble(c),h=Double.parseDouble(this.tableData[a+3-b][1]);this.jsvp.getPanelData().setXPointers(this.$spec,f,this.$spec,h);break;default:this.jsvp.getPanelData().findX(this.$spec,Double.parseDouble(c))}}catch(k){if(y(k,Exception))this.jsvp.getPanelData().findX(this.$spec,1E100);else throw k;}this.jsvp.doRepaint(!1);break;case JSV.common.Annotation.AType.OverlayLegend:this.jsvp.getPanelData().setSpectrum(a,
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this.xyData.getDataHeader();c=E(-1,[40,65,65,50]);this.createTable(a,b,c);break;case JSV.common.Annotation.AType.PeakList:null==this.xyData&&this.createData();a=this.xyData.getMeasurementListArray(null);b=this.xyData.getDataHeader();c=E(-1,[40,65,50,50,50,50,50]);this.createTable(a,b,c);this.setTableSelectionEnabled(!0);break;case JSV.common.Annotation.AType.OverlayLegend:b=w(-1,["No.","Plot Color","Title"]),a=this.vwr.selectedPanel.getPanelData().getOverlayLegendData(),c=E(-1,[30,60,250]),this.createTable(a,
b,c),this.setTableSelectionEnabled(!0)}});c(c$,"createData",function(){switch(this.type){case JSV.common.Annotation.AType.Integration:this.xyData=new JSV.common.IntegralData(this.$spec,this.myParams);this.iSelected=-1;break;case JSV.common.Annotation.AType.PeakList:try{var a=Double.parseDouble(this.dialog.getText(this.txt1));this.myParams.peakListThreshold=a;this.myParams.peakListInterpolation=this.dialog.getSelectedItem(this.combo1).toString();this.myParams.precision=this.precision;var b=new JSV.common.PeakData(JSV.common.Annotation.AType.PeakList,
this.$spec);b.setPeakList(this.myParams,this.precision,this.jsvp.getPanelData().getView());this.xyData=b;this.loadData()}catch(c){if(!y(c,Exception))throw c;}}});c(c$,"setPrecision",function(a){this.precision=this.formatOptions[a]},"~N");c(c$,"tableSelect",function(a){if("true".equals(this.getField(a,"adjusting")))this.iColSelected=this.iRowSelected=-1,System.out.println("adjusting"+a);else{var b=JU.PT.parseInt(this.getField(a,"index"));switch("ROW COL ROWCOL".indexOf(this.getField(a,"selector"))){case 8:this.iColSelected=
JU.PT.parseInt(this.getField(a,"index2"));case 0:this.iRowSelected=b;System.out.println("r set to "+b);break;case 4:this.iColSelected=b,System.out.println("c set to "+b)}0<=this.iColSelected&&0<=this.iRowSelected&&this.tableCellSelect(this.iRowSelected,this.iColSelected)}},"~S");c(c$,"getField",function(a,b){a+="&";var c="&"+b+"=",e=a.indexOf(c);return 0>e?null:a.substring(e+c.length,a.indexOf("&",e+1))},"~S,~S")});s("JSV.exception");t(["java.lang.Exception"],"JSV.exception.JSVException",null,function(){c$=
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b,c){var e=null;if(a._buf32)return a._buf32;e=a.getImageData(0,0,b,c).data;return JSV.js2d.Image.toIntARGB(e)},"~O,~N,~N");c$.toIntARGB=c(c$,"toIntARGB",function(a){for(var b=x(a.length/4),c=E(b,0),e=0,f=0;e<b;f++)c[e++]=a[f++]<<16|a[f++]<<8|a[f++]|4278190080;return c},"~A");c$.fromIntARGB=c(c$,"fromIntARGB",function(a,b){for(var c=b.length>>2,e=0,f=0;e<c;e++)b[f++]=a[e]>>16&255,b[f++]=a[e]>>8&255,b[f++]=a[e]&255,b[f++]=255},"~A,~A");c$.getTextPixels=c(c$,"getTextPixels",function(a,b,c,e,f,h){c.fillStyle=
"#000000";c.fillRect(0,0,e,f);c.fillStyle="#FFFFFF";c.font=b.font;c.fillText(a,0,h);return JSV.js2d.Image.grabPixels(c,e,f)},"~S,JU.Font,~O,~N,~N,~N");c$.allocateRgbImage=c(c$,"allocateRgbImage",function(a,b,c,e,f,h){null==h&&(h={width:a,height:b});h.buf32=c},"~N,~N,~A,~N,~B,~O");c$.getStaticGraphics=c(c$,"getStaticGraphics",function(a){return JSV.js2d.Image.getGraphics(a)},"~O,~B");c$.getGraphics=c(c$,"getGraphics",function(a){return a.getContext("2d")},"~O");c$.drawImage=c(c$,"drawImage",function(a,
b,c,e){this.fromIntARGB(b.buf32,b.buf8);a.putImageData(b.imgdata,c,e)},"~O,~O,~N,~N,~N,~N");s("JSV.js2d");t(["J.api.GenericFileInterface"],"JSV.js2d.JsFile",["JU.PT","JSV.common.JSVFileManager"],function(){c$=k(function(){this.fullName=this.name=null;m(this,arguments)},JSV.js2d,"JsFile",null,J.api.GenericFileInterface);c$.newFile=c(c$,"newFile",function(a){return new JSV.js2d.JsFile(a)},"~S");n(c$,function(a){this.name=a.$replace("\\","/");this.fullName=a;!this.fullName.startsWith("/")&&0>JSV.common.JSVFileManager.urlTypeIndex(a)&&
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b)this.vwr.selectedPanel.showMessage(a,"File Open Error");else{var e=null==c?null:"",f=!1,f=c[0],e=c[1];this.vwr.si.siOpenDataOrFile(String.instantialize(b),"cache://"+a,null,null,-1,-1,f,null,null);null!=e&&this.vwr.runScript(e)}},"~S,~O,~A");e(c$,"getUrlFromDialog",function(a,b){return prompt(a,b)},"~S,~S")});s("JSV.js2d");c$=u(JSV.js2d,"JsFont");c$.newFont=c(c$,"newFont",function(a,b,c,e,f){a=a.equals("Monospaced")?"Courier":a.startsWith("Sans")?"Sans-Serif":"Serif";return(b?"bold ":"")+(c?"italic ":
"")+e+f+" "+a},"~S,~B,~B,~N,~S");c$.getFontMetrics=c(c$,"getFontMetrics",function(a,b){b.font!=a.font&&(b.font=a.font,a.font=b.font,b._fontAscent=Math.ceil(a.fontSize),b._fontDescent=Math.ceil(0.25*a.fontSize));return b},"JU.Font,~O");c$.getAscent=c(c$,"getAscent",function(a){return Math.ceil(a._fontAscent)},"~O");c$.getDescent=c(c$,"getDescent",function(a){return Math.ceil(a._fontDescent)},"~O");c$.stringWidth=c(c$,"stringWidth",function(a,b){a.fontMetrics.font=a.font;return Math.ceil(a.fontMetrics.measureText(b).width)},
"JU.Font,~S");s("JSV.js2d");t(["J.api.GenericGraphics"],"JSV.js2d.JsG2D",["JU.CU","JSV.common.JSViewer","JS.Color"],function(){c$=k(function(){this.windowHeight=this.windowWidth=0;this.inPath=this.isShifted=!1;m(this,arguments)},JSV.js2d,"JsG2D",null,J.api.GenericGraphics);n(c$,function(){});e(c$,"getColor4",function(a,b,c,e){return JS.Color.get4(a,b,c,e)},"~N,~N,~N,~N");e(c$,"getColor3",function(a,b,c){return JS.Color.get3(a,b,c)},"~N,~N,~N");e(c$,"getColor1",function(a){return JS.Color.get1(a)},
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"drawLine",function(a,b,c,e,f){var h=this.inPath;h||a.beginPath();a.moveTo(b,c);a.lineTo(e,f);h||a.stroke()},"~O,~N,~N,~N,~N");e(c$,"drawCircle",function(a,b,c,e){e/=2;a.beginPath();a.arc(b+e,c+e,e,0,2*Math.PI,!1);a.stroke()},"~O,~N,~N,~N");e(c$,"drawPolygon",function(a,b,c,e){this.doPoly(a,b,c,e,!1)},"~O,~A,~A,~N");c(c$,"doPoly",function(a,b,c,e,f){a.beginPath();a.moveTo(b[0],c[0]);for(var h=1;h<e;h++)a.lineTo(b[h],c[h]);f?a.fill():a.stroke()},"~O,~A,~A,~N,~B");e(c$,"drawRect",function(a,b,c,e,f){a.beginPath();
a.rect(b,c,e,f);a.stroke()},"~O,~N,~N,~N,~N");e(c$,"drawString",function(a,b,c,e){a.fillText(b,c,e)},"~O,~S,~N,~N");e(c$,"drawStringRotated",function(){},"~O,~S,~N,~N,~N");e(c$,"fillBackground",function(a,b){null==b?(this.isShifted||(a.translate(-0.5,-0.5),this.isShifted=!0),a.clearRect(0,0,this.windowWidth,this.windowHeight)):(this.setGraphicsColor(a,b),this.fillRect(a,0,0,this.windowWidth,this.windowHeight))},"~O,javajs.api.GenericColor");e(c$,"fillCircle",function(a,b,c,e){e/=2;a.beginPath();a.arc(b+
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a.initialStartIndex,a.initialEndIndex);return c},"JSV.common.JSViewer,JU.Lst");n(c$,function(a,b){this.vwr=a;this.pd=b?new JSV.common.PanelData(this,a):null;this.apiPlatform=a.apiPlatform;this.mouse=this.apiPlatform.getMouseManager(0,this)},"JSV.common.JSViewer,~B");e(c$,"getTitle",function(){return this.pd.getTitle()});e(c$,"dispose",function(){null!=this.pd&&this.pd.dispose();this.pd=null;this.mouse.dispose();this.mouse=null});e(c$,"setTitle",function(a){this.name=this.pd.title=a},"~S");c(c$,"setColorOrFont",
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this.freq2dY;a.setFilePath(this.filePath);a.nH=this.nH},"JSV.source.JDXDataObject");c(c$,"getTypeLabel",function(){return this.isNMR()?this.nucleusX+"NMR":this.dataType});c(c$,"getDefaultAnnotationInfo",function(a){var b,c=this.isNMR();switch(a){case JSV.common.Annotation.AType.Integration:return w(-1,[null,E(-1,[1]),null]);case JSV.common.Annotation.AType.Measurements:return a=c?w(-1,["Hz","ppm"]):w(-1,[""]),b=this.isHNMR()?E(-1,[1,4]):E(-1,[1,3]),w(-1,[a,b,Integer.$valueOf(0)]);case JSV.common.Annotation.AType.PeakList:return a=
c?w(-1,["Hz","ppm"]):w(-1,[""]),b=this.isHNMR()?E(-1,[1,2]):E(-1,[1,1]),w(-1,[a,b,Integer.$valueOf(c?1:0)])}return null},"JSV.common.Annotation.AType");c(c$,"getPeakListArray",function(a,b,c){var e=a.getXVal();a=a.getYVal();this.isNMR()&&(a/=c);c=Math.abs(e-b[0]);b[0]=e;var f=c+b[1];b[1]=c;var h=f+b[2];b[2]=f;return this.isNMR()?L(-1,[e,a,e*this.observedFreq,20<c*this.observedFreq?0:c*this.observedFreq,20<f*this.observedFreq?0:f*this.observedFreq,20<h*this.observedFreq?0:h*this.observedFreq]):L(-1,
[e,a])},"JSV.common.Measurement,~A,~N");D(c$,"ERROR",1.7976931348623157E308,"SCALE_NONE",0,"SCALE_TOP",1,"SCALE_BOTTOM",2,"SCALE_TOP_BOTTOM",3,"gyroData",L(-1,[1,42.5774806,2,6.53590131,3,45.4148,3,32.436,6,6.2661,7,16.5483,9,5.9842,10,4.5752,11,13.663,13,10.70839657,14,3.07770646,15,4.3172657,17,5.7742,19,40.07757016,21,3.3631,23,11.26952167,25,2.6083,27,11.1031,29,8.4655,31,17.2514409,33,3.2717,35,4.1765,37,3.4765,37,5.819,39,3.46,39,1.9893,40,2.4737,41,1.0919,43,2.8688,45,10.3591,47,2.4041,49,
2.4048,50,4.2505,51,11.2133,53,2.4115,55,10.5763,57,1.3816,59,10.077,61,3.8114,63,11.2982,65,12.103,67,2.6694,69,10.2478,71,13.0208,73,1.4897,75,7.315,77,8.1571,79,10.7042,81,11.5384,83,1.6442,85,4.1254,87,13.9811,87,1.8525,89,2.0949,91,3.9748,93,10.4523,95,2.7874,97,2.8463,99,9.6294,99,1.9553,101,2.1916,103,1.3477,105,1.957,107,1.7331,109,1.9924,111,9.0692,113,9.4871,113,9.3655,115,9.3856,115,14.0077,117,15.261,119,15.966,121,10.2551,123,5.5532,123,11.2349,125,13.5454,127,8.5778,129,11.8604,131,
3.5159,133,5.6234,135,4.2582,137,4.7634,138,5.6615,139,6.0612,137,4.88,139,5.39,141,2.37,141,13.0359,143,2.319,145,1.429,143,11.59,147,5.62,147,1.7748,149,14631,151,10.5856,153,4.6745,155,1.312,157,1.72,159,10.23,161,1.4654,163,2.0508,165,9.0883,167,1.2281,169,3.531,171,7.5261,173,2.073,175,4.8626,176,3.451,177,1.7282,179,1.0856,180,4.087,181,5.1627,183,1.7957,185,9.7176,187,9.817,187,0.9856,189,3.3536,191,0.7658,191,0.8319,195,9.2922,197,0.7406,199,7.7123,201,2.8469,203,24.7316,205,24.9749,207,9.034,
209,6.963,209,11.7,211,9.16,223,5.95,223,1.3746,225,11.187,227,5.6,229,1.4,231,10.2,235,0.83,237,9.57,239,3.09,243,4.6,1E100]))});s("JSV.source");t(null,"JSV.source.JDXDecompressor",["java.lang.Double","JSV.common.Coordinate","JU.Logger"],function(){c$=k(function(){this.lineNumber=this.ich=this.nPoints=this.deltaX=this.yFactor=this.xFactor=0;this.t=null;this.dx=this.firstX=0;this.maxY=4.9E-324;this.minY=1.7976931348623157E308;this.debugging=!1;this.xyCoords=null;this.ipt=0;this.lastLine=this.line=
null;this.lineLen=0;this.errorLog=null;this.lastDif=this.difVal=-2147483648;this.yval=this.xval=this.dupCount=0;this.firstLastX=null;m(this,arguments)},JSV.source,"JDXDecompressor");c(c$,"getMinY",function(){return this.minY});c(c$,"getMaxY",function(){return this.maxY});n(c$,function(a,b,c,e,f,h){this.t=a;this.firstX=b;this.xFactor=c;this.yFactor=e;this.deltaX=f;this.nPoints=h;this.lineNumber=a.labelLineNo;this.debugging=JU.Logger.isActiveLevel(6)},"JSV.source.JDXSourceStreamTokenizer,~N,~N,~N,~N,~N");
c(c$,"addPoint",function(a){if(this.ipt==this.xyCoords.length){var b=Array(2*this.ipt);System.arraycopy(this.xyCoords,0,b,0,this.ipt);this.xyCoords=b}b=a.getYVal();b>this.maxY?this.maxY=b:b<this.minY&&(this.minY=b);this.debugging&&this.logError("Coord: "+this.ipt+a);this.xyCoords[this.ipt++]=a;this.firstLastX[1]=a.getXVal()},"JSV.common.Coordinate");c(c$,"decompressData",function(a,b){this.errorLog=a;this.firstLastX=b;this.debugging&&this.logError("firstX="+this.firstX+" xFactor="+this.xFactor+" yFactor="+
this.yFactor+" deltaX="+this.deltaX+" nPoints="+this.nPoints);this.testAlgorithm();this.xyCoords=Array(this.nPoints);var c=Math.abs(0.35*this.deltaX),e=Math.abs(1.4*this.deltaX),f=Math.abs(0.6*this.deltaX);try{for(;null!=(this.line=this.t.readLineTrimmed())&&0>this.line.indexOf("##");)if(this.lineNumber++,this.debugging&&this.logError(this.lineNumber+"\t"+this.line),0!=(this.lineLen=this.line.length)){this.ich=0;var h=-2147483648!=this.lastDif;this.xval=this.getValueDelim()*this.xFactor;0==this.ipt&&
(b[0]=this.xval,this.dx=this.firstX-this.xval);this.xval+=this.dx;var k=(new JSV.common.Coordinate).set(this.xval,(this.yval=this.getYValue())*this.yFactor);if(0==this.ipt)this.addPoint(k);else{var j=this.xyCoords[this.ipt-1],l=Math.abs(j.getXVal()-k.getXVal());if(h&&l<c){this.xyCoords[this.ipt-1]=k;var m=j.getYVal(),n=k.getYVal();n!=m&&this.logError(this.lastLine+"\n"+this.line+"\nY-value Checkpoint Error! Line "+this.lineNumber+" for y1="+n+" y0="+m)}else this.addPoint(k),(l<f||l>e)&&this.logError(this.lastLine+
"\n"+this.line+"\nX-sequence Checkpoint Error! Line "+this.lineNumber+" |x1-x0|="+l+" instead of "+Math.abs(this.deltaX)+" for x1="+k.getXVal()+" x0="+j.getXVal())}for(;this.ich<this.lineLen||-2147483648!=this.difVal||0<this.dupCount;)this.xval+=this.deltaX,Double.isNaN(this.yval=this.getYValue())||this.addPoint((new JSV.common.Coordinate).set(this.xval,this.yval*this.yFactor));this.lastLine=this.line}}catch(q){if(!y(q,java.io.IOException))throw q;}this.nPoints!=this.ipt&&(this.logError("Decompressor did not find "+
this.nPoints+" points -- instead "+this.ipt),c=Array(this.ipt),System.arraycopy(this.xyCoords,0,c,0,this.ipt),this.xyCoords=c);return 0<this.deltaX?this.xyCoords:JSV.common.Coordinate.reverse(this.xyCoords)},"JU.SB,~A");c(c$,"logError",function(a){this.debugging&&JU.Logger.debug(a);this.errorLog.append(a).appendC("\n")},"~S");c(c$,"getYValue",function(){if(0<this.dupCount)return--this.dupCount,this.yval=-2147483648==this.lastDif?this.yval:this.yval+this.lastDif;if(-2147483648!=this.difVal)return this.yval+=
this.difVal,this.lastDif=this.difVal,this.difVal=-2147483648,this.yval;if(this.ich==this.lineLen)return NaN;var a=this.line.charAt(this.ich);this.debugging&&JU.Logger.info(""+a);switch(a){case "%":this.difVal=0;break;case "J":case "K":case "L":case "M":case "N":case "O":case "P":case "Q":case "R":this.difVal=a.charCodeAt(0)-73;break;case "j":case "k":case "l":case "m":case "n":case "o":case "p":case "q":case "r":this.difVal=105-a.charCodeAt(0);break;case "S":case "T":case "U":case "V":case "W":case "X":case "Y":case "Z":this.dupCount=
a.charCodeAt(0)-82;break;case "s":this.dupCount=9;break;case "+":case "-":case ".":case "0":case "1":case "2":case "3":case "4":case "5":case "6":case "7":case "8":case "9":case "@":case "A":case "B":case "C":case "D":case "E":case "F":case "G":case "H":case "I":case "a":case "b":case "c":case "d":case "e":case "f":case "g":case "h":case "i":return this.lastDif=-2147483648,this.getValue();case "?":return this.lastDif=-2147483648,NaN;default:return this.ich++,this.lastDif=-2147483648,this.getYValue()}this.ich++;
-2147483648!=this.difVal?this.difVal=this.getDifDup(this.difVal):this.dupCount=this.getDifDup(this.dupCount)-1;return this.getYValue()});c(c$,"getDifDup",function(a){var b=this.ich;this.next();var c=a+this.line.substring(b,this.ich);return b==this.ich?a:Integer.$valueOf(c).intValue()},"~N");c(c$,"getValue",function(){var a=this.ich;if(this.ich==this.lineLen)return NaN;var a=this.line.charAt(this.ich),b=0;switch(a){case "+":case "-":case ".":case "0":case "1":case "2":case "3":case "4":case "5":case "6":case "7":case "8":case "9":return this.getValueDelim();
case "@":case "A":case "B":case "C":case "D":case "E":case "F":case "G":case "H":case "I":b=a.charCodeAt(0)-64;a=++this.ich;break;case "a":case "b":case "c":case "d":case "e":case "f":case "g":case "h":case "i":b=96-a.charCodeAt(0);a=++this.ich;break;default:return this.ich++,this.getValue()}this.next();return Double.$valueOf(b+this.line.substring(a,this.ich)).doubleValue()});c(c$,"getValueDelim",function(){for(var a=this.ich,b="\x00";this.ich<this.lineLen&&0<=" ,\t\n".indexOf(b=this.line.charAt(this.ich));)this.ich++;
var c=1;switch(b){case "-":c=-1;case "+":a=++this.ich}b=this.next();if("E"==b&&this.ich+3<this.lineLen)switch(this.line.charAt(this.ich+1)){case "-":case "+":this.ich+=4,this.ich<this.lineLen&&("0"<=(b=this.line.charAt(this.ich))&&"9">=b)&&this.ich++}return c*Double.$valueOf(this.line.substring(a,this.ich)).doubleValue()});c(c$,"next",function(){for(;this.ich<this.lineLen&&0>"+-%@ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrs? ,\t\n".indexOf(this.line.charAt(this.ich));)this.ich++;return this.ich==
this.lineLen?"\x00":this.line.charAt(this.ich)});c(c$,"testAlgorithm",function(){});D(c$,"allDelim","+-%@ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrs? ,\t\n","WHITE_SPACE"," ,\t\n")});s("JSV.source");t(["JU.Lst"],"JSV.source.JDXHeader",null,function(){c$=k(function(){this.title="";this.jcampdx="5.01";this.origin=this.dataClass=this.dataType="";this.owner="PUBLIC DOMAIN";this.time=this.date=this.longDate="";this.headerTable=this.qualifiedType=null;m(this,arguments)},JSV.source,"JDXHeader");F(c$,function(){this.headerTable=
new JU.Lst});c(c$,"setTitle",function(a){this.title=a},"~S");c(c$,"setJcampdx",function(a){this.jcampdx=a},"~S");c(c$,"setDataType",function(a){this.dataType=a},"~S");c(c$,"setDataClass",function(a){this.dataClass=a},"~S");c(c$,"setOrigin",function(a){this.origin=a},"~S");c(c$,"setOwner",function(a){this.owner=a},"~S");c(c$,"setLongDate",function(a){this.longDate=a},"~S");c(c$,"setDate",function(a){this.date=a},"~S");c(c$,"setTime",function(a){this.time=a},"~S");c(c$,"getTitle",function(){return this.title});
c$.getTypeName=c(c$,"getTypeName",function(a){a=a.toUpperCase();for(var b=0;b<JSV.source.JDXHeader.typeNames.length;b++)if(JSV.source.JDXHeader.typeNames[b].startsWith(a))return JSV.source.JDXHeader.typeNames[b].substring(18);return a},"~S");c(c$,"getQualifiedDataType",function(){return null==this.qualifiedType?this.qualifiedType=JSV.source.JDXHeader.getTypeName(this.dataType):this.qualifiedType});c(c$,"getJcampdx",function(){return this.jcampdx});c(c$,"getDataType",function(){return this.dataType});
c(c$,"getOrigin",function(){return this.origin});c(c$,"getOwner",function(){return this.owner});c(c$,"getLongDate",function(){return this.longDate});c(c$,"getDate",function(){return this.date});c(c$,"getTime",function(){return this.time});c(c$,"getDataClass",function(){return this.dataClass});c(c$,"setHeaderTable",function(a){this.headerTable=a},"JU.Lst");c(c$,"getHeaderTable",function(){return this.headerTable});c(c$,"getHeaderRowDataAsArray",function(a,b){var c=Array((a?6:5)+this.headerTable.size()+
b),e=0;c[e++]=w(-1,["##TITLE",this.title]);c[e++]=w(-1,["##JCAMP-DX",this.jcampdx]);c[e++]=w(-1,["##DATA TYPE",this.dataType]);a&&(c[e++]=w(-1,["##DATA CLASS",this.dataClass]));c[e++]=w(-1,["##ORIGIN",this.origin]);c[e++]=w(-1,["##OWNER",this.owner]);for(var f=0;f<this.headerTable.size();f++)c[e++]=this.getRow(f);return c},"~B,~N");c(c$,"getRow",function(a){a=this.headerTable.get(a);return[a[0],JU.PT.rep(a[1],"<","&lt;")]},"~N");D(c$,"typeNames",w(-1,"ND NMR SPECTRUM   NMR;NMR SPECTRUM      NMR;INFRARED SPECTRUM IR;MASS SPECTRUM     MS;RAMAN SPECTRUM    RAMAN;GAS CHROMATOGRAM  GC;UV/VIS SPECTRUM   UV/VIS".split(";")))});
s("JSV.source");t(["J.api.JmolJDXMOLReader"],"JSV.source.JDXReader","java.io.BufferedReader $.InputStream $.StringReader java.lang.Double $.Float java.util.Hashtable $.StringTokenizer JU.AU $.Lst $.PT $.SB JSV.api.JSVZipReader JSV.common.Coordinate $.JSVFileManager $.JSViewer $.PeakInfo $.Spectrum JSV.exception.JSVException JSV.source.JDXDecompressor $.JDXSource $.JDXSourceStreamTokenizer JU.Logger".split(" "),function(){c$=k(function(){this.nmrMaxY=NaN;this.errorLog=this.t=this.source=null;this.isZipFile=
this.done=this.obscure=!1;this.filePath=null;this.loadImaginary=!0;this.isTabularData=this.ignoreShiftReference=this.isSimulation=!1;this.blockID=this.nSpec=this.lastSpec=this.firstSpec=0;this.peakData=this.acdMolFile=this.acdAssignments=this.modelSpectrum=this.reader=this.mpr=null;m(this,arguments)},JSV.source,"JDXReader",null,J.api.JmolJDXMOLReader);c$.getVarList=c(c$,"getVarList",function(a){a=JSV.source.JDXReader.VAR_LIST_TABLE[0].indexOf(a);return JSV.source.JDXReader.VAR_LIST_TABLE[1].substring(a+
1,a+12).trim()},"~S");n(c$,function(a,b,c,e,f,h){a=JU.PT.trimQuotes(a);if(this.isSimulation=null!=a&&a.startsWith("http://SIMULATION/"))this.nmrMaxY=Float.isNaN(h)?1E4:h;this.filePath=a;this.obscure=b;this.firstSpec=e;this.lastSpec=f;this.loadImaginary=c},"~S,~B,~B,~N,~N,~N");c$.createJDXSourceFromStream=c(c$,"createJDXSourceFromStream",function(a,b,c,e){return JSV.source.JDXReader.createJDXSource(a,"stream",b,c,-1,-1,e)},"java.io.InputStream,~B,~B,~N");c$.createJDXSource=c(c$,"createJDXSource",function(a,
b,c,e,f,h,k){var j=null;v(a,String)||JU.AU.isAB(a)?(v(a,String)&&(j=a),a=JSV.common.JSVFileManager.getBufferedReaderForStringOrBytes(a)):a=v(a,java.io.InputStream)?JSV.common.JSVFileManager.getBufferedReaderForInputStream(a):a;var l=null;try{null==a&&(a=JSV.common.JSVFileManager.getBufferedReaderFromName(b,"##TITLE"));a.mark(400);var m=V(400,"\x00");a.read(m,0,400);a.reset();var l=String.instantialize(m),m=null,n=l.indexOf("#"),q=l.indexOf("<");if(0>n||0<=q&&q<n){var s=l.toLowerCase(),s=s.contains("<animl")||
s.contains("<!doctype technique")?"AnIML":s.contains("xml-cml")?"CML":null;null!=s&&(m=JSV.common.JSViewer.getInterface("JSV.source."+s+"Reader").getSource(b,a));a.close();if(null==m)throw JU.Logger.error(l+"..."),new JSV.exception.JSVException("File type not recognized");}else m=(new JSV.source.JDXReader(b,c,e,f,h,k)).getJDXSource(a);null!=j&&m.setInlineData(j);return m}catch(t){if(y(t,Exception))throw null!=a&&a.close(),null!=l&&JU.Logger.error(l+"..."),b=t.getMessage(),new JSV.exception.JSVException("Error reading data: "+
b);throw t;}},"~O,~S,~B,~B,~N,~N,~N");c(c$,"getJDXSource",function(a){this.source=new JSV.source.JDXSource(0,this.filePath);this.isZipFile=v(a,JSV.api.JSVZipReader);this.t=new JSV.source.JDXSourceStreamTokenizer(a);this.errorLog=new JU.SB;for(var b=a=null,c=!1;!this.done&&"##TITLE".equals(this.t.peakLabel());){c=!0;null!=a&&!this.isZipFile&&this.errorLog.append("Warning - file is a concatenation without LINK record -- does not conform to IUPAC standards!\n");for(var e=new JSV.common.Spectrum,f=new JU.Lst;!this.done&&
null!=(a=this.t.getLabel())&&null!=(b=this.getValue(a));)if(this.isTabularData){this.setTabularDataType(e,a);if(!this.processTabularData(e,f))throw new JSV.exception.JSVException("Unable to read JDX file");this.addSpectrum(e,!1);this.isSimulation&&e.getXUnits().equals("PPM")&&e.setHZtoPPM(!0);e=null}else a.equals("##DATATYPE")&&b.toUpperCase().equals("LINK")?(this.getBlockSpectra(f),e=null):a.equals("##NTUPLES")||a.equals("##VARNAME")?(this.getNTupleSpectra(f,e,a),e=null):(a.equals("##JCAMPDX")&&
this.setVenderSpecificValues(this.t.rawLine),null==e&&(e=new JSV.common.Spectrum),this.readDataLabel(e,a,b,this.errorLog,this.obscure)||(JSV.source.JDXReader.addHeader(f,this.t.rawLabel,b),this.checkCustomTags(e,a,b)))}if(!c)throw new JSV.exception.JSVException("##TITLE record not found");this.source.setErrorLog(this.errorLog.toString());return this.source},"~O");c(c$,"setVenderSpecificValues",function(a){0<=a.indexOf("JEOL")&&(System.out.println("Skipping ##SHIFTREFERENCE for JEOL "+a),this.ignoreShiftReference=
!0)},"~S");c(c$,"getValue",function(a){var b=this.isTabularDataLabel(a)?"":this.t.getValue();return"##END".equals(a)?null:b},"~S");c(c$,"isTabularDataLabel",function(a){return this.isTabularData=0<="##DATATABLE##PEAKTABLE##XYDATA##XYPOINTS#".indexOf(a+"#")},"~S");c(c$,"addSpectrum",function(a,b){if(!this.loadImaginary&&a.isImaginary())return JU.Logger.info("FileReader skipping imaginary spectrum -- use LOADIMAGINARY TRUE to load this spectrum."),!0;if(null!=this.acdAssignments){if(!a.dataType.equals("MASS SPECTRUM")&&
!a.isContinuous())return JU.Logger.info("Skipping ACD Labs line spectrum for "+a),!0;if(0<this.acdAssignments.size())try{this.mpr.setACDAssignments(a.title,a.getTypeLabel(),this.source.peakCount,this.acdAssignments,this.acdMolFile)}catch(c){if(y(c,Exception))JU.Logger.info("Failed to create peak data: "+c);else throw c;}null!=this.acdMolFile&&JSV.common.JSVFileManager.cachePut("mol",this.acdMolFile)}Float.isNaN(this.nmrMaxY)?1E4<=a.getMaxY()&&a.doNormalize(1E3):a.doNormalize(this.nmrMaxY);this.isSimulation&&
a.setSimulated(this.filePath);this.nSpec++;if(0<this.firstSpec&&this.nSpec<this.firstSpec)return!0;if(0<this.lastSpec&&this.nSpec>this.lastSpec)return!(this.done=!0);a.setBlockID(this.blockID);this.source.addJDXSpectrum(null,a,b);return!0},"JSV.common.Spectrum,~B");c(c$,"getBlockSpectra",function(a){JU.Logger.debug("--JDX block start--");for(var b="",c=null,e=0==this.source.type,f=!1;null!=(b=this.t.getLabel())&&!b.equals("##TITLE");)c=this.getValue(b),e&&!JSV.source.JDXReader.readHeaderLabel(this.source,
b,c,this.errorLog,this.obscure)&&JSV.source.JDXReader.addHeader(a,this.t.rawLabel,c),b.equals("##BLOCKS")&&100<JU.PT.parseInt(c)&&0>=this.firstSpec&&(f=!0);c=this.getValue(b);if(!"##TITLE".equals(b))throw new JSV.exception.JSVException("Unable to read block source");e&&this.source.setHeaderTable(a);this.source.type=1;this.source.isCompoundSource=!0;e=new JSV.common.Spectrum;a=new JU.Lst;this.readDataLabel(e,b,c,this.errorLog,this.obscure);try{for(var h;null!=(h=this.t.getLabel());){if(null==(c=this.getValue(h))&&
"##END".equals(b)){JU.Logger.debug("##END= "+this.t.getValue());break}b=h;if(this.isTabularData){if(this.setTabularDataType(e,b),!this.processTabularData(e,a))throw new JSV.exception.JSVException("Unable to read Block Source");}else{if(b.equals("##DATATYPE")&&c.toUpperCase().equals("LINK"))this.getBlockSpectra(a),b=e=null;else if(b.equals("##NTUPLES")||b.equals("##VARNAME"))this.getNTupleSpectra(a,e,b),e=null,b="";if(this.done)break;if(null==e){e=new JSV.common.Spectrum;a=new JU.Lst;if(""===b)continue;
if(null==b){b="##END";continue}}if(null==c){if(0<e.getXYCoords().length&&!this.addSpectrum(e,f))return this.source;e=new JSV.common.Spectrum;a=new JU.Lst}else this.readDataLabel(e,b,c,this.errorLog,this.obscure)||(JSV.source.JDXReader.addHeader(a,this.t.rawLabel,c),this.checkCustomTags(e,b,c))}}}catch(k){if(y(k,Exception))throw new JSV.exception.JSVException(k.getMessage());throw k;}this.addErrorLogSeparator();this.source.setErrorLog(this.errorLog.toString());JU.Logger.debug("--JDX block end--");
return this.source},"JU.Lst");c(c$,"addErrorLogSeparator",function(){0<this.errorLog.length()&&this.errorLog.lastIndexOf("=====================\n")!=this.errorLog.length()-22&&this.errorLog.append("=====================\n")});c(c$,"getNTupleSpectra",function(a,b,c){var e=L(-1,[1.7976931348623157E308,4.9E-324]);this.blockID=Math.random();0<this.firstSpec&&(b.numDim=1);var f=c.equals("##VARNAME");f||(c="");var h=new java.util.Hashtable,k=Array(2);0==this.source.type&&(this.source.type=2,this.source.isCompoundSource=
!0,this.source.setHeaderTable(a));for(;!(c=f?c:this.t.getLabel()).equals("##PAGE");){for(var f=!1,j=new java.util.StringTokenizer(this.t.getValue(),","),l=new JU.Lst;j.hasMoreTokens();)l.addLast(j.nextToken().trim());h.put(c,l)}f=h.get("##SYMBOL");if(!c.equals("##PAGE"))throw new JSV.exception.JSVException("Error Reading NTuple Source");for(var j=this.t.getValue(),l=null,m=!0;!this.done;){if((c=this.t.getLabel()).equals("##ENDNTUPLES")){this.t.getValue();break}if(c.equals("##PAGE"))j=this.t.getValue();
else{if(null==l&&(l=new JSV.common.Spectrum,b.copyTo(l),l.setTitle(b.getTitle()),!l.is1D())){var n=j.indexOf("=");if(0<=n)try{l.setY2D(Double.parseDouble(j.substring(n+1).trim()));var q=j.substring(0,n).trim(),s=f.indexOf(q);0<=s&&l.setY2DUnits(h.get("##UNITS").get(s))}catch(t){if(!y(t,Exception))throw t;}}n=new JU.Lst;for(l.setHeaderTable(n);!c.equals("##DATATABLE");)JSV.source.JDXReader.addHeader(n,this.t.rawLabel,this.t.getValue()),c=this.t.getLabel();c=!0;s=this.t.flushLine();0<s.trim().indexOf("PEAKS")&&
(c=!1);var u=s.indexOf("("),v=s.lastIndexOf(")");if(-1==u||-1==v)throw new JSV.exception.JSVException("Variable List not Found");u=s.substring(u,v+1);for(s=v=0;s<f.size();s++){var w=f.get(s).trim();-1!=u.indexOf(w)&&(k[v++]=w);if(2==v)break}this.setTabularDataType(l,"##"+(c?"XYDATA":"PEAKTABLE"));if(!this.readNTUPLECoords(l,h,k,e))throw new JSV.exception.JSVException("Unable to read Ntuple Source");l.nucleusX.equals("?")||(b.nucleusX=l.nucleusX);b.nucleusY=l.nucleusY;b.freq2dX=l.freq2dX;b.freq2dY=
l.freq2dY;b.y2DUnits=l.y2DUnits;for(s=0;s<a.size();s++)c=a.get(s),u=JSV.source.JDXSourceStreamTokenizer.cleanLabel(c[0]),!u.equals("##TITLE")&&(!u.equals("##DATACLASS")&&!u.equals("##NTUPLES"))&&n.addLast(c);this.addSpectrum(l,!m);m=!1;l=null}}this.addErrorLogSeparator();this.source.setErrorLog(this.errorLog.toString());JU.Logger.info("NTUPLE MIN/MAX Y = "+e[0]+" "+e[1]);return this.source},"JU.Lst,JSV.source.JDXDataObject,~S");c(c$,"readDataLabel",function(a,b,c,e,f){if(JSV.source.JDXReader.readHeaderLabel(a,
b,c,e,f))return!0;b+=" ";if(0<="##MINX ##MINY ##MAXX ##MAXY ##FIRSTY ##DELTAX ##DATACLASS ".indexOf(b))return!0;switch("##FIRSTX  ##LASTX   ##NPOINTS ##XFACTOR ##YFACTOR ##XUNITS  ##YUNITS  ##XLABEL  ##YLABEL  ##NUMDIM  ##OFFSET  ".indexOf(b)){case 0:return a.fileFirstX=Double.parseDouble(c),!0;case 10:return a.fileLastX=Double.parseDouble(c),!0;case 20:return a.nPointsFile=Integer.parseInt(c),!0;case 30:return a.xFactor=Double.parseDouble(c),!0;case 40:return a.yFactor=Double.parseDouble(c),!0;case 50:return a.setXUnits(c),
!0;case 60:return a.setYUnits(c),!0;case 70:a.setXLabel(c);break;case 80:a.setYLabel(c);break;case 90:return a.numDim=Integer.parseInt(c),!0;case 100:0!=a.shiftRefType&&(1.7976931348623157E308==a.offset&&(a.offset=Double.parseDouble(c)),a.dataPointNum=1,a.shiftRefType=1);break;default:if(17>b.length)break;if(b.equals("##.OBSERVEFREQUENCY "))return a.observedFreq=Double.parseDouble(c),!0;if(b.equals("##.OBSERVENUCLEUS "))return a.setObservedNucleus(c),!0;if(b.equals("##$REFERENCEPOINT ")&&0!=a.shiftRefType){a.offset=
Double.parseDouble(c);a.dataPointNum=1;a.shiftRefType=2;break}if(b.equals("##.SHIFTREFERENCE ")){if(this.ignoreShiftReference||!a.dataType.toUpperCase().contains("SPECTRUM"))return!0;c=JU.PT.replaceAllCharacters(c,")(","");b=new java.util.StringTokenizer(c,",");if(4!=b.countTokens())return!0;try{b.nextToken(),b.nextToken(),a.dataPointNum=Integer.parseInt(b.nextToken().trim()),a.offset=Double.parseDouble(b.nextToken().trim())}catch(h){if(y(h,Exception))return!0;throw h;}0>=a.dataPointNum&&(a.dataPointNum=
1);a.shiftRefType=0;return!0}}return!1},"JSV.source.JDXDataObject,~S,~S,JU.SB,~B");c$.readHeaderLabel=c(c$,"readHeaderLabel",function(a,b,c,e,f){switch("##TITLE#####JCAMPDX###ORIGIN####OWNER#####DATATYPE##LONGDATE##DATE######TIME####".indexOf(b+"#")){case 0:return a.setTitle(f||null==c||c.equals("")?"Unknown":c),!0;case 10:return a.jcampdx=c,a=JU.PT.parseFloat(c),(6<=a||Float.isNaN(a))&&null!=e&&e.append("Warning: JCAMP-DX version may not be fully supported: "+c+"\n"),!0;case 20:return a.origin=null!=
c&&!c.equals("")?c:"Unknown",!0;case 30:return a.owner=null!=c&&!c.equals("")?c:"Unknown",!0;case 40:return a.dataType=c,!0;case 50:return a.longDate=c,!0;case 60:return a.date=c,!0;case 70:return a.time=c,!0}return!1},"JSV.source.JDXHeader,~S,~S,JU.SB,~B");c(c$,"setTabularDataType",function(a,b){b.equals("##PEAKASSIGNMENTS")?a.setDataClass("PEAKASSIGNMENTS"):b.equals("##PEAKTABLE")?a.setDataClass("PEAKTABLE"):b.equals("##XYDATA")?a.setDataClass("XYDATA"):b.equals("##XYPOINTS")&&a.setDataClass("XYPOINTS")},
"JSV.source.JDXDataObject,~S");c(c$,"processTabularData",function(a,b){a.setHeaderTable(b);if(a.dataClass.equals("XYDATA"))return a.checkRequiredTokens(),this.decompressData(a,null),!0;if(a.dataClass.equals("PEAKTABLE")||a.dataClass.equals("XYPOINTS")){a.setContinuous(a.dataClass.equals("XYPOINTS"));try{this.t.readLineTrimmed()}catch(c){if(!y(c,java.io.IOException))throw c;}var e;e=1.7976931348623157E308!=a.xFactor&&1.7976931348623157E308!=a.yFactor?JSV.common.Coordinate.parseDSV(this.t.getValue(),
a.xFactor,a.yFactor):JSV.common.Coordinate.parseDSV(this.t.getValue(),1,1);a.setXYCoords(e);e=JSV.common.Coordinate.deltaX(e[e.length-1].getXVal(),e[0].getXVal(),e.length);a.setIncreasing(0<e);return!0}return!1},"JSV.source.JDXDataObject,JU.Lst");c(c$,"readNTUPLECoords",function(a,b,c,e){var f;if(a.dataClass.equals("XYDATA")){f=b.get("##SYMBOL");var h=f.indexOf(c[0]);c=f.indexOf(c[1]);f=b.get("##VARNAME");a.varName=f.get(c).toUpperCase();f=b.get("##FACTOR");a.xFactor=Double.parseDouble(f.get(h));
a.yFactor=Double.parseDouble(f.get(c));f=b.get("##LAST");a.fileLastX=Double.parseDouble(f.get(h));f=b.get("##FIRST");a.fileFirstX=Double.parseDouble(f.get(h));f=b.get("##VARDIM");a.nPointsFile=Integer.parseInt(f.get(h));f=b.get("##UNITS");a.setXUnits(f.get(h));a.setYUnits(f.get(c));null==a.nucleusX&&null!=(f=b.get("##.NUCLEUS"))?(a.setNucleusAndFreq(f.get(0),!1),a.setNucleusAndFreq(f.get(h),!0)):null==a.nucleusX&&(a.nucleusX="?");this.decompressData(a,e);return!0}return a.dataClass.equals("PEAKTABLE")||
a.dataClass.equals("XYPOINTS")?(a.setContinuous(a.dataClass.equals("XYPOINTS")),f=b.get("##SYMBOL"),h=f.indexOf(c[0]),c=f.indexOf(c[1]),f=b.get("##UNITS"),a.setXUnits(f.get(h)),a.setYUnits(f.get(c)),a.setXYCoords(JSV.common.Coordinate.parseDSV(this.t.getValue(),a.xFactor,a.yFactor)),!0):!1},"JSV.source.JDXDataObject,java.util.Map,~A,~A");c(c$,"decompressData",function(a,b){var c=this.errorLog.length(),e=JSV.common.Coordinate.deltaX(a.fileLastX,a.fileFirstX,a.nPointsFile);a.setIncreasing(0<e);a.setContinuous(!0);
var f=new JSV.source.JDXDecompressor(this.t,a.fileFirstX,a.xFactor,a.yFactor,e,a.nPointsFile),h=L(2,0),k=System.currentTimeMillis(),j=f.decompressData(this.errorLog,h);JU.Logger.debugging&&JU.Logger.debug("decompression time = "+(System.currentTimeMillis()-k)+" ms");a.setXYCoords(j);k=f.getMinY();null!=b&&(k<b[0]&&(b[0]=k),k=f.getMaxY(),k>b[1]&&(b[1]=k));f=Double.isNaN(a.freq2dX)?a.observedFreq:a.freq2dX;k=1.7976931348623157E308!=f&&a.getXUnits().toUpperCase().equals("HZ");1.7976931348623157E308!=
a.offset&&(1.7976931348623157E308!=f&&a.dataType.toUpperCase().contains("SPECTRUM")&&0>a.jcampdx.indexOf("JEOL"))&&JSV.common.Coordinate.applyShiftReference(j,a.dataPointNum,a.fileFirstX,a.fileLastX,a.offset,k?f:1,a.shiftRefType);k&&(JSV.common.Coordinate.applyScale(j,1/f,1),a.setXUnits("PPM"),a.setHZtoPPM(!0));this.errorLog.length()!=c&&(this.errorLog.append(a.getTitle()).append("\n"),this.errorLog.append("firstX: "+a.fileFirstX+" Found "+h[0]+"\n"),this.errorLog.append("lastX from Header "+a.fileLastX+
" Found "+h[1]+"\n"),this.errorLog.append("deltaX from Header "+e+"\n"),this.errorLog.append("Number of points in Header "+a.nPointsFile+" Found "+j.length+"\n"));JU.Logger.debugging&&System.err.println(this.errorLog.toString())},"JSV.source.JDXDataObject,~A");c$.addHeader=c(c$,"addHeader",function(a,b,c){for(var e,f=0;f<a.size();f++)if((e=a.get(f))[0].equals(b)){e[1]=c;return}a.addLast(w(-1,[b,c,JSV.source.JDXSourceStreamTokenizer.cleanLabel(b)]))},"JU.Lst,~S,~S");c(c$,"checkCustomTags",function(a,
b,c){10<b.length&&(b=b.substring(0,10));null==a?System.out.println(b):this.modelSpectrum=a;b="##$MODELS ##$PEAKS  ##$SIGNALS##$MOLFILE##PEAKASSI##$UVIRASS##$MSFRAGM".indexOf(b);if(0>b)return!1;this.getMpr().set(this,this.filePath,null);try{switch(this.reader=new java.io.BufferedReader(new java.io.StringReader(c)),b){case 0:this.mpr.readModels();break;case 10:case 20:this.peakData=new JU.Lst;this.source.peakCount+=this.mpr.readPeaks(20==b,this.source.peakCount);break;case 30:this.acdAssignments=new JU.Lst;
this.acdMolFile=JU.PT.rep(c,"$$ Empty String","");break;case 40:case 50:case 60:this.acdAssignments=this.mpr.readACDAssignments(a.nPointsFile,40==b);break}}catch(e){if(y(e,Exception))throw new JSV.exception.JSVException(e.getMessage());throw e;}finally{this.reader=null}return!0},"JSV.common.Spectrum,~S,~S");c(c$,"getMpr",function(){return null==this.mpr?this.mpr=JSV.common.JSViewer.getInterface("J.jsv.JDXMOLParser"):this.mpr});e(c$,"rd",function(){return this.reader.readLine()});e(c$,"setSpectrumPeaks",
function(a,b,c){this.modelSpectrum.setPeakList(this.peakData,b,c);this.modelSpectrum.isNMR()&&this.modelSpectrum.setNHydrogens(a)},"~N,~S,~S");e(c$,"addPeakData",function(a){null==this.peakData&&(this.peakData=new JU.Lst);this.peakData.addLast(new JSV.common.PeakInfo(a))},"~S");e(c$,"processModelData",function(){},"~S,~S,~S,~S,~S,~N,~N,~B");e(c$,"discardLinesUntilContains",function(a){for(var b;null!=(b=this.rd())&&0>b.indexOf(a););return b},"~S");e(c$,"discardLinesUntilContains2",function(a,b){for(var c;null!=
(c=this.rd())&&0>c.indexOf(a)&&0>c.indexOf(b););return c},"~S,~S");e(c$,"discardLinesUntilNonBlank",function(){for(var a;null!=(a=this.rd())&&0==a.trim().length;);return a});D(c$,"VAR_LIST_TABLE",w(-1,["PEAKTABLE   XYDATA      XYPOINTS"," (XY..XY)    (X++(Y..Y)) (XY..XY)    "]),"ERROR_SEPARATOR","=====================\n")});s("JSV.source");t(["JSV.source.JDXHeader"],"JSV.source.JDXSource",["JU.Lst"],function(){c$=k(function(){this.type=0;this.isCompoundSource=!1;this.jdxSpectra=null;this.errors="";
this.filePath=null;this.peakCount=0;this.isView=!1;this.inlineData=null;m(this,arguments)},JSV.source,"JDXSource",JSV.source.JDXHeader);c(c$,"dispose",function(){this.jdxSpectra=this.headerTable=null});n(c$,function(a,b){z(this,JSV.source.JDXSource,[]);this.type=a;this.setFilePath(b);this.headerTable=new JU.Lst;this.jdxSpectra=new JU.Lst;this.isCompoundSource=0!=a},"~N,~S");c(c$,"getJDXSpectrum",function(a){return this.jdxSpectra.size()<=a?null:this.jdxSpectra.get(a)},"~N");c(c$,"addJDXSpectrum",
function(a,b,c){null==a&&(a=this.filePath);b.setFilePath(a);null!=this.inlineData&&b.setInlineData(this.inlineData);a=this.jdxSpectra.size();(0==a||!this.jdxSpectra.get(a-1).addSubSpectrum(b,c))&&this.jdxSpectra.addLast(b)},"~S,JSV.common.Spectrum,~B");c(c$,"getNumberOfSpectra",function(){return this.jdxSpectra.size()});c(c$,"getSpectra",function(){return this.jdxSpectra});c(c$,"getSpectraAsArray",function(){return null==this.jdxSpectra?null:this.jdxSpectra.toArray()});c(c$,"getErrorLog",function(){return this.errors});
c(c$,"setErrorLog",function(a){this.errors=a},"~S");c(c$,"setFilePath",function(a){this.filePath=a},"~S");c(c$,"getFilePath",function(){return this.filePath});c$.createView=c(c$,"createView",function(a){var b=new JSV.source.JDXSource(-2,"view");b.isView=!0;for(var c=0;c<a.size();c++)b.addJDXSpectrum(a.get(c).getFilePath(),a.get(c),!1);return b},"JU.Lst");c(c$,"getHeaderRowDataAsArray",function(a,b){null==b&&(b=w(0,0,null));for(var c=this.getHeaderRowDataAsArray(a,b.length),e=b.length;0<=--e;)c[c.length-
b.length+e]=b[e];return c},"~B,~A");c(c$,"setID",function(a){this.jdxSpectra.get(0).sourceID=a},"~S");c(c$,"matchesFilePath",function(a){return this.filePath.equals(a)||this.filePath.$replace("\\","/").equals(a)},"~S");c(c$,"setInlineData",function(a){this.inlineData=a;if(null!=this.jdxSpectra)for(var b=this.jdxSpectra.size();0<=--b;)this.jdxSpectra.get(b).setInlineData(a)},"~S");D(c$,"TYPE_VIEW",-2,"TYPE_UNKNOWN",-1,"TYPE_SIMPLE",0,"TYPE_BLOCK",1,"TYPE_NTUPLE",2)});s("JSV.source");t(null,"JSV.source.JDXSourceStreamTokenizer",
["java.lang.Character","JU.SB","JU.Logger"],function(){c$=k(function(){this.value=this.rawLabel=this.br=null;this.labelLineNo=0;this.line=null;this.lineNo=0;this.rawLine=null;m(this,arguments)},JSV.source,"JDXSourceStreamTokenizer");n(c$,function(a){this.br=a},"java.io.BufferedReader");c(c$,"peakLabel",function(){return this.nextLabel(!1)});c(c$,"getLabel",function(){return this.nextLabel(!0)});c(c$,"nextLabel",function(a){for(this.value=this.rawLabel=null;null==this.line||0==this.line.length;){try{this.readLine();
if(null==this.line)return this.line="",null;this.line=this.line.trim()}catch(b){if(y(b,java.io.IOException))return this.line="",null;throw b;}if(this.line.startsWith("##"))break;this.line=null}this.rawLine=this.line;var c=this.line.indexOf("=");0>c?(a&&JU.Logger.info("BAD JDX LINE -- no '=' (line "+this.lineNo+"): "+this.line),this.rawLabel=this.line,a||(this.line="")):(this.rawLabel=this.line.substring(0,c).trim(),a&&(this.line=this.line.substring(c+1)));this.labelLineNo=this.lineNo;JU.Logger.debugging&&
JU.Logger.info(this.rawLabel);return JSV.source.JDXSourceStreamTokenizer.cleanLabel(this.rawLabel)},"~B");c$.cleanLabel=c(c$,"cleanLabel",function(a){if(null==a)return null;var b,c=new JU.SB;for(b=0;b<a.length;b++)switch(a.charAt(b)){case "/":case "\\":case " ":case "-":case "_":break;default:c.appendC(a.charAt(b))}return c.toString().toUpperCase()},"~S");c(c$,"getValue",function(){if(null!=this.value)return this.value;var a=(new JU.SB).append(this.line);0<a.length()&&a.appendC("\n");try{for(;null!=
this.readLine()&&!(0<=this.line.indexOf("##")&&this.line.trim().startsWith("##"));)a.append(this.line).appendC("\n")}catch(b){if(y(b,java.io.IOException))JU.Logger.info(b.toString());else throw b;}this.value=this.rawLabel.startsWith("##$")?a.toString().trim():JSV.source.JDXSourceStreamTokenizer.trimLines(a);JU.Logger.debugging&&JU.Logger.info(this.value);return this.value});c(c$,"readLineTrimmed",function(){this.readLine();if(null==this.line)return null;if(0>this.line.indexOf("$$"))return this.line.trim();
var a=(new JU.SB).append(this.line);return JSV.source.JDXSourceStreamTokenizer.trimLines(a)});c(c$,"flushLine",function(){var a=(new JU.SB).append(this.line);this.line=null;return JSV.source.JDXSourceStreamTokenizer.trimLines(a)});c(c$,"readLine",function(){this.line=this.br.readLine();this.lineNo++;return this.line});c$.trimLines=c(c$,"trimLines",function(a){var b=a.length(),c=b-1,e=JSV.source.JDXSourceStreamTokenizer.ptNonWhite(a,0,b);if(e>=b)return"";for(var f=V(b-e,"\x00"),h=0;e<b;e++){var k;
switch(k=a.charAt(e)){case "\r":if(e<c&&"\n"==a.charAt(e+1))continue;k="\n";break;case "\n":0<h&&"\n"!=f[h-1]&&(h-=e-JSV.source.JDXSourceStreamTokenizer.ptNonSpaceRev(a,e)-1);e=JSV.source.JDXSourceStreamTokenizer.ptNonSpace(a,++e,b)-1;break;case "$":if(e<c&&"$"==a.charAt(e+1)){for(e++;++e<b&&0>"\n\r".indexOf(a.charAt(e)););continue}}"\n"==k&&0<h&&"\n"==f[h-1]||(f[h++]=k)}0<h&&"\n"==f[h-1]&&--h;return String.instantialize(f).substring(0,h).trim()},"JU.SB");c$.ptNonWhite=c(c$,"ptNonWhite",function(a,
b,c){for(;b<c&&Character.isWhitespace(a.charAt(b));)b++;return b},"JU.SB,~N,~N");c$.ptNonSpace=c(c$,"ptNonSpace",function(a,b,c){for(;b<c&&(" "==a.charAt(b)||"\t"==a.charAt(b));)b++;return b},"JU.SB,~N,~N");c$.ptNonSpaceRev=c(c$,"ptNonSpaceRev",function(a,b){for(;0<=--b&&(" "==a.charAt(b)||"\t"==a.charAt(b)););return b},"JU.SB,~N")});s("JSV.tree");t(["JSV.api.JSVTree"],"JSV.tree.SimpleTree",["JSV.common.JSVFileManager","$.PanelNode","JSV.tree.SimpleTreeModel","$.SimpleTreeNode","$.SimpleTreePath"],
function(){c$=k(function(){this.selectedPath=this.vwr=this.spectraTreeModel=this.rootNode=this.si=null;m(this,arguments)},JSV.tree,"SimpleTree",null,JSV.api.JSVTree);e(c$,"getRootNode",function(){return this.rootNode});n(c$,function(a){this.vwr=a;this.rootNode=new JSV.tree.SimpleTreeNode("Spectra",null);this.spectraTreeModel=new JSV.tree.SimpleTreeModel(this.rootNode)},"JSV.common.JSViewer");c(c$,"valueChanged",function(){this.vwr.selectedTreeNode(this.getLastSelectedPathComponent())});c(c$,"getLastSelectedPathComponent",
function(){return null==this.selectedPath?null:this.selectedPath.getLastPathComponent()});e(c$,"setSelectedPanel",function(a,b){if(null!=b){var c=JSV.common.PanelNode.findNode(b,this.vwr.panelNodes).treeNode;this.setSelectionPath(this.vwr.spectraTree.newTreePath(c.getPath()))}},"JSV.api.ScriptInterface,JSV.api.JSVPanel");c(c$,"setSelectionPath",function(a){this.selectedPath=a;this.valueChanged()},"JSV.api.JSVTreePath");e(c$,"createTree",function(a,b,c){var e=this.vwr.spectraTree,f=e.getRootNode(),
h=this.vwr.panelNodes,k=JSV.common.JSVFileManager.getTagName(b.getFilePath()),j=new JSV.common.PanelNode(null,k,b,null),l=new JSV.tree.SimpleTreeNode(k,j);j.setTreeNode(l);e.spectraTreeModel.insertNodeInto(l,f,f.getChildCount());for(f=0;f<c.length;f++){var j=new JSV.common.PanelNode(a+"."+(f+1),k,b,c[f]),m=new JSV.tree.SimpleTreeNode(j.toString(),j);j.setTreeNode(m);h.addLast(j);e.spectraTreeModel.insertNodeInto(m,l,l.getChildCount())}this.vwr.selectFrameNode(c[0]);return l},"~N,JSV.source.JDXSource,~A");
e(c$,"setPath",function(a){this.setSelectionPath(a)},"JSV.api.JSVTreePath");c(c$,"newTreePath",function(a){return new JSV.tree.SimpleTreePath(a)},"~A");e(c$,"deleteNodes",function(a){for(var b=0;b<a.size();b++)this.spectraTreeModel.removeNodeFromParent(a.get(b))},"JU.Lst")});s("JSV.tree");t(["java.util.Enumeration"],"JSV.tree.SimpleTreeEnumeration",null,function(){c$=k(function(){this.node=null;this.pt=0;m(this,arguments)},JSV.tree,"SimpleTreeEnumeration",null,java.util.Enumeration);n(c$,function(a){this.node=
a},"JSV.tree.SimpleTreeNode");e(c$,"hasMoreElements",function(){return this.pt<this.node.$children.size()});e(c$,"nextElement",function(){return this.node.$children.get(this.pt++)})});s("JSV.tree");c$=k(function(){this.rootNode=null;m(this,arguments)},JSV.tree,"SimpleTreeModel");n(c$,function(a){this.rootNode=a},"JSV.api.JSVTreeNode");c(c$,"insertNodeInto",function(a,b,c){b.$children.add(c,a);a.prevNode=b},"JSV.api.JSVTreeNode,JSV.api.JSVTreeNode,~N");c(c$,"removeNodeFromParent",function(a){a.prevNode.$children.removeObj(a)},
"JSV.api.JSVTreeNode");s("JSV.tree");t(["JSV.api.JSVTreeNode"],"JSV.tree.SimpleTreeNode",["JU.Lst","JSV.tree.SimpleTreeEnumeration"],function(){c$=k(function(){this.panelNode=null;this.index=0;this.text=this.$children=this.prevNode=null;m(this,arguments)},JSV.tree,"SimpleTreeNode",null,JSV.api.JSVTreeNode);n(c$,function(a,b){this.text=a;this.panelNode=b;this.$children=new JU.Lst},"~S,JSV.common.PanelNode");e(c$,"getPanelNode",function(){return this.panelNode});e(c$,"getIndex",function(){return this.index});
e(c$,"setIndex",function(a){this.index=a},"~N");e(c$,"children",function(){return new JSV.tree.SimpleTreeEnumeration(this)});e(c$,"getChildCount",function(){return this.$children.size()});e(c$,"getPath",function(){var a=new JU.Lst,b=this;for(a.addLast(b);null!=(b=b.prevNode);)a.add(0,b);return a.toArray()});e(c$,"isLeaf",function(){return null!=this.prevNode&&null!=this.prevNode.prevNode});e(c$,"toString",function(){return this.text})});s("JSV.tree");t(["JSV.api.JSVTreePath"],"JSV.tree.SimpleTreePath",
null,function(){c$=k(function(){this.path=null;m(this,arguments)},JSV.tree,"SimpleTreePath",null,JSV.api.JSVTreePath);n(c$,function(a){this.path=a},"~A");e(c$,"getLastPathComponent",function(){return null==this.path||0==this.path.length?null:this.path[this.path.length-1]})})}Y._coreLoaded=!0})(Clazz,Clazz.getClassName,Clazz.newLongArray,Clazz.doubleToByte,Clazz.doubleToInt,Clazz.doubleToLong,Clazz.declarePackage,Clazz.instanceOf,Clazz.load,Clazz.instantialize,Clazz.decorateAsClass,Clazz.floatToInt,
Clazz.floatToLong,Clazz.makeConstructor,Clazz.defineEnumConstant,Clazz.exceptionOf,Clazz.newIntArray,Clazz.defineStatics,Clazz.newFloatArray,Clazz.declareType,Clazz.prepareFields,Clazz.superConstructor,Clazz.newByteArray,Clazz.declareInterface,Clazz.p0p,Clazz.pu$h,Clazz.newShortArray,Clazz.innerTypeInstance,Clazz.isClassDefined,Clazz.prepareCallback,Clazz.newArray,Clazz.castNullAs,Clazz.floatToShort,Clazz.superCall,Clazz.decorateAsType,Clazz.newBooleanArray,Clazz.newCharArray,Clazz.implementOf,Clazz.newDoubleArray,
Clazz.overrideConstructor,Clazz.clone,Clazz.doubleToShort,Clazz.getInheritedLevel,Clazz.getParamsType,Clazz.isAF,Clazz.isAB,Clazz.isAI,Clazz.isAS,Clazz.isASS,Clazz.isAP,Clazz.isAFloat,Clazz.isAII,Clazz.isAFF,Clazz.isAFFF,Clazz.tryToSearchAndExecute,Clazz.getStackTrace,Clazz.inheritArgs,Clazz.alert,Clazz.defineMethod,Clazz.overrideMethod,Clazz.declareAnonymous,Clazz.cloneFinals);
